EWM27610.1, cds3055 (CDS) Nannochloropsis gaditana

Overview
NameEWM27610.1
Unique Namecds3055
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:616429..616437 +
Alignment locationCM002460.1:616577..616667 +
Alignment locationCM002460.1:616744..616843 +
Alignment locationCM002460.1:616930..617455 +

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Properties
Property NameValue
Protein idEWM27610.1
ProductPsbQ-like domain protein
Orig transcript idgnl|cribi|Naga_100069g2.5329.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:616429..616437 +
CM002460.1supercontigCM002460.1:616577..616667 +
CM002460.1supercontigCM002460.1:616744..616843 +
CM002460.1supercontigCM002460.1:616930..617455 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR023222PsbQ-like_domain
Homology
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BLAST of EWM27610.1 vs. NCBI_GenBank
Match: gi|585109878|gb|EWM27610.1| (PsbQ-like domain protein [Nannochloropsis gaditana])

HSP 1 Score: 489.189 bits (1258), Expect = 8.752e-175
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0 
Query:    1 MRETQASYVSVRYCLSDMIIVTRLLIILAVFLAAIEAFHFSGRNGGFPRRIHRSNTHTNDDNGFERRELIHTATTALGAIGAFGSILLSLPSVAGAASPVISEIKIRESVKGVKDSVEALKLYEDFVNTKDFYGVKKSLRVPPVSDIRRDCRRIIAGLEGSVKKDTDKAYSEFIVSLEQVDLLATKAIQNDQKIKDEELAQLTARFAEAQARLDKVLKLVLTTRYATEPVNVRLETEKTEL 241
            MRETQASYVSVRYCLSDMIIVTRLLIILAVFLAAIEAFHFSGRNGGFPRRIHRSNTHTNDDNGFERRELIHTATTALGAIGAFGSILLSLPSVAGAASPVISEIKIRESVKGVKDSVEALKLYEDFVNTKDFYGVKKSLRVPPVSDIRRDCRRIIAGLEGSVKKDTDKAYSEFIVSLEQVDLLATKAIQNDQKIKDEELAQLTARFAEAQARLDKVLKLVLTTRYATEPVNVRLETEKTEL
Sbjct:    1 MRETQASYVSVRYCLSDMIIVTRLLIILAVFLAAIEAFHFSGRNGGFPRRIHRSNTHTNDDNGFERRELIHTATTALGAIGAFGSILLSLPSVAGAASPVISEIKIRESVKGVKDSVEALKLYEDFVNTKDFYGVKKSLRVPPVSDIRRDCRRIIAGLEGSVKKDTDKAYSEFIVSLEQVDLLATKAIQNDQKIKDEELAQLTARFAEAQARLDKVLKLVLTTRYATEPVNVRLETEKTEL 241
The following BLAST results are available for this feature:
BLAST of EWM27610.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585109878|gb|EWM27610.1|8.752e-175100.00PsbQ-like domain protein [Nannochloropsis gaditana... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3063rna3063Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications