rna305, rna305 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna305
Unique Name	rna305
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2475
Alignment location	CM002455.1:756003..757826 -

Link to JBrowse

Properties


Property Name	Value
Product	pre-mrna-splicing factor
Orig transcript id	gnl\|cribi\|Naga_100026g10.10619.mrna
Orig protein id	gnl\|cribi\|Naga_100026g10.10619
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:756003..757826 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100026g10	gene294	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30365.1	cds305	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna305	rna305-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:756003..757826-
coding sequence from alignment at CM002455.1:756003..757826-

mRNA sequence

>rna305 ID=rna305|Name=rna305|organism=Nannochloropsis gaditana|type=mRNA|length=2475bp
ATGCACTTCTCAAAGATGCAAGGCCAACCAAACCTCACTCCAGTGGAGCA
GGAATTCGTCCGAGAAAGCCAGCGTCAAAAACATTACGCTAGCGAGCATA
TACCAGGCGTGATTGAGGTAGCAAATGTGGCAGCTTTGGGGAAGCTCGTT
TCGCTTCGCTTCCTGGAGTGGGTATCTGAGCACCCTGCAGGAGTTGTGTC
TCTCCCGACAGGTCGCACGCCCGAGATGTTCATAGCTTACCTCAAGCACT
TCCGTCAAAATTGGAAAGAGTCCAGTACCCAAGTAGAGCTAAAGCTATAT
GGTTTGGGCGGTCTGGCCTGCTTCCCTGACACGTCACAGCTCAAGTTCGT
TCAGCTTGACGAGTTCTTCCCAATGCACCCTGACCACAAGACCTCATTCA
CGCACTACGTCCGCAACCTCTACTTCCCTTTGCTAGATTTAAAACCTGAA
AATATATTGACGATGGATTTCGTCAGCGCTGGAGTCCTTCCAGACGACCA
CAATGCATGCGCCTCGATTTTCGAGAATGGCATTGTCAATGTCGATTTGT
TGAGACCCGCGATGGCCGATGAAGAAGTAGAGAAAAGAGACGAAGACAGG
AATGACCGATGGAATGCCGCCACAGATGACAAAGCGGTAAAGGACAAAAA
GTACGATGTTCAAGTCGCCATACTAGCCAAAGCCCATTCTTTCGCGAAGA
AATACGAAGCTCAGGTTCGGGCTTGGGGTGGGATTGGGTTTTGGGTGGGG
GGAATCGGGCCAGACGGCCACATAGCCTTCAATATGCCGGGATCATCACA
CAACAGTCAGACCAGGATCGTGACACTAAATTACCCTACTGCCGCAGCCG
CTTCCGGCGATCTAGGTGGCATTGAGTTCTCGCGCCACAAAGCCGCTCTT
ACTATCGGGCTGGACACCATCACTTTCAATAAGGATGCGGCCCTAATTGT
CATGGCCGCCGGAGAAGGCAAGGCCCGCGTGGTAGCTGAGGCCATTGAGA
GCCAGCCATCCACGGAGATCCCAGCCACGTGCCTACAATCCCATCCGGGT
GCGCGTTTCTATGTTTCCTCAGGGGCAGCAAGCCTTTTGAAGGAGCGTCG
CACCGAGACCCTACATCGAAAGATCATGGAGCGGTCGTTGCTGGACACAG
ATGTCGATTCAACTTTAGTAGACCTTGCCTTGCGGCTGAACAAGCGGCTC
GTAGATCTGAGCGAGGAGGACGTTGGGCAAGATTCCCGTGGCGCCTTGTT
CCTGAGGCCATCGACAAGGAAAGGACCGCACGCCTCGCTTCAGACTCTCG
TAGAAGGAACAGTCCGCCGCCTTGAAGGCAAAATTTCGCGCGGTACGGTT
CTGGCGCGAGGGCGGCGAATCCTACACACCGCCCCGCACCACGACGACAT
CATGCTCTCCTACCACGCGGCACTCCCCGACCTGATGGCCACCAACACTC
ACCGATTCGCCTACCTGACGTCCGGGTTCCACGCCGTGACCAACGGCTAC
ATGCTTTCCATACTCCGACCTCCGCACGAGGACGCCGCTTTCCTCCGTGA
GAGAGCCAGCCTCATCTTCGAGACTCCCTACCCTCGGGTCGTGGAGGCCT
TTGTGGCTGCACACCGGGAGCGGAGCACTTGCTTGGAGGCCGAGCTGGAA
TCCGTGCTGTGCCTTCGACAGATGTCTGCCATCTGGGAGGTGACAAAAGT
CGAGGCCCTGCAGCAAGAAGTCGCCGGAGTGGTCGCCTTCTTGACCCAGC
AGCTCCCGGGGGACAAGAGCCCCGTCAAAATTCAGCTTCTCAAGGGCGCT
ATGCGCGAGACCGAGGCTGACCGCATGTGGGCATTGCGAGGTGTTGATCC
CTCCCAGGTCAAACACCTCCGCTCCGCCTTCTACACTGACGACTTCTTTA
CCCCGCTACCAACCATTGAGGAGGACGCCATGCCGATGGTGAGGATGCTG
GAAGACTTCAAGCCGGACATCGTCACAGTCGCCTTCGACCCCGAGGGAAC
GGGGCCAGACACGCACTACAAAGTCCTTCAAGTAGTCGCACAGGCGACAC
GCATGTACGAAAGCGCGGATGAAATGGAATCGGTCGCGCGTAGCCCGTCG
GGCCTGACCGTCTGGGGGTATCGTAATGTCTGGTTTCGATTCCACATGGC
GGAGGCCACCGTGATGGCTCCTGTCAACGACGCAGGTCTAGCAGAGATGA
ATGACGCGTTTCTCACATGCTTCTCCACCCAGAAATCTGCCTCCTTTCCG
GCCCCGGACTACGACGGGCCGTTCTCGCATTGGTCCGAGGCGTCTCAGCG
GGCACAACGGCAGCAGCTAGGCGTGGTCTTGGGGGAGGACTTTTTTGTCA
CTCACCCCGACGCAAGTGTGCGGGCTTCCAGCGGATACGTCTTCCTGAAG
GAAATGGATCGCGACGCCTTTTCCAAGACGGCTACGCAACTCCGTGGGCG
CATGGAATCTGACAGGGGCATGTGA

protein sequence of rna305

>rna305-protein ID=rna305-protein|Name=rna305|organism=Nannochloropsis gaditana|type=polypeptide|length=544bp
MGRSLLPHPSSLMLSHPSSRLLSIMTTSLADMILGNRKRTCDLYTAEMTS
GTTPPFLPAQKLKVAVKVDQEYKIPCSSPTVHTSSTKQESEATSAPGNEE
TRHRGPSVLAGQGKAKGEATDTLNILNSLRNEEAERELRQYRGKYGGSRA
ASRGALVAYKGNDAGGAMVSRSNKRDGRTPPGAAAAAAAGIGNSSALALH
RTPAKVPTPTWHAPWKLHAVVAGHLGWVRAVAFDPANEWFVTGSADRTIK
VWDLAKCAAGAEGGLRLTLTGHISAVRALAVSNRHPYLFSVAEDKTVKCW
DLEQNKVIRHYHGHLSGVYSLALHPTLDVLVTGGRDSVARVWDMRTKMQV
HVLGGHTNTVGALATNSVDPQIITGSYDSTIKLWDIVAGKSMATLTNHKK
AVRDLKVHPKELSFVSGAQDNLKKWQVRDGKFLKNLSGHNAVINTLAINE
DNVLVSCGDNGSLRFWDYQTGYCFQRLETIVQPGSLDCEAGIYASAFDMS
GTRFLTCEADKTVKIWKEDAEASPETHPIDMEAWKQECLSHKRW

mRNA from alignment at CM002455.1:756003..757826-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna305 ID=rna305|Name=rna305|organism=Nannochloropsis gaditana|type=mRNA|length=1824bp|location=Sequence derived from alignment at CM002455.1:756003..757826- (Nannochloropsis gaditana)
CAAAGCATGTATGGGCTACATTGAGAACCATAGCATGCGCTTAAAGGGCG
CGGGAGCTGGCATGTCTGTGAACCATGTCTAGATGGGGCGAAGCCTCCTA
CCCCACCCGTCCTCTCTCATGCTCTCGCACCCCTCCTCCAGGCTCTTGAG
TATCATGACTACCTCTTTAGCGGACATGATTCTCGGTAACAGGAAGCGTA
CCTGCGACCTATACACAGCAGAAATGACGAGTGGAACAACCCCGCCATTC
CTCCCGGCGCAAAAACTGAAAGTGGCAGTCAAGGTCGATCAGGAGTACAA
AATTCCTTGCAGCTCGCCCACTGTACATACATCATCGACAAAGCAGGAAA
GCGAAGCCACATCTGCCCCAGGAAATGAAGAAACGCGGCACAGAGGTCCG
AGCGTGCTTGCTGGGCAAGGCAAAGCCAAGGGGGAAGCCACCGATACACT
AAATATCCTCAATTCTCTGCGAAACGAAGAAGCCGAGAGGGAGCTTCGAC
AATACAGAGGGAAATATGGCGGCTCGCGCGCAGCCAGCAGAGGCGCTTTG
GTGGCTTACAAAGGGAATGATGCAGGGGGAGCCATGGTAAGTAGGTCGAA
CAAGCGGGACGGGAGAACTCCCCCAGGCGCAGCGGCCGCAGCAGCCGCCG
GCATCGGCAACTCCTCGGCTCTGGCTTTGCACCGCACCCCCGCAAAGGTC
CCGACGCCTACATGGCACGCGCCGTGGAAGCTGCATGCGGTGGTGGCGGG
TCACTTGGGGTGGGTGCGGGCGGTGGCCTTCGACCCGGCGAACGAGTGGT
TCGTGACGGGCTCAGCGGATCGAACCATCAAAGTCTGGGATCTGGCCAAG
TGCGCGGCGGGGGCGGAGGGGGGCTTGCGCCTGACCTTAACGGGCCACAT
TTCGGCCGTGCGCGCCTTGGCGGTATCAAACAGACACCCCTATTTGTTCT
CCGTGGCCGAGGATAAGACCGTCAAGTGCTGGGACCTAGAGCAGAACAAA
GTCATCCGCCACTACCACGGCCACCTCTCAGGCGTCTACAGCCTGGCGCT
GCACCCGACACTCGATGTCCTTGTCACGGGCGGGCGGGACTCTGTGGCAC
GCGTGTGGGACATGCGCACCAAGATGCAGGTGCACGTGCTGGGCGGGCAC
ACCAACACAGTCGGGGCCCTCGCCACCAATTCCGTGGACCCGCAGATCAT
CACTGGCTCCTACGATTCCACGATCAAGCTCTGGGATATCGTTGCTGGCA
AGTCGATGGCTACCCTCACGAACCACAAAAAAGCTGTGCGCGACCTGAAG
GTGCACCCGAAGGAGCTCTCATTCGTCTCCGGTGCCCAAGACAACCTGAA
AAAATGGCAAGTCCGCGACGGGAAGTTCTTGAAGAACCTGAGTGGTCACA
ATGCCGTCATCAACACGCTGGCCATAAATGAGGACAATGTACTGGTCTCA
TGCGGGGATAATGGAAGCCTTCGTTTTTGGGACTACCAGACTGGATATTG
CTTTCAGAGGCTGGAGACGATTGTGCAACCGGGCTCCTTGGACTGCGAGG
CAGGGATCTATGCTTCGGCTTTCGATATGAGCGGGACCCGCTTTTTAACG
TGCGAGGCAGACAAGACGGTCAAAATCTGGAAAGAGGACGCGGAAGCAAG
CCCCGAGACTCACCCGATCGACATGGAGGCCTGGAAGCAAGAGTGCCTTT
CCCATAAGCGGTGGTAAAGGAAATAAAGATGGACAGACGGCATGCTAGTA
GACTTTGTTGAGATTAGTGTTTGTGTTCGTCTTTATGGCTTTGAGTGGGC
CCCCTTAACCTATACACACATGAC

Coding sequence (CDS) from alignment at CM002455.1:756003..757826-

>rna305 ID=rna305|Name=rna305|organism=Nannochloropsis gaditana|type=CDS|length=1635bp|location=Sequence derived from alignment at CM002455.1:756003..757826- (Nannochloropsis gaditana)
ATGGGGCGAAGCCTCCTACCCCACCCGTCCTCTCTCATGCTCTCGCACCC
CTCCTCCAGGCTCTTGAGTATCATGACTACCTCTTTAGCGGACATGATTC
TCGGTAACAGGAAGCGTACCTGCGACCTATACACAGCAGAAATGACGAGT
GGAACAACCCCGCCATTCCTCCCGGCGCAAAAACTGAAAGTGGCAGTCAA
GGTCGATCAGGAGTACAAAATTCCTTGCAGCTCGCCCACTGTACATACAT
CATCGACAAAGCAGGAAAGCGAAGCCACATCTGCCCCAGGAAATGAAGAA
ACGCGGCACAGAGGTCCGAGCGTGCTTGCTGGGCAAGGCAAAGCCAAGGG
GGAAGCCACCGATACACTAAATATCCTCAATTCTCTGCGAAACGAAGAAG
CCGAGAGGGAGCTTCGACAATACAGAGGGAAATATGGCGGCTCGCGCGCA
GCCAGCAGAGGCGCTTTGGTGGCTTACAAAGGGAATGATGCAGGGGGAGC
CATGGTAAGTAGGTCGAACAAGCGGGACGGGAGAACTCCCCCAGGCGCAG
CGGCCGCAGCAGCCGCCGGCATCGGCAACTCCTCGGCTCTGGCTTTGCAC
CGCACCCCCGCAAAGGTCCCGACGCCTACATGGCACGCGCCGTGGAAGCT
GCATGCGGTGGTGGCGGGTCACTTGGGGTGGGTGCGGGCGGTGGCCTTCG
ACCCGGCGAACGAGTGGTTCGTGACGGGCTCAGCGGATCGAACCATCAAA
GTCTGGGATCTGGCCAAGTGCGCGGCGGGGGCGGAGGGGGGCTTGCGCCT
GACCTTAACGGGCCACATTTCGGCCGTGCGCGCCTTGGCGGTATCAAACA
GACACCCCTATTTGTTCTCCGTGGCCGAGGATAAGACCGTCAAGTGCTGG
GACCTAGAGCAGAACAAAGTCATCCGCCACTACCACGGCCACCTCTCAGG
CGTCTACAGCCTGGCGCTGCACCCGACACTCGATGTCCTTGTCACGGGCG
GGCGGGACTCTGTGGCACGCGTGTGGGACATGCGCACCAAGATGCAGGTG
CACGTGCTGGGCGGGCACACCAACACAGTCGGGGCCCTCGCCACCAATTC
CGTGGACCCGCAGATCATCACTGGCTCCTACGATTCCACGATCAAGCTCT
GGGATATCGTTGCTGGCAAGTCGATGGCTACCCTCACGAACCACAAAAAA
GCTGTGCGCGACCTGAAGGTGCACCCGAAGGAGCTCTCATTCGTCTCCGG
TGCCCAAGACAACCTGAAAAAATGGCAAGTCCGCGACGGGAAGTTCTTGA
AGAACCTGAGTGGTCACAATGCCGTCATCAACACGCTGGCCATAAATGAG
GACAATGTACTGGTCTCATGCGGGGATAATGGAAGCCTTCGTTTTTGGGA
CTACCAGACTGGATATTGCTTTCAGAGGCTGGAGACGATTGTGCAACCGG
GCTCCTTGGACTGCGAGGCAGGGATCTATGCTTCGGCTTTCGATATGAGC
GGGACCCGCTTTTTAACGTGCGAGGCAGACAAGACGGTCAAAATCTGGAA
AGAGGACGCGGAAGCAAGCCCCGAGACTCACCCGATCGACATGGAGGCCT
GGAAGCAAGAGTGCCTTTCCCATAAGCGGTGGTAA

Synonyms

Publications