EWM30397.1, cds306 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30397.1 vs. NCBI_GenBank
Match: gi|553182510|ref|XP_005853741.1| (hypothetical protein NGA_0168202 [Nannochloropsis gaditana CCMP526] >gi|422295323|gb|EKU22622.1| hypothetical protein NGA_0168202 [Nannochloropsis gaditana CCMP526] >gi|585113057|gb|EWM30397.1| hypothetical protein Naga_100026g9 [Nannochloropsis gaditana]) HSP 1 Score: 1164.44 bits (3011), Expect = 0.000e+0 Identity = 570/570 (100.00%), Postives = 570/570 (100.00%), Query Frame = 0
Query: 1 MHKPTTAGTPPVLVPPTKANVLAAGGPSGNTSINATSSVPPPAVYTIPPSPAAQSSASSLPSDASPRKQHPHLQAQYHTQLSHQQQQQQQQQHHALHHHQQGYQGSGTRGFVDLLRSLGHLTLNNASEIREELRHLRRRRGKQEEAVMLSELAALASCLNELVMSMVTSSSSNSSGPGGSGSGSTEEGGGEGDSSSKAGGGAVAVEPSRRALAGLFSYEGLMPPIPHPAVPAPSTALGDAALLHYCFDFLVEGRLQYRKQLGDLALVCRQWRDLAQADRFWKPVVLQLFPRLSPALADHDEEDGASGPDPDAAALTEAAVDGAGAGASSEPSTSPGGRAGWHRKYLIQFGRCLFDRPIRQGPWHEGITLSFDLHDEQDGTRLFSSTGPIRFTGTTIPGITAMKLTGRRRRVTAPFSAASRDRGLGNLSSIEELFQEGDSRDYPVSFTIRVTARDERTGKMALLFSSAKRTKRWVEPLGEDMGVPQGTLLVNQGWSRVTIPSTDLAMQMLTVFYVAPVEGQPETISAAERLYSVLTLDCAFMLQCKTEDQEQIGRFILAALENGPGVERDG 570
MHKPTTAGTPPVLVPPTKANVLAAGGPSGNTSINATSSVPPPAVYTIPPSPAAQSSASSLPSDASPRKQHPHLQAQYHTQLSHQQQQQQQQQHHALHHHQQGYQGSGTRGFVDLLRSLGHLTLNNASEIREELRHLRRRRGKQEEAVMLSELAALASCLNELVMSMVTSSSSNSSGPGGSGSGSTEEGGGEGDSSSKAGGGAVAVEPSRRALAGLFSYEGLMPPIPHPAVPAPSTALGDAALLHYCFDFLVEGRLQYRKQLGDLALVCRQWRDLAQADRFWKPVVLQLFPRLSPALADHDEEDGASGPDPDAAALTEAAVDGAGAGASSEPSTSPGGRAGWHRKYLIQFGRCLFDRPIRQGPWHEGITLSFDLHDEQDGTRLFSSTGPIRFTGTTIPGITAMKLTGRRRRVTAPFSAASRDRGLGNLSSIEELFQEGDSRDYPVSFTIRVTARDERTGKMALLFSSAKRTKRWVEPLGEDMGVPQGTLLVNQGWSRVTIPSTDLAMQMLTVFYVAPVEGQPETISAAERLYSVLTLDCAFMLQCKTEDQEQIGRFILAALENGPGVERDG
Sbjct: 1 MHKPTTAGTPPVLVPPTKANVLAAGGPSGNTSINATSSVPPPAVYTIPPSPAAQSSASSLPSDASPRKQHPHLQAQYHTQLSHQQQQQQQQQHHALHHHQQGYQGSGTRGFVDLLRSLGHLTLNNASEIREELRHLRRRRGKQEEAVMLSELAALASCLNELVMSMVTSSSSNSSGPGGSGSGSTEEGGGEGDSSSKAGGGAVAVEPSRRALAGLFSYEGLMPPIPHPAVPAPSTALGDAALLHYCFDFLVEGRLQYRKQLGDLALVCRQWRDLAQADRFWKPVVLQLFPRLSPALADHDEEDGASGPDPDAAALTEAAVDGAGAGASSEPSTSPGGRAGWHRKYLIQFGRCLFDRPIRQGPWHEGITLSFDLHDEQDGTRLFSSTGPIRFTGTTIPGITAMKLTGRRRRVTAPFSAASRDRGLGNLSSIEELFQEGDSRDYPVSFTIRVTARDERTGKMALLFSSAKRTKRWVEPLGEDMGVPQGTLLVNQGWSRVTIPSTDLAMQMLTVFYVAPVEGQPETISAAERLYSVLTLDCAFMLQCKTEDQEQIGRFILAALENGPGVERDG 570
BLAST of EWM30397.1 vs. NCBI_GenBank
Match: gi|585103442|gb|EWM22815.1| (hypothetical protein Naga_100437g2 [Nannochloropsis gaditana]) HSP 1 Score: 129.798 bits (325), Expect = 2.952e-28 Identity = 91/283 (32.16%), Postives = 134/283 (47.35%), Query Frame = 0
Query: 258 RKQLGDLALVCRQWRDLAQADRFWKPVVLQLFPRLSPALADHDEEDGASGPDPDAAALTEAAVDGAGAGASSEPSTSPGGRAGWHRKYLIQFGRCLFDRPIRQGP-WHEGITLSFDLHDEQDGTRLFSSTGPIRFTGTTIPGITAMKLTG-RRRRVTAPFSAASRDRGLGNLSSIEELFQEGDSRDYPVSFTIRVTARDERTGKMALLFSSAKRTKRWVEPLGEDMG---VPQGTLLVNQGWSRVTIPS-TDLAMQMLTVFYVAPVEGQP-----ETISAAER 529
R L L V R WR A DRFW+P+V P L+ +E + P P +R+ +++ RCL + G WH + LSF+++D QD RLF ++GP+ +T G+TA++LTG +R V PFSA SRD +I D+PV +RV A D RTG AL+++S +TKR V+ + +P+ +L V + WSR + + T A+++ T FYV+PV+ P T SA ER
Sbjct: 268 RVNLAPLLTVARLWRATASQDRFWRPIVSWTLPTLTM----DAKETRTTKPFP-------------------------------YRQAFLRYARCLALPVVGDGEEWHAHVLLSFEIYDVQDSMRLFVASGPLEVIQSTESGLTALRLTGTKRSEVCRPFSAKSRDPVNKRFENISAYLCHSWRPDFPVGLRVRVVATDARTGTQALIYNSEPKTKRSVKDSTLNFWRRFLPRHSLFVWEAWSRWVLQNGTQEAVEISTSFYVSPVQKSPVSSASSTGSAEER 515
BLAST of EWM30397.1 vs. NCBI_GenBank
Match: gi|585103262|gb|EWM22694.1| (hypothetical protein Naga_100340g3 [Nannochloropsis gaditana]) HSP 1 Score: 115.546 bits (288), Expect = 1.965e-23 Identity = 96/307 (31.27%), Postives = 145/307 (47.23%), Query Frame = 0
Query: 220 GLMPPIPHPAVPAPSTALGDAALLHYCFDFLVE-GRLQ-YRKQLGDLALVCRQWRDLAQADRFWKPVVLQLFPRLS-PALADHDEEDGASGPDPDAAALTEAAVDGAGAGASSEPSTSPGGRAGWHRKYLIQFGRCLFDRPIRQG-PWHEGITLSFDLHDEQDGTRLFSSTGPIRFTGTTIPGITAMKLTG-RRRRVTAP-FSAASRDRGLGNLSSIEELFQEGDSRDYPVSFTIRVTARDERTGKMALLFSSAKRTKRWVE-PLGE-DMGVPQGTL-LVNQGWSRVTIPSTDLAMQMLTV-FYVAP 516
+P P P++ A +AL LLH F FL+ R Q R L L+LV R++ LA + +W+PV L P L+ P ++ D R YL+++G CL R G +G +LSF++ D DG R+ S++GPIR G T++++ G RR V P FSAASRD +S+E+ F G ++ + ++RVT DERTG+MALL+S+ K E PL + +P+G++ WS + P+ D +T+ F+V P
Sbjct: 155 AFLPSAPLPSLSARLSALSSPDLLHMIFPFLLHRARPQEARAVLTTLSLVNRRFHALACWEEYWRPVAEGLLPVLAVPRRHSPRRQEEEKAARGAGEGGGRRGED--------------------FRGYLLKYGHCLLHRRAWMGEALEDGFSLSFEVWDAMDGLRMLSASGPIRVQMDQQGGFTSLRMGGTHRREVPGPAFSAASRDPLRRRFASMEDYFGRGHLPEFGAALSVRVTVTDERTGRMALLWSTRKDAAYLTEAPLAYWEPFLPEGSISCFLDHWSPLMCPAYDGESMTVTIGFHVCP 441 The following BLAST results are available for this feature:
BLAST of EWM30397.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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