EWM30397.1, cds306 (CDS) Nannochloropsis gaditana

Overview
NameEWM30397.1
Unique Namecds306
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:758131..759326 +
Alignment locationCM002455.1:759418..759862 +
Alignment locationCM002455.1:759989..760060 +

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Properties
Property NameValue
Protein idEWM30397.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100026g9.10651.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:758131..759326 +
CM002455.1supercontigCM002455.1:759418..759862 +
CM002455.1supercontigCM002455.1:759989..760060 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
Homology
BLAST of EWM30397.1 vs. NCBI_GenBank
Match: gi|553182510|ref|XP_005853741.1| (hypothetical protein NGA_0168202 [Nannochloropsis gaditana CCMP526] >gi|422295323|gb|EKU22622.1| hypothetical protein NGA_0168202 [Nannochloropsis gaditana CCMP526] >gi|585113057|gb|EWM30397.1| hypothetical protein Naga_100026g9 [Nannochloropsis gaditana])

HSP 1 Score: 1164.44 bits (3011), Expect = 0.000e+0
Identity = 570/570 (100.00%), Postives = 570/570 (100.00%), Query Frame = 0
Query:    1 MHKPTTAGTPPVLVPPTKANVLAAGGPSGNTSINATSSVPPPAVYTIPPSPAAQSSASSLPSDASPRKQHPHLQAQYHTQLSHQQQQQQQQQHHALHHHQQGYQGSGTRGFVDLLRSLGHLTLNNASEIREELRHLRRRRGKQEEAVMLSELAALASCLNELVMSMVTSSSSNSSGPGGSGSGSTEEGGGEGDSSSKAGGGAVAVEPSRRALAGLFSYEGLMPPIPHPAVPAPSTALGDAALLHYCFDFLVEGRLQYRKQLGDLALVCRQWRDLAQADRFWKPVVLQLFPRLSPALADHDEEDGASGPDPDAAALTEAAVDGAGAGASSEPSTSPGGRAGWHRKYLIQFGRCLFDRPIRQGPWHEGITLSFDLHDEQDGTRLFSSTGPIRFTGTTIPGITAMKLTGRRRRVTAPFSAASRDRGLGNLSSIEELFQEGDSRDYPVSFTIRVTARDERTGKMALLFSSAKRTKRWVEPLGEDMGVPQGTLLVNQGWSRVTIPSTDLAMQMLTVFYVAPVEGQPETISAAERLYSVLTLDCAFMLQCKTEDQEQIGRFILAALENGPGVERDG 570
            MHKPTTAGTPPVLVPPTKANVLAAGGPSGNTSINATSSVPPPAVYTIPPSPAAQSSASSLPSDASPRKQHPHLQAQYHTQLSHQQQQQQQQQHHALHHHQQGYQGSGTRGFVDLLRSLGHLTLNNASEIREELRHLRRRRGKQEEAVMLSELAALASCLNELVMSMVTSSSSNSSGPGGSGSGSTEEGGGEGDSSSKAGGGAVAVEPSRRALAGLFSYEGLMPPIPHPAVPAPSTALGDAALLHYCFDFLVEGRLQYRKQLGDLALVCRQWRDLAQADRFWKPVVLQLFPRLSPALADHDEEDGASGPDPDAAALTEAAVDGAGAGASSEPSTSPGGRAGWHRKYLIQFGRCLFDRPIRQGPWHEGITLSFDLHDEQDGTRLFSSTGPIRFTGTTIPGITAMKLTGRRRRVTAPFSAASRDRGLGNLSSIEELFQEGDSRDYPVSFTIRVTARDERTGKMALLFSSAKRTKRWVEPLGEDMGVPQGTLLVNQGWSRVTIPSTDLAMQMLTVFYVAPVEGQPETISAAERLYSVLTLDCAFMLQCKTEDQEQIGRFILAALENGPGVERDG
Sbjct:    1 MHKPTTAGTPPVLVPPTKANVLAAGGPSGNTSINATSSVPPPAVYTIPPSPAAQSSASSLPSDASPRKQHPHLQAQYHTQLSHQQQQQQQQQHHALHHHQQGYQGSGTRGFVDLLRSLGHLTLNNASEIREELRHLRRRRGKQEEAVMLSELAALASCLNELVMSMVTSSSSNSSGPGGSGSGSTEEGGGEGDSSSKAGGGAVAVEPSRRALAGLFSYEGLMPPIPHPAVPAPSTALGDAALLHYCFDFLVEGRLQYRKQLGDLALVCRQWRDLAQADRFWKPVVLQLFPRLSPALADHDEEDGASGPDPDAAALTEAAVDGAGAGASSEPSTSPGGRAGWHRKYLIQFGRCLFDRPIRQGPWHEGITLSFDLHDEQDGTRLFSSTGPIRFTGTTIPGITAMKLTGRRRRVTAPFSAASRDRGLGNLSSIEELFQEGDSRDYPVSFTIRVTARDERTGKMALLFSSAKRTKRWVEPLGEDMGVPQGTLLVNQGWSRVTIPSTDLAMQMLTVFYVAPVEGQPETISAAERLYSVLTLDCAFMLQCKTEDQEQIGRFILAALENGPGVERDG 570          
BLAST of EWM30397.1 vs. NCBI_GenBank
Match: gi|585103442|gb|EWM22815.1| (hypothetical protein Naga_100437g2 [Nannochloropsis gaditana])

HSP 1 Score: 129.798 bits (325), Expect = 2.952e-28
Identity = 91/283 (32.16%), Postives = 134/283 (47.35%), Query Frame = 0
Query:  258 RKQLGDLALVCRQWRDLAQADRFWKPVVLQLFPRLSPALADHDEEDGASGPDPDAAALTEAAVDGAGAGASSEPSTSPGGRAGWHRKYLIQFGRCLFDRPIRQGP-WHEGITLSFDLHDEQDGTRLFSSTGPIRFTGTTIPGITAMKLTG-RRRRVTAPFSAASRDRGLGNLSSIEELFQEGDSRDYPVSFTIRVTARDERTGKMALLFSSAKRTKRWVEPLGEDMG---VPQGTLLVNQGWSRVTIPS-TDLAMQMLTVFYVAPVEGQP-----ETISAAER 529
            R  L  L  V R WR  A  DRFW+P+V    P L+       +E   + P P                               +R+  +++ RCL    +  G  WH  + LSF+++D QD  RLF ++GP+    +T  G+TA++LTG +R  V  PFSA SRD       +I          D+PV   +RV A D RTG  AL+++S  +TKR V+    +     +P+ +L V + WSR  + + T  A+++ T FYV+PV+  P      T SA ER
Sbjct:  268 RVNLAPLLTVARLWRATASQDRFWRPIVSWTLPTLTM----DAKETRTTKPFP-------------------------------YRQAFLRYARCLALPVVGDGEEWHAHVLLSFEIYDVQDSMRLFVASGPLEVIQSTESGLTALRLTGTKRSEVCRPFSAKSRDPVNKRFENISAYLCHSWRPDFPVGLRVRVVATDARTGTQALIYNSEPKTKRSVKDSTLNFWRRFLPRHSLFVWEAWSRWVLQNGTQEAVEISTSFYVSPVQKSPVSSASSTGSAEER 515          
BLAST of EWM30397.1 vs. NCBI_GenBank
Match: gi|585103262|gb|EWM22694.1| (hypothetical protein Naga_100340g3 [Nannochloropsis gaditana])

HSP 1 Score: 115.546 bits (288), Expect = 1.965e-23
Identity = 96/307 (31.27%), Postives = 145/307 (47.23%), Query Frame = 0
Query:  220 GLMPPIPHPAVPAPSTALGDAALLHYCFDFLVE-GRLQ-YRKQLGDLALVCRQWRDLAQADRFWKPVVLQLFPRLS-PALADHDEEDGASGPDPDAAALTEAAVDGAGAGASSEPSTSPGGRAGWHRKYLIQFGRCLFDRPIRQG-PWHEGITLSFDLHDEQDGTRLFSSTGPIRFTGTTIPGITAMKLTG-RRRRVTAP-FSAASRDRGLGNLSSIEELFQEGDSRDYPVSFTIRVTARDERTGKMALLFSSAKRTKRWVE-PLGE-DMGVPQGTL-LVNQGWSRVTIPSTDLAMQMLTV-FYVAP 516
              +P  P P++ A  +AL    LLH  F FL+   R Q  R  L  L+LV R++  LA  + +W+PV   L P L+ P       ++                 D                     R YL+++G CL  R    G    +G +LSF++ D  DG R+ S++GPIR       G T++++ G  RR V  P FSAASRD      +S+E+ F  G   ++  + ++RVT  DERTG+MALL+S+ K      E PL   +  +P+G++      WS +  P+ D     +T+ F+V P
Sbjct:  155 AFLPSAPLPSLSARLSALSSPDLLHMIFPFLLHRARPQEARAVLTTLSLVNRRFHALACWEEYWRPVAEGLLPVLAVPRRHSPRRQEEEKAARGAGEGGGRRGED--------------------FRGYLLKYGHCLLHRRAWMGEALEDGFSLSFEVWDAMDGLRMLSASGPIRVQMDQQGGFTSLRMGGTHRREVPGPAFSAASRDPLRRRFASMEDYFGRGHLPEFGAALSVRVTVTDERTGRMALLWSTRKDAAYLTEAPLAYWEPFLPEGSISCFLDHWSPLMCPAYDGESMTVTIGFHVCP 441          
The following BLAST results are available for this feature:
BLAST of EWM30397.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|553182510|ref|XP_005853741.1|0.000e+0100.00hypothetical protein NGA_0168202 [Nannochloropsis ... [more]
gi|585103442|gb|EWM22815.1|2.952e-2832.16hypothetical protein Naga_100437g2 [Nannochloropsi... [more]
gi|585103262|gb|EWM22694.1|1.965e-2331.27hypothetical protein Naga_100340g3 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna306rna306Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications