rna3058, rna3058 (mRNA) Nannochloropsis gaditana

Overview
Namerna3058
Unique Namerna3058
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length465
Alignment locationCM002460.1:589327..590394 -

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Properties
Property NameValue
Productprotein creg1
Orig transcript idgnl|cribi|Naga_100256g4.1477.mrna
Orig protein idgnl|cribi|Naga_100256g4.1477
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:589327..590394 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100256g4gene2936Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3058rna3058-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27625.1cds3050Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3058 ID=rna3058|Name=rna3058|organism=Nannochloropsis gaditana|type=mRNA|length=465bp
ATGCGACCCTCATATCGGCAACGGCGCTTTGTGCCTCATTTAAAGATGCC
TGCGTTTCATGGACGCGCTTCTCGGCGGCTGCCAGACATTGCCGCTGAAG
GGATCTGCAAGTTGCGAGCCTTCATTCGGCCGGACATAAGTGAGGACTTG
CCTTGCTCGATCGGCAAATTTGAGTGTAGAGATGCTCTCATCGGCGCATT
CAGCGGTGGGGCTAAGGGTGGCGATGATGTAGGTTTTCGTATTCCCACCA
AGGCTATCCTGGATGAGCCGCGTAAGCTTGGATTCACGGTACGGAATGTG
CGTCGGAAATGTTGCAGAGTGGCTCGTGGATCGGCACAGCGCTGCAATGC
ACCGTCCCAAGGCGAACAAGCTAGAATTAATATTAGCCAATTCTTGGGCA
TGCTGGTCCGCAATATCCTGTCGAGTGTCCCATTTTTCGGAGCCAGCCAA
ATCAATCAAGTTTAA
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protein sequence of rna3058

>rna3058-protein ID=rna3058-protein|Name=rna3058|organism=Nannochloropsis gaditana|type=polypeptide|length=266bp
MRTLLFFLQVSLLWPSVNSDGPLFGRHPRPVPPQPAKSGRWLLHESTWGV
LSTVSTLPGIAGAPFGNPQSLVDGPYRDGLFGDNSTGIPYFFVSELDVSQ
QDASANSLVSLTVSEAGVSSECAMLDPESPLCIRLTVTGDLVEVVDEEET
AFAMQALFQRHPQMQTWPTDHGWKVKKIVPRHIFVLDMFGGVKPVSVDEY
LEKCGALYRAESRTRCEWMGVSMRKFFVAQINMWLGRQGLAKRNQHVDLS
FYPSLFEENLYMSGSY
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mRNA from alignment at CM002460.1:589327..590394-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3058 ID=rna3058|Name=rna3058|organism=Nannochloropsis gaditana|type=mRNA|length=1068bp|location=Sequence derived from alignment at CM002460.1:589327..590394- (Nannochloropsis gaditana)
ATGCGAACACTGCTTTTCTTCCTGCAAGTTTCACTTCTTTGGCCGTCTGT
TAACTCGGACGGCCCCCTCTTTGGCCGGCATCCTCGCCCTGTGCCCCCCC
AGCCCGCGAAGTCGGGACGTTGGCTCTTGCACGAAAGCACATGGGGTGTC
TTATCCACCGTCTCGACTCTTCCTGGCATCGCAGGAGCACCATTTGGCAA
CCCACAGTCGTTGGTGGATGGCCCGTACCGCGATGGCTTATTCGGGGACA
ATTCAACGGGGATCCCGTATTTCTTCGTGTCAGAATTAGACGTCTCGCAG
CAAGATGCTTCTGCCAACTCCCTGGTGTCTCTGACAGTATCGGAAGCTGG
AGTTTCAAGCGAGTGTGCGATGCTAGATCCCGAAAGTCCCTTGTGCATTC
GCTTAACCGTGACCGGCGACTTGGTCGAAGTAGTGGACGAGGAAGAGACA
GCGTTTGCGATGCAGGCTTTATTCCAACGGCATCCCCAAATGCAAAGTGC
GTCCGGTGGGATGGTGGGAGGAAAGAGTCATGTTTTAAAAGCTTGTCACC
TTTACTCGGCGGGCCTGTTCTGTCTCGCCTGTACTGGGTCCGGTAGATGC
TCATGATGGATGATCGGTATTAATTTTCGACCCTTTTCCATACATCACGC
ACACCCCTCAGCATGGCCTACGGACCACGGCTGGAAGGTGAAGAAGATTG
TCCCTCGGCATATTTTTGTGCTGGACATGTTTGGTGGGGTCAAGCCCGTT
AGCGTGGACGAGTACTTGGAAGTTGAGCTTTAGAGTACTGGTGAGGTCAT
TTGCGCACTGGAGAAATGTGGAGCACTCTACCGCGCAGAATCCCGCACTA
GATGTGAATGGATGGGGGTTAGCATGAGAAAATTCTTGTAGATAAGGCAT
GAGCTTTGGGCAAGTCCACGTGTGTCTTTTCAACGATGATTTACAAGTGT
CGCTCAGATAAACATGTGGTTGGGAAGGCAAGGCCTCGCGAAGAGAAATC
AACACGTAGACCTGAGCTTCTATCCAAGTCTCTTTGAAGAAAACTTGTAT
ATGTCTGGCTCGTATTGA
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Coding sequence (CDS) from alignment at CM002460.1:589327..590394-

>rna3058 ID=rna3058|Name=rna3058|organism=Nannochloropsis gaditana|type=CDS|length=3204bp|location=Sequence derived from alignment at CM002460.1:589327..590394- (Nannochloropsis gaditana)
TGTCGCTCAGATAAACATGTGGTTGGGAAGGCAAGGCCTCGCGAAGAGAA
ATCAACACGTAGACCTGAGCTTCTATCCAAGTCTCTTTGAAGAAAACTTG
TATATGTCTGGCTCGTATTGAAAATGTGGAGCACTCTACCGCGCAGAATC
CCGCACTAGATGTGAATGGATGGGGGTTAGCATGAGAAAATTCTTCATGG
CCTACGGACCACGGCTGGAAGGTGAAGAAGATTGTCCCTCGGCATATTTT
TGTGCTGGACATGTTTGGTGGGGTCAAGCCCGTTAGCGTGGACGAGTACT
TGGAAATGCGAACACTGCTTTTCTTCCTGCAAGTTTCACTTCTTTGGCCG
TCTGTTAACTCGGACGGCCCCCTCTTTGGCCGGCATCCTCGCCCTGTGCC
CCCCCAGCCCGCGAAGTCGGGACGTTGGCTCTTGCACGAAAGCACATGGG
GTGTCTTATCCACCGTCTCGACTCTTCCTGGCATCGCAGGAGCACCATTT
GGCAACCCACAGTCGTTGGTGGATGGCCCGTACCGCGATGGCTTATTCGG
GGACAATTCAACGGGGATCCCGTATTTCTTCGTGTCAGAATTAGACGTCT
CGCAGCAAGATGCTTCTGCCAACTCCCTGGTGTCTCTGACAGTATCGGAA
GCTGGAGTTTCAAGCGAGTGTGCGATGCTAGATCCCGAAAGTCCCTTGTG
CATTCGCTTAACCGTGACCGGCGACTTGGTCGAAGTAGTGGACGAGGAAG
AGACAGCGTTTGCGATGCAGGCTTTATTCCAACGGCATCCCCAAATGCAA
ATGTCGCTCAGATAAACATGTGGTTGGGAAGGCAAGGCCTCGCGAAGAGA
AATCAACACGTAGACCTGAGCTTCTATCCAAGTCTCTTTGAAGAAAACTT
GTATATGTCTGGCTCGTATTGAAAATGTGGAGCACTCTACCGCGCAGAAT
CCCGCACTAGATGTGAATGGATGGGGGTTAGCATGAGAAAATTCTTCATG
GCCTACGGACCACGGCTGGAAGGTGAAGAAGATTGTCCCTCGGCATATTT
TTGTGCTGGACATGTTTGGTGGGGTCAAGCCCGTTAGCGTGGACGAGTAC
TTGGAAATGCGAACACTGCTTTTCTTCCTGCAAGTTTCACTTCTTTGGCC
GTCTGTTAACTCGGACGGCCCCCTCTTTGGCCGGCATCCTCGCCCTGTGC
CCCCCCAGCCCGCGAAGTCGGGACGTTGGCTCTTGCACGAAAGCACATGG
GGTGTCTTATCCACCGTCTCGACTCTTCCTGGCATCGCAGGAGCACCATT
TGGCAACCCACAGTCGTTGGTGGATGGCCCGTACCGCGATGGCTTATTCG
GGGACAATTCAACGGGGATCCCGTATTTCTTCGTGTCAGAATTAGACGTC
TCGCAGCAAGATGCTTCTGCCAACTCCCTGGTGTCTCTGACAGTATCGGA
AGCTGGAGTTTCAAGCGAGTGTGCGATGCTAGATCCCGAAAGTCCCTTGT
GCATTCGCTTAACCGTGACCGGCGACTTGGTCGAAGTAGTGGACGAGGAA
GAGACAGCGTTTGCGATGCAGGCTTTATTCCAACGGCATCCCCAAATGCA
AATGTCGCTCAGATAAACATGTGGTTGGGAAGGCAAGGCCTCGCGAAGAG
AAATCAACACGTAGACCTGAGCTTCTATCCAAGTCTCTTTGAAGAAAACT
TGTATATGTCTGGCTCGTATTGAAAATGTGGAGCACTCTACCGCGCAGAA
TCCCGCACTAGATGTGAATGGATGGGGGTTAGCATGAGAAAATTCTTCAT
GGCCTACGGACCACGGCTGGAAGGTGAAGAAGATTGTCCCTCGGCATATT
TTTGTGCTGGACATGTTTGGTGGGGTCAAGCCCGTTAGCGTGGACGAGTA
CTTGGAAATGCGAACACTGCTTTTCTTCCTGCAAGTTTCACTTCTTTGGC
CGTCTGTTAACTCGGACGGCCCCCTCTTTGGCCGGCATCCTCGCCCTGTG
CCCCCCCAGCCCGCGAAGTCGGGACGTTGGCTCTTGCACGAAAGCACATG
GGGTGTCTTATCCACCGTCTCGACTCTTCCTGGCATCGCAGGAGCACCAT
TTGGCAACCCACAGTCGTTGGTGGATGGCCCGTACCGCGATGGCTTATTC
GGGGACAATTCAACGGGGATCCCGTATTTCTTCGTGTCAGAATTAGACGT
CTCGCAGCAAGATGCTTCTGCCAACTCCCTGGTGTCTCTGACAGTATCGG
AAGCTGGAGTTTCAAGCGAGTGTGCGATGCTAGATCCCGAAAGTCCCTTG
TGCATTCGCTTAACCGTGACCGGCGACTTGGTCGAAGTAGTGGACGAGGA
AGAGACAGCGTTTGCGATGCAGGCTTTATTCCAACGGCATCCCCAAATGC
AAATGTCGCTCAGATAAACATGTGGTTGGGAAGGCAAGGCCTCGCGAAGA
GAAATCAACACGTAGACCTGAGCTTCTATCCAAGTCTCTTTGAAGAAAAC
TTGTATATGTCTGGCTCGTATTGAAAATGTGGAGCACTCTACCGCGCAGA
ATCCCGCACTAGATGTGAATGGATGGGGGTTAGCATGAGAAAATTCTTCA
TGGCCTACGGACCACGGCTGGAAGGTGAAGAAGATTGTCCCTCGGCATAT
TTTTGTGCTGGACATGTTTGGTGGGGTCAAGCCCGTTAGCGTGGACGAGT
ACTTGGAAATGCGAACACTGCTTTTCTTCCTGCAAGTTTCACTTCTTTGG
CCGTCTGTTAACTCGGACGGCCCCCTCTTTGGCCGGCATCCTCGCCCTGT
GCCCCCCCAGCCCGCGAAGTCGGGACGTTGGCTCTTGCACGAAAGCACAT
GGGGTGTCTTATCCACCGTCTCGACTCTTCCTGGCATCGCAGGAGCACCA
TTTGGCAACCCACAGTCGTTGGTGGATGGCCCGTACCGCGATGGCTTATT
CGGGGACAATTCAACGGGGATCCCGTATTTCTTCGTGTCAGAATTAGACG
TCTCGCAGCAAGATGCTTCTGCCAACTCCCTGGTGTCTCTGACAGTATCG
GAAGCTGGAGTTTCAAGCGAGTGTGCGATGCTAGATCCCGAAAGTCCCTT
GTGCATTCGCTTAACCGTGACCGGCGACTTGGTCGAAGTAGTGGACGAGG
AAGAGACAGCGTTTGCGATGCAGGCTTTATTCCAACGGCATCCCCAAATG
CAAA
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Synonyms
Publications