EWM27624.1, cds3049 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM27624.1
Unique Name	cds3049
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002460.1:588150..588245 -
Alignment location	CM002460.1:587597..587965 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM27624.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100256g5.1476.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:588150..588245 -
CM002460.1	supercontig	CM002460.1:587597..587965 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM27624.1 vs. NCBI_GenBank
Match: gi|585109893|gb|EWM27624.1| (hypothetical protein Naga_100256g5 [Nannochloropsis gaditana])

HSP 1 Score: 310.842 bits (795), Expect = 3.963e-107
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0

Query:    1 MRPSYRQRRFVPHLKMPAFHGRASRRLPDIAAEGICKLRAFIRPDISEDLPCSIGKFECRDALIGAFSGGAKGGDDVGFRIPTKAILDEPRKLGFTVRNVRRKCCRVARGSAQRCNAPSQGEQARINISQFLGMLVRNILSSVPFFGASQINQV 154
            MRPSYRQRRFVPHLKMPAFHGRASRRLPDIAAEGICKLRAFIRPDISEDLPCSIGKFECRDALIGAFSGGAKGGDDVGFRIPTKAILDEPRKLGFTVRNVRRKCCRVARGSAQRCNAPSQGEQARINISQFLGMLVRNILSSVPFFGASQINQV
Sbjct:    1 MRPSYRQRRFVPHLKMPAFHGRASRRLPDIAAEGICKLRAFIRPDISEDLPCSIGKFECRDALIGAFSGGAKGGDDVGFRIPTKAILDEPRKLGFTVRNVRRKCCRVARGSAQRCNAPSQGEQARINISQFLGMLVRNILSSVPFFGASQINQV 154

The following BLAST results are available for this feature:

BLAST of EWM27624.1 vs. NCBI_GenBank

BLAST of EWM27624.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585109893\|gb\|EWM27624.1\|	3.963e-107	100.00	hypothetical protein Naga_100256g5 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna3057	rna3057	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications