rna3072, rna3072 (mRNA) Nannochloropsis gaditana

Overview
Namerna3072
Unique Namerna3072
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1704
Alignment locationCM002460.1:647103..647550 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100069g11.5336.mrna
Orig protein idgnl|cribi|Naga_100069g11.5336
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:647103..647550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100069g11gene2950Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3072rna3072-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27617.1cds3064Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3072 ID=rna3072|Name=rna3072|organism=Nannochloropsis gaditana|type=mRNA|length=1704bp
ATGATGTTCGGCAAGCGCGACCTGGGCTTGGCCCTTTCAGACAAGGTCGA
GGACAACGTGCTCACGCACACCCATGACGACACGGCCGCTGACGTGGGGA
AGAAAGAAGAGGAGCCTGTGGAGGAGGACGAGGAGGACGAGGAGGAGGAG
GATGCCATTGCCAGACGCCGGGCTGCGATCCGGGAGCGTCTAAAGAGTTT
GCGCGTGGAGGAGGAGGCGGCTACCGCGGCTGCCGAGGAGGAGGAGGAGG
AAGCGGAGGAGGAGGAGGAGGAGGACTCGGAGTACGAGGAAGAGAGCGAG
GAGAGCGAAGAGGAACGGGCGGGGGGCCTCTTTGCACTGGCTCGGCCCGT
CTTCATCCCCAAGGGCAAGCGGGAGCTGGACCGAGACCGAGAGCGGGAGG
AGCAGGAGGAAGTGGAGAAGGAGCGAAAAGCCGCGGCGGCGCGGGAATCA
CGTCGACGGGAAACACGGCTGATGGTGGCGGAGGAGGTGCGGAAGGAGTC
AGAGGGGGCCGTGGGGTCGGAGGGGGCGATGGAGGGGTATGGGTCGGACG
CCGGGGCGCCGGACGATTCGGACAGACCGGAGGAGGACGCTTTGGAGTTT
GAAAACTGGCGGCTGCGGGAGCTTGCTCGGATGAAGCGGGAGATGGAGGC
GAGGCAGGCGCGGGAGAAGGACAAGGCGGAGGTGGCGCGTCGACGGGGAA
TGACCGAGGCCGAGCGGGACGCCGAAGACCGGCGGCTGGGTGTCGGGGTG
TATGCGAAGCAGGGGGGCAAGGGGGAGAAGGCCAAATGGAAGTTCATGCA
GAAGTACTACCACAAGGGGGCCTTCTATATGGACGAAGAGTCGGTGGCGC
GGCCGGACGATGTGCGGCGGAGGGCGGCGGACGAGGCGACGGGTGAGGAT
AAGTTCAATCGAGCGGCGCTGCCGAGCGTCATGCAGGTGAAGAATTTTGG
ACGTGCGGGGCAGACCAAGTACACGCATTTATTGGATCAAGATACAACGC
GTGCAGAGAAGCACAAAACTGGGTCGGTATGGCAACAAATGGACCAAGAC
AAGCGTTTCGGGATGGTAGGGGATGCGAAAAACAAATTTGTGCATAAGCT
CGCTGGCACTGGTGACATCGACCAGGCGGGGCGTCGGAAAAAGAAAGGCT
AAAAAGACAAGATGCCTGTCGTTAACGAAAGAAACACAACAATTCAGAAA
CGAGACTTCGGCAATGAATGATGCTTGTGCTTTCAAAGATATGCCCTCAT
TATGGCATGTAGGACCAGCCTGATGCCCGGTAGTCCAGCGCACGCGAGTG
GAACGAGGGGAGAGGGGAGGTTGGAGGGATCATGGACAGCGGCTTTCTCT
CCCCCCCCTGTGGGCGCGACCGAAGCTGTCCATGCGAAACCGCAATCCTG
CCCACCGCTCTGCTTGTCACGTACAAAGTTCAAGTCAGACGTGGTATGTG
TGTCTGCTCCATCAAAAAGCCGAAATTGGTTGGTTTTTGGGGTCCGCACG
ACTACAGCTTGGGCGCGTGAACATTCAACTTGAGGCAAACGACGGTTTCG
CTCTGCCCATGAAACTTATGGTCGTGTATAACGAAACTCTGAAGCTCTTT
CTGTCATAACGAACGAAGCCATCCATTCGGTAGACTTGTTGCTCATGATA
CATTCCATGGTTGCCTTTTGAAAACCGCATAAGCGGCAGCGACGGCAGCA
AGCC
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protein sequence of rna3072

>rna3072-protein ID=rna3072-protein|Name=rna3072|organism=Nannochloropsis gaditana|type=polypeptide|length=129bp
MRFSKGNHGMYHEQQVYRMDGFVQRNRRLPQVECSRAQAVVVRTPKTNQF
RLFDGADTHTTSDLNFVRDKQSGGQDCGFAWTASVAPTGGGEKAAVHDPS
NLPSPLVPLACAGLPGIRLVLHAIMRAYL
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mRNA from alignment at CM002460.1:647103..647550+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3072 ID=rna3072|Name=rna3072|organism=Nannochloropsis gaditana|type=mRNA|length=448bp|location=Sequence derived from alignment at CM002460.1:647103..647550+ (Nannochloropsis gaditana)
ATGCGGTTTTCAAAAGGCAACCATGGAATGTATCATGAGCAACAAGTCTA
CCGAATGGATGGCTTCGTTCGTTATGACAGAAAGAGCTTCAGAGTTTCGT
TATACACGACCATAAGTTTCATGGGCAGAGCGAAACCGTCGTTTGCCTCA
AGTTGAATGTTCACGCGCCCAAGCTGTAGTCGTGCGGACCCCAAAAACCA
ACCAATTTCGGCTTTTTGATGGAGCAGACACACATACCACGTCTGACTTG
AACTTTGTACGTGACAAGCAGAGCGGTGGGCAGGATTGCGGTTTCGCATG
GACAGCTTCGGTCGCGCccacaggggggggagagaaagccgcTGTCCATG
AtccctccaacctcccctctcccctcgttccACTCGCGTGCGCTGGACTA
CCGGGCATCAGGCTGGTCCTACATGCCATAATGAGGGCATATCTTTGA
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Coding sequence (CDS) from alignment at CM002460.1:647103..647550+

>rna3072 ID=rna3072|Name=rna3072|organism=Nannochloropsis gaditana|type=CDS|length=780bp|location=Sequence derived from alignment at CM002460.1:647103..647550+ (Nannochloropsis gaditana)
ATGCGGTTTTCAAAAGGCAACCATGGAATGTATCATGAGCAACAAGTCTA
CCGAATGGATGGCTTCGTTCAGCGAAACCGTCGTTTGCCTCAAGTTGAAT
GTTCACGCGCCCAAGCTGTAGTCGTGCGGACCCCAAAAACCAACCAATTT
CGGCTTTTTGATGGAGCAGACACACATACCACGTCTGACTTGAACTTTGT
ACGTGACAAGCAGAGCGGTGGGCAGGATTGCGGTTTCGCATGGACAGCTT
CGGTCGCGCccacaggggggggagagaaagccgcTGTCCATGAtccctcc
aacctcccctctcccctcgttccACTCGCGTGCGCTGGACTACCGGGCAT
CAGGCTGGTCCTACATGCCATAATGAGGGCATATCTTTGAATGCGGTTTT
CAAAAGGCAACCATGGAATGTATCATGAGCAACAAGTCTACCGAATGGAT
GGCTTCGTTCAGCGAAACCGTCGTTTGCCTCAAGTTGAATGTTCACGCGC
CCAAGCTGTAGTCGTGCGGACCCCAAAAACCAACCAATTTCGGCTTTTTG
ATGGAGCAGACACACATACCACGTCTGACTTGAACTTTGTACGTGACAAG
CAGAGCGGTGGGCAGGATTGCGGTTTCGCATGGACAGCTTCGGTCGCGCc
cacaggggggggagagaaagccgcTGTCCATGAtccctccaacctcccct
ctcccctcgttccACTCGCGTGCGCTGGACTACCGGGCATCAGGCTGGTC
CTACATGCCATAATGAGGGCATATCTTTGA
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Synonyms
Publications