rna3063, rna3063 (mRNA) Nannochloropsis gaditana

Overview
Namerna3063
Unique Namerna3063
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1014
Alignment locationCM002460.1:616429..617455 +

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Properties
Property NameValue
ProductPsbQ-like domain protein
Orig transcript idgnl|cribi|Naga_100069g2.5329.mrna
Orig protein idgnl|cribi|Naga_100069g2.5329
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:616429..617455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100069g2gene2941Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3063rna3063-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27610.1cds3055Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3063 ID=rna3063|Name=rna3063|organism=Nannochloropsis gaditana|type=mRNA|length=1014bp
ATGGATTGGACAAAGCAAGCGTCCATTTTTCGAGGGATGCTCTGGTTGGC
TCTGTTGGCATCAATATCGACAACTTTTGCATTTGTAGGACATCTTGGTC
CCCAAACCGCATCTATTACCGCCACTGCCCGCTCGGGATCCTACCGGACT
GCTTCAAACACCTTGTTCATGATGGCTGGGGATAAAAAATACAAAATTGT
TTTGGTTCGCCACGGAGAAAGTACTTGGAATGATGAGAACCGTTTCACTG
GCTGGTACGATTGCCCGCTTTCTATCAAGGGGCTGAAAGAGGCTGAGGAG
GCTGGCAAGGCTTTGAAGGAAGCGAATCTAAGGTTTGATATGGCATATAC
CTCAGTGTTGCGCCGAGCCATTCACACATTGTGGATGTGCCTGGAGGAAT
TGGACCTAATGTGGATTCCGGTGAAGAAAAATTGGCGTCTGAACGAGCGA
CATTATGGCGCTCTTCAGGGTTTGAACAAAAAGGAGACGGTTGACAAGCA
CGGCATTGAGCAGGTGAATATCTGGCGCCGATCGTACGACATTCCTCCTC
CCCCCGTCGACAAGTCTAGCGAGCACTACCCTGGCAATGACCCCAAGTAT
GCGGACGTGGACAAATCGGTACTACCTGTGACTGAGTCTTTGAAGACAAC
AAAGGCTCGTTTCTTGCCATTGTGGGAGAACGAAATTATTCCTGATATTA
AGGCTGGAAAGCGTATTGTTATTGCTGCGCACGGCAACACGATCCGAGCC
CTTGTTCAGCATTTGGATAACATCTCTGAGGACGTTATATGCGGGTTAAA
CGTACCTACGGGGGTGCCCTTGATTTACGAATTGGACGAGAATATGAAGC
CTATTAAACACGCTGACGCCATCGCGCCCCTCCAAGGACATTATTTGGGC
GATCAGGAGAAGATTCGAGCCAAAATCGAGGGCGTTGCAGCTCAAACAGG
AGGCAAAAAGCTCGGAAATCACTTGCCCAAGACGTTTGGATCAGAATACA
TTTGCGGGTGGTAA
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protein sequence of rna3063

>rna3063-protein ID=rna3063-protein|Name=rna3063|organism=Nannochloropsis gaditana|type=polypeptide|length=241bp
MRETQASYVSVRYCLSDMIIVTRLLIILAVFLAAIEAFHFSGRNGGFPRR
IHRSNTHTNDDNGFERRELIHTATTALGAIGAFGSILLSLPSVAGAASPV
ISEIKIRESVKGVKDSVEALKLYEDFVNTKDFYGVKKSLRVPPVSDIRRD
CRRIIAGLEGSVKKDTDKAYSEFIVSLEQVDLLATKAIQNDQKIKDEELA
QLTARFAEAQARLDKVLKLVLTTRYATEPVNVRLETEKTEL
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mRNA from alignment at CM002460.1:616429..617455+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3063 ID=rna3063|Name=rna3063|organism=Nannochloropsis gaditana|type=mRNA|length=1027bp|location=Sequence derived from alignment at CM002460.1:616429..617455+ (Nannochloropsis gaditana)
ATGCGGGAGGTCCAACCCCGTGTCGAAACCCGCTGAGGTCACTCTCGGCC
CAGCCAgccaggcaggcggggcacTTCCCACGCGCCACGGGACGGACCAT
GAGACCATTTTTAACGGTTGATTACGCTTTCACTTTATTACATTGCAGAC
GCAGGCATCCTACGTCTCCGTCCGTTACTGTCTTTCGGACATGATCATTG
TTACGCGGCTCCTAATCATTTTGGCCGTGTTCCTCGCGGGTAAGAAGCCG
GAAGAGGGATCTGCTAAAACTTTAATTTGAACAACTTCCATACTGATGTC
AATTCATACATGCAGCCATCGAGGCTTTTCATTTTTCTGGAAGAAATGGT
GGATTCCCTCGTCGAATTCATCGGTCGAACACGCATACTAACGACGACAA
CGGATTCGAGAGAAGGTCCGTAAATTGGAACAAAGTTAGCTCCATCACAC
AAGTGAACATTCATCGATATTTTCTCGAACTTTTCTATATTTGGATTGTA
GAGAGCTTATTCACACAGCTACTACCGCCCTGGGAGCCATAGGCGCATTT
GGGAGCATCCTTTTAAGCCTTCCTAGTGTCGCGGGCGCCGCATCTCCCGT
CATAAGTGAGATCAAGATCCGTGAGAGTGTGAAAGGTGTGAAAGATAGCG
TGGAGGCATTGAAGCTGTATGAAGACTTTGTCAATACCAAGGATTTCTAT
GGTGTCAAGAAATCATTGCGTGTTCCACCCGTGTCGGACATCCGCCGGGA
CTGCCGTCGAATTATCGCTGGCTTGGAGGGTTCGGTAAAAAAAGATACCG
ATAAGGCGTACAGCGAATTTATTGTAAGCTTGGAACAGGTTGACCTTCTG
GCAACCAAGGCTATTCAAAATGACCAGAAGATCAAGGATGAGGAGCTCGC
GCAATTGACTGCACGATTTGCAGAGGCGCAAGCGAGACTCGACAAAGTTC
TGAAATTAGTTTTGACCACCCGCTACGCCACTGAGCCCGTGAACGTCCGT
TTAGAAACTGAGAAAACGGAATTGTGA
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Coding sequence (CDS) from alignment at CM002460.1:616429..617455+

>rna3063 ID=rna3063|Name=rna3063|organism=Nannochloropsis gaditana|type=CDS|length=2904bp|location=Sequence derived from alignment at CM002460.1:616429..617455+ (Nannochloropsis gaditana)
ATGCGGGAGACGCAGGCATCCTACGTCTCCGTCCGTTACTGTCTTTCGGA
CATGATCATTGTTACGCGGCTCCTAATCATTTTGGCCGTGTTCCTCGCGG
CCATCGAGGCTTTTCATTTTTCTGGAAGAAATGGTGGATTCCCTCGTCGA
ATTCATCGGTCGAACACGCATACTAACGACGACAACGGATTCGAGAGAAG
AGAGCTTATTCACACAGCTACTACCGCCCTGGGAGCCATAGGCGCATTTG
GGAGCATCCTTTTAAGCCTTCCTAGTGTCGCGGGCGCCGCATCTCCCGTC
ATAAGTGAGATCAAGATCCGTGAGAGTGTGAAAGGTGTGAAAGATAGCGT
GGAGGCATTGAAGCTGTATGAAGACTTTGTCAATACCAAGGATTTCTATG
GTGTCAAGAAATCATTGCGTGTTCCACCCGTGTCGGACATCCGCCGGGAC
TGCCGTCGAATTATCGCTGGCTTGGAGGGTTCGGTAAAAAAAGATACCGA
TAAGGCGTACAGCGAATTTATTGTAAGCTTGGAACAGGTTGACCTTCTGG
CAACCAAGGCTATTCAAAATGACCAGAAGATCAAGGATGAGGAGCTCGCG
CAATTGACTGCACGATTTGCAGAGGCGCAAGCGAGACTCGACAAAGTTCT
GAAATTAGTTTTGACCACCCGCTACGCCACTGAGCCCGTGAACGTCCGTT
TAGAAACTGAGAAAACGGAATTGTGAATGCGGGAGACGCAGGCATCCTAC
GTCTCCGTCCGTTACTGTCTTTCGGACATGATCATTGTTACGCGGCTCCT
AATCATTTTGGCCGTGTTCCTCGCGGCCATCGAGGCTTTTCATTTTTCTG
GAAGAAATGGTGGATTCCCTCGTCGAATTCATCGGTCGAACACGCATACT
AACGACGACAACGGATTCGAGAGAAGAGAGCTTATTCACACAGCTACTAC
CGCCCTGGGAGCCATAGGCGCATTTGGGAGCATCCTTTTAAGCCTTCCTA
GTGTCGCGGGCGCCGCATCTCCCGTCATAAGTGAGATCAAGATCCGTGAG
AGTGTGAAAGGTGTGAAAGATAGCGTGGAGGCATTGAAGCTGTATGAAGA
CTTTGTCAATACCAAGGATTTCTATGGTGTCAAGAAATCATTGCGTGTTC
CACCCGTGTCGGACATCCGCCGGGACTGCCGTCGAATTATCGCTGGCTTG
GAGGGTTCGGTAAAAAAAGATACCGATAAGGCGTACAGCGAATTTATTGT
AAGCTTGGAACAGGTTGACCTTCTGGCAACCAAGGCTATTCAAAATGACC
AGAAGATCAAGGATGAGGAGCTCGCGCAATTGACTGCACGATTTGCAGAG
GCGCAAGCGAGACTCGACAAAGTTCTGAAATTAGTTTTGACCACCCGCTA
CGCCACTGAGCCCGTGAACGTCCGTTTAGAAACTGAGAAAACGGAATTGT
GAATGCGGGAGACGCAGGCATCCTACGTCTCCGTCCGTTACTGTCTTTCG
GACATGATCATTGTTACGCGGCTCCTAATCATTTTGGCCGTGTTCCTCGC
GGCCATCGAGGCTTTTCATTTTTCTGGAAGAAATGGTGGATTCCCTCGTC
GAATTCATCGGTCGAACACGCATACTAACGACGACAACGGATTCGAGAGA
AGAGAGCTTATTCACACAGCTACTACCGCCCTGGGAGCCATAGGCGCATT
TGGGAGCATCCTTTTAAGCCTTCCTAGTGTCGCGGGCGCCGCATCTCCCG
TCATAAGTGAGATCAAGATCCGTGAGAGTGTGAAAGGTGTGAAAGATAGC
GTGGAGGCATTGAAGCTGTATGAAGACTTTGTCAATACCAAGGATTTCTA
TGGTGTCAAGAAATCATTGCGTGTTCCACCCGTGTCGGACATCCGCCGGG
ACTGCCGTCGAATTATCGCTGGCTTGGAGGGTTCGGTAAAAAAAGATACC
GATAAGGCGTACAGCGAATTTATTGTAAGCTTGGAACAGGTTGACCTTCT
GGCAACCAAGGCTATTCAAAATGACCAGAAGATCAAGGATGAGGAGCTCG
CGCAATTGACTGCACGATTTGCAGAGGCGCAAGCGAGACTCGACAAAGTT
CTGAAATTAGTTTTGACCACCCGCTACGCCACTGAGCCCGTGAACGTCCG
TTTAGAAACTGAGAAAACGGAATTGTGAATGCGGGAGACGCAGGCATCCT
ACGTCTCCGTCCGTTACTGTCTTTCGGACATGATCATTGTTACGCGGCTC
CTAATCATTTTGGCCGTGTTCCTCGCGGCCATCGAGGCTTTTCATTTTTC
TGGAAGAAATGGTGGATTCCCTCGTCGAATTCATCGGTCGAACACGCATA
CTAACGACGACAACGGATTCGAGAGAAGAGAGCTTATTCACACAGCTACT
ACCGCCCTGGGAGCCATAGGCGCATTTGGGAGCATCCTTTTAAGCCTTCC
TAGTGTCGCGGGCGCCGCATCTCCCGTCATAAGTGAGATCAAGATCCGTG
AGAGTGTGAAAGGTGTGAAAGATAGCGTGGAGGCATTGAAGCTGTATGAA
GACTTTGTCAATACCAAGGATTTCTATGGTGTCAAGAAATCATTGCGTGT
TCCACCCGTGTCGGACATCCGCCGGGACTGCCGTCGAATTATCGCTGGCT
TGGAGGGTTCGGTAAAAAAAGATACCGATAAGGCGTACAGCGAATTTATT
GTAAGCTTGGAACAGGTTGACCTTCTGGCAACCAAGGCTATTCAAAATGA
CCAGAAGATCAAGGATGAGGAGCTCGCGCAATTGACTGCACGATTTGCAG
AGGCGCAAGCGAGACTCGACAAAGTTCTGAAATTAGTTTTGACCACCCGC
TACGCCACTGAGCCCGTGAACGTCCGTTTAGAAACTGAGAAAACGGAATT
GTGA
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Synonyms
Publications