rna3074, rna3074 (mRNA) Nannochloropsis gaditana

Overview
Namerna3074
Unique Namerna3074
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1453
Alignment locationCM002460.1:650325..650745 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100069g13.5324.mrna
Orig protein idgnl|cribi|Naga_100069g13.5324
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:650325..650745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100069g13gene2952Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3074rna3074-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27605.1cds3066Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3074 ID=rna3074|Name=rna3074|organism=Nannochloropsis gaditana|type=mRNA|length=1453bp
ACCCCTTGCGTGTCAAATTATTTCTTGTGTCACTCGCCTTGAGACCGTGT
CACCCGTCAGAGATGGTCATGTAGCTGAGTGGCCATGAAGTTAAAGATGA
CTGGATGCAATTAGACGCTACTTTATGACTAAAGTGGCGTCAACCTCTCT
TCCACCTGGCGCACTCCGACCTATGTCCGATCTTAGGCGTTCACCCAGTA
AATGGTTACGCTACGAAAAATATGTGAGGCACCCAATTCGAACGCATTGA
GCAACTGACGATACTCCTTTTTAATCCACGTATTACGCAGGTCCTCTCGT
TCTTACCCAGAAACAACATGTTGCGCTCTGCAGCCTGCCTAGGTACCCTT
GTGGTCGTTTGCATCATCGGCCTCGTCATCGGGTTCAGACCATCCTACAA
TTCACCCTCTCAGAGTAGCAGGCCTGTCACACTAAAAAGTTGCGTGCGGG
ACTTCCATTCACGCACGTTTTCCAGCCGCGGTCAGAGAAGCAGACTTTTC
CAAGGTCCGCCCGGCAGACCTACCCGCGAGAACGAGCCTGACGAGTACTT
CAAGTCGAACTTGGAGAAGAAAGAGCTGTCAGAGCGACTTGTGGACCCCC
AAGTTTTGATCGCTGTGGTTAGCATCCTTGCCCCATTTGTGGCAGTAGGG
GTTCTGCTGGGCGGCGGCTTCCTGACGCAGTAGACGGGATCACACGAATT
TGGCAGCAATACACATCACAAAATCGACGTAACTAGTCTCCTCGTCCCTC
ACCACGTCTTGCAGGTGTCATTAAAGAATAATCGACGCCATGGAAGGCAT
TGTTAACTTCGTATGGGATTTCGCCAGTAAATGCCAACATGTGCGTCAAG
TACAACCTAATGAAGGGGAATCACGCCAGCGAGATCGAAAAGGCTTTGTC
TCATCGACATAATTTAAAGAAGGCGACACATGGATATGTGCCGTCCGATG
ACAAAGATGGAAGATGAAAGAATGCGGAGAGATCGTGTCTGGCATCGGTG
CTCTCTTCCATCTTCTCGTGGGTAGGGAAGGGAGGAGGAGGGGGCAGCCA
CTTGTCCTTTCGACATCCGGACTTCACTCACCTCCCCAAAGCATGTGGTC
TCTAGCCACCCTACTTCGTCTCATGTGGTGAAGTTGGGTGAACCGAACTT
GGGCTCTAAAGCATCGGTGTGCATGGCGGATGACCGACGCGTGTCCCTCG
GTCCATGTCCTGGTATCCTTTCTTGTGTCACCGCGACTCTGTGCCGCGCC
TTTCTGTCTTGGTCTCTCCCGCAGTCCTTTTTCGGGACTCCCCAAGCCAG
TATGCAATTTTGTGGGGAGGTTTCACCTTGTCTGTACAAACAACATACAA
AGGAAACAAAGTCGTGCGCACGGATGCATGATGAGATCGATTTACTCCAT
GCATTGGGCGGAAAAATACCCTGATCGTTCTTGGTCACAACTATGATAAA
TAG
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protein sequence of rna3074

>rna3074-protein ID=rna3074-protein|Name=rna3074|organism=Nannochloropsis gaditana|type=polypeptide|length=93bp
MLFVQTRQKGAAQSRGDTRKDTRTWTEGHASVIRHAHRCFRAQVRFTQLH
HMRRSRVARDHMLWGDGREHLVPEFSDTSSREERQVETIRWQR
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mRNA from alignment at CM002460.1:650325..650745+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3074 ID=rna3074|Name=rna3074|organism=Nannochloropsis gaditana|type=mRNA|length=421bp|location=Sequence derived from alignment at CM002460.1:650325..650745+ (Nannochloropsis gaditana)
ATGTTGTTTGTACAGACAAGGTGAAACCTCCCCACAAAATTGCATACTGG
CTTGGGGAGTCCCGAAAAAGGACTGCGGGAGAGACCAAGACAGAAAGGCG
CGGCACAGAGTCGCGGTGACACAAGAAAGGATACCAGGACATGGACCGAG
GGACACGCGTCGGTCATCCGCCATGCACACCGATGCTTTAGAGCCCAAGT
TCGGTTCACCCAACTTCACCACATGAGACGAAGTAGGGTGGCTAGAGACC
ACATGCTTTGGGGAGGTGAGTGAAGTCCGGATGTCGAAAGGACAAGtggc
tgccccctcctcctcccttccctacccacgagaagatggaagagagCACC
TGGTGCCGGAGTTTTCCGACACAAgttcgagggaggaaaggcaggttGAA
ACCATAAGGTGGCAGCGGTAA
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Coding sequence (CDS) from alignment at CM002460.1:650325..650745+

>rna3074 ID=rna3074|Name=rna3074|organism=Nannochloropsis gaditana|type=CDS|length=846bp|location=Sequence derived from alignment at CM002460.1:650325..650745+ (Nannochloropsis gaditana)
ATGTTGTTTGTACAGACAAGACAGAAAGGCGCGGCACAGAGTCGCGGTGA
CACAAGAAAGGATACCAGGACATGGACCGAGGGACACGCGTCGGTCATCC
GCCATGCACACCGATGCTTTAGAGCCCAAGTTCGGTTCACCCAACTTCAC
CACATGAGACGAAGTAGGGTGGCTAGAGACCACATGCTTTGGGGAGatgg
aagagagCACCTGGTGCCGGAGTTTTCCGACACAAgttcgagggaggaaa
ggcaggttGAAACCATAAGGTGGCAGCGGTAAATGTTGTTTGTACAGACA
AGACAGAAAGGCGCGGCACAGAGTCGCGGTGACACAAGAAAGGATACCAG
GACATGGACCGAGGGACACGCGTCGGTCATCCGCCATGCACACCGATGCT
TTAGAGCCCAAGTTCGGTTCACCCAACTTCACCACATGAGACGAAGTAGG
GTGGCTAGAGACCACATGCTTTGGGGAGatggaagagagCACCTGGTGCC
GGAGTTTTCCGACACAAgttcgagggaggaaaggcaggttGAAACCATAA
GGTGGCAGCGGTAAATGTTGTTTGTACAGACAAGACAGAAAGGCGCGGCA
CAGAGTCGCGGTGACACAAGAAAGGATACCAGGACATGGACCGAGGGACA
CGCGTCGGTCATCCGCCATGCACACCGATGCTTTAGAGCCCAAGTTCGGT
TCACCCAACTTCACCACATGAGACGAAGTAGGGTGGCTAGAGACCACATG
CTTTGGGGAGatggaagagagCACCTGGTGCCGGAGTTTTCCGACACAAg
ttcgagggaggaaaggcaggttGAAACCATAAGGTGGCAGCGGTAA
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Synonyms
Publications