EWM27625.1, cds3050 (CDS) Nannochloropsis gaditana

Overview
NameEWM27625.1
Unique Namecds3050
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:589899..590394 -
Alignment locationCM002460.1:589624..589733 -
Alignment locationCM002460.1:589508..589581 -
Alignment locationCM002460.1:589327..589447 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27625.1
Productprotein creg1
Orig transcript idgnl|cribi|Naga_100256g4.1477.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:589899..590394 -
CM002460.1supercontigCM002460.1:589624..589733 -
CM002460.1supercontigCM002460.1:589508..589581 -
CM002460.1supercontigCM002460.1:589327..589447 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
GO:0010181FMN binding
GO:0016491oxidoreductase activity
Vocabulary: INTERPRO
TermDefinition
IPR012349Split_barrel_FMN-bd
Homology
BLAST of EWM27625.1 vs. NCBI_GenBank
Match: gi|585109894|gb|EWM27625.1| (protein creg1 [Nannochloropsis gaditana])

HSP 1 Score: 551.206 bits (1419), Expect = 0.000e+0
Identity = 266/266 (100.00%), Postives = 266/266 (100.00%), Query Frame = 0
Query:    1 MRTLLFFLQVSLLWPSVNSDGPLFGRHPRPVPPQPAKSGRWLLHESTWGVLSTVSTLPGIAGAPFGNPQSLVDGPYRDGLFGDNSTGIPYFFVSELDVSQQDASANSLVSLTVSEAGVSSECAMLDPESPLCIRLTVTGDLVEVVDEEETAFAMQALFQRHPQMQTWPTDHGWKVKKIVPRHIFVLDMFGGVKPVSVDEYLEKCGALYRAESRTRCEWMGVSMRKFFVAQINMWLGRQGLAKRNQHVDLSFYPSLFEENLYMSGSY 266
            MRTLLFFLQVSLLWPSVNSDGPLFGRHPRPVPPQPAKSGRWLLHESTWGVLSTVSTLPGIAGAPFGNPQSLVDGPYRDGLFGDNSTGIPYFFVSELDVSQQDASANSLVSLTVSEAGVSSECAMLDPESPLCIRLTVTGDLVEVVDEEETAFAMQALFQRHPQMQTWPTDHGWKVKKIVPRHIFVLDMFGGVKPVSVDEYLEKCGALYRAESRTRCEWMGVSMRKFFVAQINMWLGRQGLAKRNQHVDLSFYPSLFEENLYMSGSY
Sbjct:    1 MRTLLFFLQVSLLWPSVNSDGPLFGRHPRPVPPQPAKSGRWLLHESTWGVLSTVSTLPGIAGAPFGNPQSLVDGPYRDGLFGDNSTGIPYFFVSELDVSQQDASANSLVSLTVSEAGVSSECAMLDPESPLCIRLTVTGDLVEVVDEEETAFAMQALFQRHPQMQTWPTDHGWKVKKIVPRHIFVLDMFGGVKPVSVDEYLEKCGALYRAESRTRCEWMGVSMRKFFVAQINMWLGRQGLAKRNQHVDLSFYPSLFEENLYMSGSY 266          
BLAST of EWM27625.1 vs. NCBI_GenBank
Match: gi|1012195079|ref|XP_015971621.1| (protein CREG1 isoform X2 [Arachis duranensis] >gi|1193776989|ref|XP_020980910.1| protein CREG1 isoform X2 [Arachis duranensis])

HSP 1 Score: 147.517 bits (371), Expect = 2.446e-40
Identity = 78/181 (43.09%), Postives = 111/181 (61.33%), Query Frame = 0
Query:   21 GPLFGRHPRPVPPQPAKSGRWLLHESTWGVLSTVSTLPGIAGAPFGNPQSLVDGPYRDGLFGDNSTGIPYFFVSELDVSQQDASANSLVSLTVSEAGVSSECAMLDPESPLCIRLTVTGDLVEVVDEEETAFAMQALFQRHPQMQTWPTDHGWKVKKIVPRHIFVLDMFGGVKPVSVDEYL 201
            G       +P P   A S RWLL  ++WGVL+T+ST   + GAPFGN  S  DGP  +G      +GIPYF+++ LD + ++A  +   S TVSE  + + C  LDPE+P C ++T+TG L  V D +E  FA  +LF +H +M+ WP  H ++V K+    IF++D +GG KP+SVDEYL
Sbjct:   28 GQFLSIQTKPDPDDSAASARWLLSLNSWGVLNTIST--DLDGAPFGNVVSFSDGPPNEG------SGIPYFYLTTLDPTARNALKDERASFTVSEYPLGT-CGNLDPENPACSKITLTGKLKLVDDSKEAEFARISLFSKHSEMKGWPEGHNFQVFKLEIEDIFLIDWYGGPKPLSVDEYL 199          
BLAST of EWM27625.1 vs. NCBI_GenBank
Match: gi|1021531272|ref|XP_016162590.1| (protein CREG1 isoform X2 [Arachis ipaensis])

HSP 1 Score: 147.517 bits (371), Expect = 2.637e-40
Identity = 78/181 (43.09%), Postives = 111/181 (61.33%), Query Frame = 0
Query:   21 GPLFGRHPRPVPPQPAKSGRWLLHESTWGVLSTVSTLPGIAGAPFGNPQSLVDGPYRDGLFGDNSTGIPYFFVSELDVSQQDASANSLVSLTVSEAGVSSECAMLDPESPLCIRLTVTGDLVEVVDEEETAFAMQALFQRHPQMQTWPTDHGWKVKKIVPRHIFVLDMFGGVKPVSVDEYL 201
            G       +P P   A S RWLL  ++WGVL+T+ST   + GAPFGN  S  DGP  +G      +GIPYF+++ LD + ++A  +   S TVSE  + + C  LDPE+P C ++T+TG L  V D +E  FA  +LF +H +M+ WP  H ++V K+    IF++D +GG KP+SVDEYL
Sbjct:   28 GQFLSIQTKPDPDDSAASARWLLSLNSWGVLNTIST--DLDGAPFGNVVSFSDGPPNEG------SGIPYFYLTTLDPTARNALKDERASFTVSEYPLGT-CGNLDPENPACSKITLTGKLKLVDDSKEAEFARISLFSKHSEMKGWPEGHNFQVFKLEIEDIFLIDWYGGPKPLSVDEYL 199          
BLAST of EWM27625.1 vs. NCBI_GenBank
Match: gi|1012195075|ref|XP_015971620.1| (protein CREG1 isoform X1 [Arachis duranensis])

HSP 1 Score: 147.517 bits (371), Expect = 3.261e-40
Identity = 78/183 (42.62%), Postives = 112/183 (61.20%), Query Frame = 0
Query:   19 SDGPLFGRHPRPVPPQPAKSGRWLLHESTWGVLSTVSTLPGIAGAPFGNPQSLVDGPYRDGLFGDNSTGIPYFFVSELDVSQQDASANSLVSLTVSEAGVSSECAMLDPESPLCIRLTVTGDLVEVVDEEETAFAMQALFQRHPQMQTWPTDHGWKVKKIVPRHIFVLDMFGGVKPVSVDEYL 201
            + G       +P P   A S RWLL  ++WGVL+T+ST   + GAPFGN  S  DGP  +G      +GIPYF+++ LD + ++A  +   S TVSE  + + C  LDPE+P C ++T+TG L  V D +E  FA  +LF +H +M+ WP  H ++V K+    IF++D +GG KP+SVDEYL
Sbjct:   26 AQGQFLSIQTKPDPDDSAASARWLLSLNSWGVLNTIST--DLDGAPFGNVVSFSDGPPNEG------SGIPYFYLTTLDPTARNALKDERASFTVSEYPLGT-CGNLDPENPACSKITLTGKLKLVDDSKEAEFARISLFSKHSEMKGWPEGHNFQVFKLEIEDIFLIDWYGGPKPLSVDEYL 199          
BLAST of EWM27625.1 vs. NCBI_GenBank
Match: gi|1021531270|ref|XP_016162589.1| (protein CREG1 isoform X1 [Arachis ipaensis])

HSP 1 Score: 147.517 bits (371), Expect = 3.442e-40
Identity = 78/183 (42.62%), Postives = 112/183 (61.20%), Query Frame = 0
Query:   19 SDGPLFGRHPRPVPPQPAKSGRWLLHESTWGVLSTVSTLPGIAGAPFGNPQSLVDGPYRDGLFGDNSTGIPYFFVSELDVSQQDASANSLVSLTVSEAGVSSECAMLDPESPLCIRLTVTGDLVEVVDEEETAFAMQALFQRHPQMQTWPTDHGWKVKKIVPRHIFVLDMFGGVKPVSVDEYL 201
            + G       +P P   A S RWLL  ++WGVL+T+ST   + GAPFGN  S  DGP  +G      +GIPYF+++ LD + ++A  +   S TVSE  + + C  LDPE+P C ++T+TG L  V D +E  FA  +LF +H +M+ WP  H ++V K+    IF++D +GG KP+SVDEYL
Sbjct:   26 AQGQFLSIQTKPDPDDSAASARWLLSLNSWGVLNTIST--DLDGAPFGNVVSFSDGPPNEG------SGIPYFYLTTLDPTARNALKDERASFTVSEYPLGT-CGNLDPENPACSKITLTGKLKLVDDSKEAEFARISLFSKHSEMKGWPEGHNFQVFKLEIEDIFLIDWYGGPKPLSVDEYL 199          
BLAST of EWM27625.1 vs. NCBI_GenBank
Match: gi|168033327|ref|XP_001769167.1| (predicted protein [Physcomitrella patens] >gi|162679593|gb|EDQ66039.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 145.976 bits (367), Expect = 6.617e-40
Identity = 73/172 (42.44%), Postives = 108/172 (62.79%), Query Frame = 0
Query:   29 RPVPPQPAKSGRWLLHESTWGVLSTVSTLPGIAGAPFGNPQSLVDGPYRDGLFGDNSTGIPYFFVSELDVSQQDASANSLVSLTVSEAGVSSECAMLDPESPLCIRLTVTGDLVEVVDEEETAFAMQALFQRHPQMQTWPTDHGWKVKKIVPRHIFVLDMFGGVKPVSVDEY 200
            RP P     + RWL+ +S WGVLST+S    + GAP+GN  +  DGP        +S G P+F++S +D +  D + +S  SLT+SEA + + C  +DPE+P C RLT++G ++E+ D++E  FA  ALF +HP+M  WP  H W   K+   +I++LD +GG KPV+V EY
Sbjct:   15 RPDPSDAPATARWLVAQSAWGVLSTISI--HLEGAPWGNVAAFSDGPV------GSSGGTPFFYLSRMDPTPNDITLDSRCSLTLSEASLGT-CGSVDPENPTCARLTLSGKMMEITDQQELDFAALALFSKHPEMPDWPKWHKWIFYKLDILNIYLLDNYGGAKPVTVSEY 177          
BLAST of EWM27625.1 vs. NCBI_GenBank
Match: gi|291243772|ref|XP_002741774.1| (PREDICTED: protein CREG1-like [Saccoglossus kowalevskii])

HSP 1 Score: 147.902 bits (372), Expect = 8.860e-40
Identity = 74/179 (41.34%), Postives = 108/179 (60.34%), Query Frame = 0
Query:   29 RPVPPQPAKSGRWLLHESTWGVLSTVSTLPGIAGAPFGNPQSLVDGPYRDGLFGDNSTGIPYFFVSELDVSQQDASANSLVSLTVSEAGVSS--ECAML---DPESPLCIRLTVTGDLVEVVDEEETAFAMQALFQRHPQMQTWPTDHGWKVKKIVPRHIFVLDMFGGVKPVSVDEYLE 202
            RP     A   R+++H + W V++T+ST P + G  F N  +L DG        DNSTG+PYF+VS LDVS QD   N+ V+++ SEA  +   +C +    DPESPLC RL + G +V V+++ E  FA +ALF RHP M TWP  H W+  K+  + ++++D FGG K + V++Y  
Sbjct:   79 RPPYKDIAARARYVVHRADWAVVNTISTQPRMTGLAFSNTNALADG------LPDNSTGVPYFYVSPLDVSIQDIVTNNSVTVSFSEAEFNDIEDCIITSGGDPESPLCTRLVLIGKMVSVIEQSERDFAKKALFTRHPLMPTWPESHNWEFMKLDIKDLWIIDFFGGGKHIPVEDYFN 251          
BLAST of EWM27625.1 vs. NCBI_GenBank
Match: gi|595943283|ref|XP_007215957.1| (protein CREG1 [Prunus persica] >gi|1139785585|gb|ONI19412.1| hypothetical protein PRUPE_3G278300 [Prunus persica])

HSP 1 Score: 146.362 bits (368), Expect = 9.945e-40
Identity = 78/201 (38.81%), Postives = 122/201 (60.70%), Query Frame = 0
Query:    6 FFLQVSLLWPSVNSDGPLFGRH---PRPVPPQPAKSGRWLLHESTWGVLSTVSTLPGIAGAPFGNPQSLVDGPYRDGLFGDNSTGIPYFFVSELDVSQQDASANSLVSLTVSEAGVSSECAMLDPESPLCIRLTVTGDL-VEVVDEEETAFAMQALFQRHPQMQTWPTDHGWKVKKIVPRHIFVLDMFGGVKPVSVDEYLE 202
            F   + L+   +   GP+ GR     +P P   A + RWL+ +++WGVL+T+S+   + GAPFGN  S  DG   +G       GIPYF+++ LD + ++A  +   SLT+SE  + + C   DPE+P C ++T+TG L +   D +ET FA  ALF +HP+M+ WP +H ++  K+   +IF++D FGG KP++VD+YL 
Sbjct:    9 FVYAICLVSVLLGIQGPVHGRLLSLKKPDPENAAATARWLVSQNSWGVLNTISS--ELGGAPFGNVVSFSDGEPGNG------RGIPYFYLTTLDPTARNALKDQRASLTISEYPIGT-CGKTDPENPTCAKITLTGKLKLADKDSKETEFAKNALFSKHPEMKDWPKNHNFEFFKLDIENIFLIDWFGGPKPLTVDQYLH 200          
BLAST of EWM27625.1 vs. NCBI_GenBank
Match: gi|645249267|ref|XP_008230672.1| (PREDICTED: protein CREG1 [Prunus mume])

HSP 1 Score: 145.976 bits (367), Expect = 1.373e-39
Identity = 76/186 (40.86%), Postives = 116/186 (62.37%), Query Frame = 0
Query:   21 GPLFGRH---PRPVPPQPAKSGRWLLHESTWGVLSTVSTLPGIAGAPFGNPQSLVDGPYRDGLFGDNSTGIPYFFVSELDVSQQDASANSLVSLTVSEAGVSSECAMLDPESPLCIRLTVTGDL-VEVVDEEETAFAMQALFQRHPQMQTWPTDHGWKVKKIVPRHIFVLDMFGGVKPVSVDEYLE 202
            GP+ GR     +P P   A + RWL+ +++WGVL+T+S+   + GAPFGN  S  DG    G       GIPYF+++ LD + ++A  +   SLT+SE  + + C   DPE+P C ++T+TG L +   D +ET FA  ALF +HP+M+ WP +H ++  K+   +IF++D FGG KP++VD+YL 
Sbjct:   24 GPVHGRLLSLKKPDPENAAATARWLVSQNSWGVLNTISS--ELGGAPFGNVVSFSDGEPGKG------RGIPYFYLTTLDPTARNARKDQRASLTISEHPIGT-CGKTDPENPTCAKITLTGKLKLADKDSKETEFAKNALFSKHPEMKDWPKNHNFEFFKLDIENIFLIDWFGGPKPLTVDQYLH 200          
BLAST of EWM27625.1 vs. NCBI_GenBank
Match: gi|1111085649|ref|XP_019225277.1| (PREDICTED: protein CREG1 isoform X1 [Nicotiana attenuata] >gi|1102149635|gb|OIT05911.1| hypothetical protein A4A49_40263 [Nicotiana attenuata])

HSP 1 Score: 145.591 bits (366), Expect = 1.729e-39
Identity = 85/212 (40.09%), Postives = 127/212 (59.91%), Query Frame = 0
Query:    4 LLFFLQVSLLWPSVNSDGPLFGRHPRPVPPQPAKSGRWLLHESTWGVLSTVSTLPGIAGAPFGNPQSLVDGPYRDGLFGDNSTGIPYFFVSELDVSQQDASANSLVSLTVSEAGVSSECAMLDPESPLCIRLTVTGDLVEVV-DEEETAFAMQALFQRHPQMQTWPTDHGWKVKKIVPRHIFVLDMFGGVKPVSVDEYLEKCGALYRAESRT 214
            L+FFL +S  +  VN   PL     RP P   A   RWL+ +S+WGVL+T+++   + GAPFGN  S  DG        D   GIPYF+++ LD + ++A  +   SLT+SE  + S C   DPE+P C ++T+ G L  +  D +ET+FA  ALF +HP+M+ WP  H +++ KI    IF+++ FGG KP++VD+YL+      + +SRT
Sbjct:   13 LVFFLALSQEF--VNGR-PLILSLTRPKPDDAALFARWLVSQSSWGVLNTIAS--DMGGAPFGNVVSFSDG------LPDKGRGIPYFYLTTLDPTARNALKDQRSSLTISEYAIGS-CGKTDPENPSCAKITLIGKLKLLNGDPKETSFAQTALFTKHPEMKGWPKGHNFQIFKIEIEEIFMINWFGGPKPLTVDQYLQA-----KMDSRT 207          
The following BLAST results are available for this feature:
BLAST of EWM27625.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109894|gb|EWM27625.1|0.000e+0100.00protein creg1 [Nannochloropsis gaditana][more]
gi|1012195079|ref|XP_015971621.1|2.446e-4043.09protein CREG1 isoform X2 [Arachis duranensis] >gi|... [more]
gi|1021531272|ref|XP_016162590.1|2.637e-4043.09protein CREG1 isoform X2 [Arachis ipaensis][more]
gi|1012195075|ref|XP_015971620.1|3.261e-4042.62protein CREG1 isoform X1 [Arachis duranensis][more]
gi|1021531270|ref|XP_016162589.1|3.442e-4042.62protein CREG1 isoform X1 [Arachis ipaensis][more]
gi|168033327|ref|XP_001769167.1|6.617e-4042.44predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|291243772|ref|XP_002741774.1|8.860e-4041.34PREDICTED: protein CREG1-like [Saccoglossus kowale... [more]
gi|595943283|ref|XP_007215957.1|9.945e-4038.81protein CREG1 [Prunus persica] >gi|1139785585|gb|O... [more]
gi|645249267|ref|XP_008230672.1|1.373e-3940.86PREDICTED: protein CREG1 [Prunus mume][more]
gi|1111085649|ref|XP_019225277.1|1.729e-3940.09PREDICTED: protein CREG1 isoform X1 [Nicotiana att... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3058rna3058Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications