rna3057, rna3057 (mRNA) Nannochloropsis gaditana

Overview
Namerna3057
Unique Namerna3057
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1311
Alignment locationCM002460.1:587597..588245 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100256g5.1476.mrna
Orig protein idgnl|cribi|Naga_100256g5.1476
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:587597..588245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100256g5gene2935Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3057rna3057-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27624.1cds3049Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3057 ID=rna3057|Name=rna3057|organism=Nannochloropsis gaditana|type=mRNA|length=1311bp
CCCTGTGGGATGCAATACGATAGCGCCGACGGTCATCTCATTCGCTCACT
TGGAAACCTCACAATCCTCCATACAATGAACAAGTCTACCTGCGTTTCCA
GCGGTCTTTTTGACAGGAATGCCTCCGACACGGAAAGAAGAAGTGGAAAT
GGATTTGAGTGAACTTGAGGCGGTGACGCAGCGCCTCCTTCAGCAGTCGT
TGAACTATAACGAGGAGGAGGCTGCCATCATCACTAGGGTGCTCCTATAC
GCCCAAATGCGGGGCAATAGCCAGGGTGTGATCAAGCTCGTGACCGGAGG
TGTCCCTGCTTCCGACGCCTCCACACACACCGATATCGAGGTTGAGCACG
AGACGAAGGTATCCGCCCGCCTGCACGGACATGGCACTGCTGGAATGCTT
GTCCTCCATCGTGCGACTTCGATGGCTATCCAGAAAGCTAGAGAGCATGG
GTTGAGCATTGTCGCCACCCATGGAACGTCGTCCGGTACGGGTGCCATTG
GATTCTATGCCCGCAGTGTCGCAGACAATGGTCTTGTGGGCATCATTCTC
TCGCAGAGTCCTGAGCTCATGGCGCCGCATGGATCGTACGAGCCGATCTT
CGGCACGAACCCTTTCGCTTTTGGCATCCCACGTGACGATACCTCAATTC
CGATAGTACTCGATATGGCTACCTCGGCGTATGCGTGGTACGCTCTAAAG
GAGGCTCGAGCTGCCGGGCAACCTATCCCCCCGGACGTGGCCTACGATGC
CGAGGGCCATCCTACCCGGGACCCGAGTGCAGCTCTCTCAGGAGCATTGC
GGGTTTTTGATCGCTCGCACAAGGGAAGTCACATCGCCCTGATGGTGGAG
CTTTTGGCGGGGGGGCTGACGGGAGCGGACGTGGAGGAGAAATGGCAGCG
AGAAAACTGGGGCAACCTGGTTGTGGCCATCGACCCCGAGGTCCTCGGGC
AGGGACTGGCTCAGTTTACAGCCAAGGTGGAGGCAGTGGTCAGACGAGTG
GAAGGTGCCAAGCCCTTGCCGGGGGCGACGGCGCAGGAACGGGGAGATGG
GAGCGCCCAGCTTAGGAGCGGCGGAGACGTCCGAGGTCCCTCCTTGCCGG
GCTCGCGCAGTGAGGCTGAGGCGGCGACAGTCGCAGAAAGGGGAAGGATC
AGATTAGAACGTAGTGTTTACGAGAATTTAATGAAAGAGGTCGCTTCTAT
TTAGGTGCCTGCGCGTGTGACACACACTAGGAAGCTGGCAACGAAAATGT
CTTTTGAGAATATCCTTTAAATTGCAACGAAATCTGGCGCGAAGCCATGT
CGATAAAACCC
back to top

protein sequence of rna3057

>rna3057-protein ID=rna3057-protein|Name=rna3057|organism=Nannochloropsis gaditana|type=polypeptide|length=154bp
MRPSYRQRRFVPHLKMPAFHGRASRRLPDIAAEGICKLRAFIRPDISEDL
PCSIGKFECRDALIGAFSGGAKGGDDVGFRIPTKAILDEPRKLGFTVRNV
RRKCCRVARGSAQRCNAPSQGEQARINISQFLGMLVRNILSSVPFFGASQ
INQV
back to top

mRNA from alignment at CM002460.1:587597..588245-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3057 ID=rna3057|Name=rna3057|organism=Nannochloropsis gaditana|type=mRNA|length=649bp|location=Sequence derived from alignment at CM002460.1:587597..588245- (Nannochloropsis gaditana)
ATGCGACCCTCATATCGGCAACGGCGCTTTGTGCCTCATTTAAAGATGCC
TGCGTTTCATGGACGCGCTTCTCGGCGGCTGCCAGACATTGCCGCTGTTC
CTCCCTCAACGCTTCGCATTCTTCTCGGAGTTGCCGCTCCGACGCCACCC
TTATCATCTCCTCATCCAGGCTGCCCGCTGACGCCGTTTTCGTCACGAGT
GAAGAGGCGGAAGAAGAGGACTTCAATCGTAAAACTAGAGCTCGCAACAG
TGAGATTTCTCTCTGCAACTGATCCACAAGGAAGGGATCTGCAAGTTGCG
AGCCTTCATTCGGCCGGACATAAGTGAGGACTTGCCTTGCTCGATCGGCA
AATTTGAGTGTAGAGATGCTCTCATCGGCGCATTCAGCGGTGGGGCTAAG
GGTGGCGATGATGTAGGTTTTCGTATTCCCACCAAGGCTATCCTGGATGA
GCCGCGTAAGCTTGGATTCACGGTACGGAATGTGCGTCGGAAATGTTGCA
GAGTGGCTCGTGGATCGGCACAGCGCTGCAATGCACCGTCCCAAGGCGAA
CAAGCTAGAATTAATATTAGCCAATTCTTGGGCATGCTGGTCCGCAATAT
CCTGTCGAGTGTCCCATTTTTCGGAGCCAGCCAAATCAATCAAGTTTAA
back to top

Coding sequence (CDS) from alignment at CM002460.1:587597..588245-

>rna3057 ID=rna3057|Name=rna3057|organism=Nannochloropsis gaditana|type=CDS|length=930bp|location=Sequence derived from alignment at CM002460.1:587597..588245- (Nannochloropsis gaditana)
GAAGGGATCTGCAAGTTGCGAGCCTTCATTCGGCCGGACATAAGTGAGGA
CTTGCCTTGCTCGATCGGCAAATTTGAGTGTAGAGATGCTCTCATCGGCG
CATTCAGCGGTGGGGCTAAGGGTGGCGATGATGTAGGTTTTCGTATTCCC
ACCAAGGCTATCCTGGATGAGCCGCGTAAGCTTGGATTCACGGTACGGAA
TGTGCGTCGGAAATGTTGCAGAGTGGCTCGTGGATCGGCACAGCGCTGCA
ATGCACCGTCCCAAGGCGAACAAGCTAGAATTAATATTAGCCAATTCTTG
GGCATGCTGGTCCGCAATATCCTGTCGAGTGTCCCATTTTTCGGAGCCAG
CCAAATCAATCAAGTTTAAATGCGACCCTCATATCGGCAACGGCGCTTTG
TGCCTCATTTAAAGATGCCTGCGTTTCATGGACGCGCTTCTCGGCGGCTG
CCAGACATTGCCGCTGAAGGGATCTGCAAGTTGCGAGCCTTCATTCGGCC
GGACATAAGTGAGGACTTGCCTTGCTCGATCGGCAAATTTGAGTGTAGAG
ATGCTCTCATCGGCGCATTCAGCGGTGGGGCTAAGGGTGGCGATGATGTA
GGTTTTCGTATTCCCACCAAGGCTATCCTGGATGAGCCGCGTAAGCTTGG
ATTCACGGTACGGAATGTGCGTCGGAAATGTTGCAGAGTGGCTCGTGGAT
CGGCACAGCGCTGCAATGCACCGTCCCAAGGCGAACAAGCTAGAATTAAT
ATTAGCCAATTCTTGGGCATGCTGGTCCGCAATATCCTGTCGAGTGTCCC
ATTTTTCGGAGCCAGCCAAATCAATCAAGTTTAAATGCGACCCTCATATC
GGCAACGGCGCTTTGTGCCTCATTTAAAGATGCCTGCGTTTCATGGACGC
GCTTCTCGGCGGCTGCCAGACATTGCCGCT
back to top
Synonyms
Publications