rna306, rna306 (mRNA) Nannochloropsis gaditana

Overview
Namerna306
Unique Namerna306
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1824
Alignment locationCM002455.1:757777..760581 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100026g9.10651.mrna
Orig protein idgnl|cribi|Naga_100026g9.10651
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:757777..760581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100026g9gene295Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna306rna306-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30397.1cds306Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna306 ID=rna306|Name=rna306|organism=Nannochloropsis gaditana|type=mRNA|length=1824bp
CAAAGCATGTATGGGCTACATTGAGAACCATAGCATGCGCTTAAAGGGCG
CGGGAGCTGGCATGTCTGTGAACCATGTCTAGATGGGGCGAAGCCTCCTA
CCCCACCCGTCCTCTCTCATGCTCTCGCACCCCTCCTCCAGGCTCTTGAG
TATCATGACTACCTCTTTAGCGGACATGATTCTCGGTAACAGGAAGCGTA
CCTGCGACCTATACACAGCAGAAATGACGAGTGGAACAACCCCGCCATTC
CTCCCGGCGCAAAAACTGAAAGTGGCAGTCAAGGTCGATCAGGAGTACAA
AATTCCTTGCAGCTCGCCCACTGTACATACATCATCGACAAAGCAGGAAA
GCGAAGCCACATCTGCCCCAGGAAATGAAGAAACGCGGCACAGAGGTCCG
AGCGTGCTTGCTGGGCAAGGCAAAGCCAAGGGGGAAGCCACCGATACACT
AAATATCCTCAATTCTCTGCGAAACGAAGAAGCCGAGAGGGAGCTTCGAC
AATACAGAGGGAAATATGGCGGCTCGCGCGCAGCCAGCAGAGGCGCTTTG
GTGGCTTACAAAGGGAATGATGCAGGGGGAGCCATGGTAAGTAGGTCGAA
CAAGCGGGACGGGAGAACTCCCCCAGGCGCAGCGGCCGCAGCAGCCGCCG
GCATCGGCAACTCCTCGGCTCTGGCTTTGCACCGCACCCCCGCAAAGGTC
CCGACGCCTACATGGCACGCGCCGTGGAAGCTGCATGCGGTGGTGGCGGG
TCACTTGGGGTGGGTGCGGGCGGTGGCCTTCGACCCGGCGAACGAGTGGT
TCGTGACGGGCTCAGCGGATCGAACCATCAAAGTCTGGGATCTGGCCAAG
TGCGCGGCGGGGGCGGAGGGGGGCTTGCGCCTGACCTTAACGGGCCACAT
TTCGGCCGTGCGCGCCTTGGCGGTATCAAACAGACACCCCTATTTGTTCT
CCGTGGCCGAGGATAAGACCGTCAAGTGCTGGGACCTAGAGCAGAACAAA
GTCATCCGCCACTACCACGGCCACCTCTCAGGCGTCTACAGCCTGGCGCT
GCACCCGACACTCGATGTCCTTGTCACGGGCGGGCGGGACTCTGTGGCAC
GCGTGTGGGACATGCGCACCAAGATGCAGGTGCACGTGCTGGGCGGGCAC
ACCAACACAGTCGGGGCCCTCGCCACCAATTCCGTGGACCCGCAGATCAT
CACTGGCTCCTACGATTCCACGATCAAGCTCTGGGATATCGTTGCTGGCA
AGTCGATGGCTACCCTCACGAACCACAAAAAAGCTGTGCGCGACCTGAAG
GTGCACCCGAAGGAGCTCTCATTCGTCTCCGGTGCCCAAGACAACCTGAA
AAAATGGCAAGTCCGCGACGGGAAGTTCTTGAAGAACCTGAGTGGTCACA
ATGCCGTCATCAACACGCTGGCCATAAATGAGGACAATGTACTGGTCTCA
TGCGGGGATAATGGAAGCCTTCGTTTTTGGGACTACCAGACTGGATATTG
CTTTCAGAGGCTGGAGACGATTGTGCAACCGGGCTCCTTGGACTGCGAGG
CAGGGATCTATGCTTCGGCTTTCGATATGAGCGGGACCCGCTTTTTAACG
TGCGAGGCAGACAAGACGGTCAAAATCTGGAAAGAGGACGCGGAAGCAAG
CCCCGAGACTCACCCGATCGACATGGAGGCCTGGAAGCAAGAGTGCCTTT
CCCATAAGCGGTGGTAAAGGAAATAAAGATGGACAGACGGCATGCTAGTA
GACTTTGTTGAGATTAGTGTTTGTGTTCGTCTTTATGGCTTTGAGTGGGC
CCCCTTAACCTATACACACATGAC
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protein sequence of rna306

>rna306-protein ID=rna306-protein|Name=rna306|organism=Nannochloropsis gaditana|type=polypeptide|length=570bp
MHKPTTAGTPPVLVPPTKANVLAAGGPSGNTSINATSSVPPPAVYTIPPS
PAAQSSASSLPSDASPRKQHPHLQAQYHTQLSHQQQQQQQQQHHALHHHQ
QGYQGSGTRGFVDLLRSLGHLTLNNASEIREELRHLRRRRGKQEEAVMLS
ELAALASCLNELVMSMVTSSSSNSSGPGGSGSGSTEEGGGEGDSSSKAGG
GAVAVEPSRRALAGLFSYEGLMPPIPHPAVPAPSTALGDAALLHYCFDFL
VEGRLQYRKQLGDLALVCRQWRDLAQADRFWKPVVLQLFPRLSPALADHD
EEDGASGPDPDAAALTEAAVDGAGAGASSEPSTSPGGRAGWHRKYLIQFG
RCLFDRPIRQGPWHEGITLSFDLHDEQDGTRLFSSTGPIRFTGTTIPGIT
AMKLTGRRRRVTAPFSAASRDRGLGNLSSIEELFQEGDSRDYPVSFTIRV
TARDERTGKMALLFSSAKRTKRWVEPLGEDMGVPQGTLLVNQGWSRVTIP
STDLAMQMLTVFYVAPVEGQPETISAAERLYSVLTLDCAFMLQCKTEDQE
QIGRFILAALENGPGVERDG
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mRNA from alignment at CM002455.1:757777..760581+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna306 ID=rna306|Name=rna306|organism=Nannochloropsis gaditana|type=mRNA|length=2805bp|location=Sequence derived from alignment at CM002455.1:757777..760581+ (Nannochloropsis gaditana)
CGCCCTTTAAGCGCATGCTATGGTTCTCAATGTAGCCCATACATGCTTTG CCCACAATCTCTTCCTGGGAACGAGGTTGGGATAAAAGCATTTTCCCTAC TTGCGAGGGCATCGGGCCCtgcgccggcggcggcggaagaaggcgatTAT ATTGCTCTATCGCGCTTACAGGACATGCCTGACGCAATTGTGGTACCACG TCCTTGACCCACGAGTGGTGACTTTTCCATGAATTGTAACGAACAGGTTG ACTGCGCCGGTCTTCATTCGTATTCCAATGCAGCACGGACCAGGTCTGGA CGTCGTGGATAGATCCAGGAGATCCAGCCGCCTCGTAGCAGTTTGTCTGC ACAAATGCACAAACCCACTACCGCTGGAACACCGCCTGTCCTAGTACCGC CTACCAAGGCGAATGTGTTAGCGGCGGGCGGTCCGAGTGGTAACACAAGC ATCAATGCAACCTCCTCTGTGCCGCCGCCTGCTGTGTATACgattcctcc gtccccggcTGCGCAGagctccgcttcctcccttccctcagaTGCCTCTC CTAGGAAGCAACACCCGCATCTGCAGGCACAGTACCACACGCAACTCTCa caccagcagcaacagcagcaacagcagcaacatcaCGCACTGCATCACCA CCAACAAGGCTATCAAGGGAGCGGAACCCGAGGGTTCGTGGACTTGCTGC GCTCGTTGGGCCACTTGACGCTCAACAACGCGTCTGAGATCCGGGAGGAG CTACGGCATTTGCGCCGGCGCCGTGGCAAGCAAGAGGAGGCTGTGATGTT GTCCGAACTGGCGGCGCTGGCGTCTTGCCTGAACGAGTTGGTCATGTCCA TGGTGACaagtagcagcagcaacagcagtggGCCCGGTGGCAGTGGCTCG GGTTCTacggaagagggtggaggagaaggtgacagcagcagcaaagccgg gggcggggcggtggctgTGGAGCCCTCTCGACGGGCGCTGGCAGGCCTCT TCTCCTACGAGGGTCTTAtgccccccatccctcacCCGGCggtgcccgcc ccctccaccgccctcggcGACGCGGCCTTGCTGCACTATTGCTTCGACTT TCTGGTCGAGGGTCGGCTCCAGTATCGAAAACAGCTGGGAGACCTGGCTC TGGTCTGTCGGCAGTGGCGGGACCTGGCGCAGGCCGACAGGTTTTGGAAG CCCGTCGTCCTGCagctcttcccccgcctctcccccgccctggcggacca cgacgaggaggacggggcctCGGGGCCGGATCCAGACGCGGCGGCGCTTA CGGAGGCCGCGGtggacggggcgggggcgggggcaagtTCCGAGCCGTCC ACTTCtccgggcgggcgggcaggcTGGCACCGGAAGTACTTGATCCAGTT CGGTCGCTGCTTGTTCGACCGGCCCATCCGCCAAGGGCCCTGGCACGAGG GTATCACTCTCTCCTTCGACCTACACGACGAGCAGGACGGCacccgcctc ttctcctcgacaGGGCCCATCCGCTTCACGGGCACCACCATCCCGGGCAT GTGAGTcacaaggggggaggacaaggggggagggctccgCTAGTTGGGCG TGGCGGTCTCATCGTGTcttgtcttttccttccccgcgcaGCACGGCCAT GAAGCTGAcaggccgccgccgccgggtcacggcccccttctccgccgcaT CCCGGGACCGCGGCCTCGGGaacctttcctccatcgAGGAGCTTTTCCAG GAGGGCGACTCCCGCGACTACCCCGTGTCCTTCACCATCCGGGTCACCGC CCGCGACGAGCGCACGGGCAAGAtggctcttcttttctcctcggCCAAGC GGACGAAGCGGTGGGTGGAGCCGCTGGGCGAGGACATGGGCGTTCCGCAG GGCACGCTCCTTGTCAACCAGGGGTGGTCGCGCGTCACGATCCCGTCCAC GGACCTGGCCATGCAGATGCTGACGGTATTCTACGTGGCGCCCGTGGAGG GACAGCCGGAGACCATTAGCGCGGCGGAACGGCTGTACTCGGTGCTGACG CTGGACTGCGCCTTTATGCTCCAGTGCAAGACAGAGGTGGGTAGGGAGGC AAAAAAAGCAGGGCGGGGATTGGATAGGAAGCTGTCAGGCGTGAGATGTC AGAGAAACGCTTTCGTCCAGggctcatttttcttttcttctttctctcat cTTGCACGGCAGGATCAAGAGCAGATCGGACGCTTCATcctggccgcctt ggagAATGGGCCGGGCGTGGAACGGGATGGCTGACGGGCTAGGTCGGAAA gtggtggatggagggagggagaggaagcaacgGTGATATCCTGAATGCCC GGTCAAACTTGAATCAGAGGGCTGTTTGATGCGGAAGAATGGTGTGAAAG GAGGATAGAGGGGTTTTCCACCTCAGGAAAGCCTGAGTGGGGGAAACCCT CTCGCTATTTCTATGTGGATAGAGCGATTGAGAGAAGATAGGTGAGAATC CGAGTGGACAGGGTGGGTGTCACCatagagcgggaggggaaaagtcTCAA TCGCGGCCGTCGTGCAAGTCTCCTTTACCAACATGTGGAGTGGCACCTTC CGTGGGGCgtaaggagggcgtggcaaGGGTGTATTGCCATGACAAGCCGA CGCGAAGGGGAAGTAAGGACGTCGACAGCCACGCTTGGCCAGTGTTTGAT CAACGagttttcttcttttgccgcACTGATATTTCCCATGTCTACAAGCA CTGCCGCCGAATCCAGTCGTAGTCGGGGAGGTTTGCCACGGGGCCGATGG CCGCC
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Coding sequence (CDS) from alignment at CM002455.1:757777..760581+

>rna306 ID=rna306|Name=rna306|organism=Nannochloropsis gaditana|type=CDS|length=5139bp|location=Sequence derived from alignment at CM002455.1:757777..760581+ (Nannochloropsis gaditana)
ATGCACAAACCCACTACCGCTGGAACACCGCCTGTCCTAGTACCGCCTAC
CAAGGCGAATGTGTTAGCGGCGGGCGGTCCGAGTGGTAACACAAGCATCA
ATGCAACCTCCTCTGTGCCGCCGCCTGCTGTGTATACgattcctccgtcc
ccggcTGCGCAGagctccgcttcctcccttccctcagaTGCCTCTCCTAG
GAAGCAACACCCGCATCTGCAGGCACAGTACCACACGCAACTCTCacacc
agcagcaacagcagcaacagcagcaacatcaCGCACTGCATCACCACCAA
CAAGGCTATCAAGGGAGCGGAACCCGAGGGTTCGTGGACTTGCTGCGCTC
GTTGGGCCACTTGACGCTCAACAACGCGTCTGAGATCCGGGAGGAGCTAC
GGCATTTGCGCCGGCGCCGTGGCAAGCAAGAGGAGGCTGTGATGTTGTCC
GAACTGGCGGCGCTGGCGTCTTGCCTGAACGAGTTGGTCATGTCCATGGT
GACaagtagcagcagcaacagcagtggGCCCGGTGGCAGTGGCTCGGGTT
CTacggaagagggtggaggagaaggtgacagcagcagcaaagccgggggc
ggggcggtggctgTGGAGCCCTCTCGACGGGCGCTGGCAGGCCTCTTCTC
CTACGAGGGTCTTAtgccccccatccctcacCCGGCggtgcccgccccct
ccaccgccctcggcGACGCGGCCTTGCTGCACTATTGCTTCGACTTTCTG
GTCGAGGGTCGGCTCCAGTATCGAAAACAGCTGGGAGACCTGGCTCTGGT
CTGTCGGCAGTGGCGGGACCTGGCGCAGGCCGACAGGTTTTGGAAGCCCG
TCGTCCTGCagctcttcccccgcctctcccccgccctggcggaccacgac
gaggaggacggggcctCGGGGCCGGATCCAGACGCGGCGGCGCTTACGGA
GGCCGCGGtggacggggcgggggcgggggcaagtTCCGAGCCGTCCACTT
CtccgggcgggcgggcaggcTGGCACCGGAAGTACTTGATCCAGTTCGGT
CGCTGCTTGTTCGACCGGCCCATCCGCCAAGGGCCCTGGCACGAGGGTAT
CACTCTCTCCTTCGACCTACACGACGAGCAGGACGGCacccgcctcttct
cctcgacaGGGCCCATCCGCTTCACGGGCACCACCATCCCGGGCATCACG
GCCATGAAGCTGAcaggccgccgccgccgggtcacggcccccttctccgc
cgcaTCCCGGGACCGCGGCCTCGGGaacctttcctccatcgAGGAGCTTT
TCCAGGAGGGCGACTCCCGCGACTACCCCGTGTCCTTCACCATCCGGGTC
ACCGCCCGCGACGAGCGCACGGGCAAGAtggctcttcttttctcctcggC
CAAGCGGACGAAGCGGTGGGTGGAGCCGCTGGGCGAGGACATGGGCGTTC
CGCAGGGCACGCTCCTTGTCAACCAGGGGTGGTCGCGCGTCACGATCCCG
TCCACGGACCTGGCCATGCAGATGCTGACGGTATTCTACGTGGCGCCCGT
GGAGGGACAGCCGGAGACCATTAGCGCGGCGGAACGGCTGTACTCGGTGC
TGACGCTGGACTGCGCCTTTATGCTCCAGTGCAAGACAGAGGATCAAGAG
CAGATCGGACGCTTCATcctggccgccttggagAATGGGCCGGGCGTGGA
ACGGGATGGCTGAATGCACAAACCCACTACCGCTGGAACACCGCCTGTCC
TAGTACCGCCTACCAAGGCGAATGTGTTAGCGGCGGGCGGTCCGAGTGGT
AACACAAGCATCAATGCAACCTCCTCTGTGCCGCCGCCTGCTGTGTATAC
gattcctccgtccccggcTGCGCAGagctccgcttcctcccttccctcag
aTGCCTCTCCTAGGAAGCAACACCCGCATCTGCAGGCACAGTACCACACG
CAACTCTCacaccagcagcaacagcagcaacagcagcaacatcaCGCACT
GCATCACCACCAACAAGGCTATCAAGGGAGCGGAACCCGAGGGTTCGTGG
ACTTGCTGCGCTCGTTGGGCCACTTGACGCTCAACAACGCGTCTGAGATC
CGGGAGGAGCTACGGCATTTGCGCCGGCGCCGTGGCAAGCAAGAGGAGGC
TGTGATGTTGTCCGAACTGGCGGCGCTGGCGTCTTGCCTGAACGAGTTGG
TCATGTCCATGGTGACaagtagcagcagcaacagcagtggGCCCGGTGGC
AGTGGCTCGGGTTCTacggaagagggtggaggagaaggtgacagcagcag
caaagccgggggcggggcggtggctgTGGAGCCCTCTCGACGGGCGCTGG
CAGGCCTCTTCTCCTACGAGGGTCTTAtgccccccatccctcacCCGGCg
gtgcccgccccctccaccgccctcggcGACGCGGCCTTGCTGCACTATTG
CTTCGACTTTCTGGTCGAGGGTCGGCTCCAGTATCGAAAACAGCTGGGAG
ACCTGGCTCTGGTCTGTCGGCAGTGGCGGGACCTGGCGCAGGCCGACAGG
TTTTGGAAGCCCGTCGTCCTGCagctcttcccccgcctctcccccgccct
ggcggaccacgacgaggaggacggggcctCGGGGCCGGATCCAGACGCGG
CGGCGCTTACGGAGGCCGCGGtggacggggcgggggcgggggcaagtTCC
GAGCCGTCCACTTCtccgggcgggcgggcaggcTGGCACCGGAAGTACTT
GATCCAGTTCGGTCGCTGCTTGTTCGACCGGCCCATCCGCCAAGGGCCCT
GGCACGAGGGTATCACTCTCTCCTTCGACCTACACGACGAGCAGGACGGC
acccgcctcttctcctcgacaGGGCCCATCCGCTTCACGGGCACCACCAT
CCCGGGCATCACGGCCATGAAGCTGAcaggccgccgccgccgggtcacgg
cccccttctccgccgcaTCCCGGGACCGCGGCCTCGGGaacctttcctcc
atcgAGGAGCTTTTCCAGGAGGGCGACTCCCGCGACTACCCCGTGTCCTT
CACCATCCGGGTCACCGCCCGCGACGAGCGCACGGGCAAGAtggctcttc
ttttctcctcggCCAAGCGGACGAAGCGGTGGGTGGAGCCGCTGGGCGAG
GACATGGGCGTTCCGCAGGGCACGCTCCTTGTCAACCAGGGGTGGTCGCG
CGTCACGATCCCGTCCACGGACCTGGCCATGCAGATGCTGACGGTATTCT
ACGTGGCGCCCGTGGAGGGACAGCCGGAGACCATTAGCGCGGCGGAACGG
CTGTACTCGGTGCTGACGCTGGACTGCGCCTTTATGCTCCAGTGCAAGAC
AGAGGATCAAGAGCAGATCGGACGCTTCATcctggccgccttggagAATG
GGCCGGGCGTGGAACGGGATGGCTGAATGCACAAACCCACTACCGCTGGA
ACACCGCCTGTCCTAGTACCGCCTACCAAGGCGAATGTGTTAGCGGCGGG
CGGTCCGAGTGGTAACACAAGCATCAATGCAACCTCCTCTGTGCCGCCGC
CTGCTGTGTATACgattcctccgtccccggcTGCGCAGagctccgcttcc
tcccttccctcagaTGCCTCTCCTAGGAAGCAACACCCGCATCTGCAGGC
ACAGTACCACACGCAACTCTCacaccagcagcaacagcagcaacagcagc
aacatcaCGCACTGCATCACCACCAACAAGGCTATCAAGGGAGCGGAACC
CGAGGGTTCGTGGACTTGCTGCGCTCGTTGGGCCACTTGACGCTCAACAA
CGCGTCTGAGATCCGGGAGGAGCTACGGCATTTGCGCCGGCGCCGTGGCA
AGCAAGAGGAGGCTGTGATGTTGTCCGAACTGGCGGCGCTGGCGTCTTGC
CTGAACGAGTTGGTCATGTCCATGGTGACaagtagcagcagcaacagcag
tggGCCCGGTGGCAGTGGCTCGGGTTCTacggaagagggtggaggagaag
gtgacagcagcagcaaagccgggggcggggcggtggctgTGGAGCCCTCT
CGACGGGCGCTGGCAGGCCTCTTCTCCTACGAGGGTCTTAtgccccccat
ccctcacCCGGCggtgcccgccccctccaccgccctcggcGACGCGGCCT
TGCTGCACTATTGCTTCGACTTTCTGGTCGAGGGTCGGCTCCAGTATCGA
AAACAGCTGGGAGACCTGGCTCTGGTCTGTCGGCAGTGGCGGGACCTGGC
GCAGGCCGACAGGTTTTGGAAGCCCGTCGTCCTGCagctcttcccccgcc
tctcccccgccctggcggaccacgacgaggaggacggggcctCGGGGCCG
GATCCAGACGCGGCGGCGCTTACGGAGGCCGCGGtggacggggcgggggc
gggggcaagtTCCGAGCCGTCCACTTCtccgggcgggcgggcaggcTGGC
ACCGGAAGTACTTGATCCAGTTCGGTCGCTGCTTGTTCGACCGGCCCATC
CGCCAAGGGCCCTGGCACGAGGGTATCACTCTCTCCTTCGACCTACACGA
CGAGCAGGACGGCacccgcctcttctcctcgacaGGGCCCATCCGCTTCA
CGGGCACCACCATCCCGGGCATCACGGCCATGAAGCTGAcaggccgccgc
cgccgggtcacggcccccttctccgccgcaTCCCGGGACCGCGGCCTCGG
GaacctttcctccatcgAGGAGCTTTTCCAGGAGGGCGACTCCCGCGACT
ACCCCGTGTCCTTCACCATCCGGGTCACCGCCCGCGACGAGCGCACGGGC
AAGAtggctcttcttttctcctcggCCAAGCGGACGAAGCGGTGGGTGGA
GCCGCTGGGCGAGGACATGGGCGTTCCGCAGGGCACGCTCCTTGTCAACC
AGGGGTGGTCGCGCGTCACGATCCCGTCCACGGACCTGGCCATGCAGATG
CTGACGGTATTCTACGTGGCGCCCGTGGAGGGACAGCCGGAGACCATTAG
CGCGGCGGAACGGCTGTACTCGGTGCTGACGCTGGACTGCGCCTTTATGC
TCCAGTGCAAGACAGAGGATCAAGAGCAGATCGGACGCTTCATcctggcc
gccttggagAATGGGCCGGGCGTGGAACGGGATGGCTGA
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Synonyms
Publications