rna3045, rna3045 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3045
Unique Name	rna3045
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	471
Alignment location	CM002460.1:557369..559420 -

Link to JBrowse

Properties


Property Name	Value
Product	SANT/Myb domain protein
Orig transcript id	gnl\|cribi\|Naga_100059g24.8063.mrna
Orig protein id	gnl\|cribi\|Naga_100059g24.8063
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:557369..559420 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100059g24	gene2923	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27658.1	cds3037	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3045	rna3045-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:557369..559420-
coding sequence from alignment at CM002460.1:557369..559420-

mRNA sequence

>rna3045 ID=rna3045|Name=rna3045|organism=Nannochloropsis gaditana|type=mRNA|length=471bp
ATGCTGTCGTATGAAGCAAACGGTTTGGAATCTATGGCGTGGCGCGAGTG
GGGACAGAGGAGACGAGTAGGATGCGAGGGATTTACAACCGGAAAGAAAC
AAATGCCGTGGTATGATGATAAAGGGGGGTTTAGAGTCAGCAAATATGAT
GGCTGGCTCTCGCCGCATGTGCATGATATGAAAGACAGGGAGAACAACAG
ACGAAAAAACGAAGCTTGGTGTATGCTAGCAAGGAGCCAGTTGCCGAGAG
ACCTGCTCGATGGTGGACGGAGACGGGAGCTTGAAAATGTGGAGTGTAGG
GTGAAGCGCAGAATGCAGAGAATGGCCGAGGAAGCAGTGCTTTGGATGGT
GAAGGAGGAGAGAGTATTCCGAGGAGATGAGAACATAAATGAGAGGAACG
AAGCAAGACTCGACACTCACGCAGAAAAATATGCTTTCCGTCTCGATCCC
ACGGGTACATCTTGGCTGTGA

protein sequence of rna3045

>rna3045-protein ID=rna3045-protein|Name=rna3045|organism=Nannochloropsis gaditana|type=polypeptide|length=683bp
MARPKKGYMDEEEGSTTGRWTTEEHALFEDGLRKYGKQWKRIAEEIPSRT
VVQIRTHAQKYFLKLAKIEPATSTSIALKPPTNHNQFYPHVHAHNHGLHS
NAAFTSLTGYPSNGNGNVGPDMELSGQGSSMDLPLSLTRKKRSVGKSTYR
RLVPGLDGDEMEEEIGCFEADKLEKEGDGINEEDEGCPFRSSTLTSRGRV
SRPPRNKSTFPSHPSSPAGIGMRGEGFGSGIDTSHTTLEGIPQNGASARA
VGTALRKQQKQRARRTAPLEQNGLRGSGSVFSSASSLTHSIWGALHTSST
DPTPSSLQSLPPRGLMNAEDSGCRPGAGVGPAGGLMVRIPMGEEHALDME
DNLFAAGELNGLFESLREGALVGAPTQTPTSVMHLYPDMDDFPDAMGAHV
HGPEEDGKGEGKRERVGGANEALPGSDRPDYMLGVPGSLQSTGCCGSSTT
SASSGVAGTTEGEEEEEEEALGEGEDAFSHLHELAGRGAPDWADAFEEAL
GALEGAEGVGEEGALGLHALQQSERLEPMGREASSNSLTDSSNTDTYLPS
DESDGEQAGARPHLGSHLVRGLEDCGVENGPVGKRARLSYGYGQEGGEGF
TSSLHTRGTSMAPSLVKEQAWKGEEGEKKRGEAAGGEEEEEDYGYFTTTE
EDLDHFLVNILDGVTVTSTAGSATVGSVGVAPV

mRNA from alignment at CM002460.1:557369..559420-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3045 ID=rna3045|Name=rna3045|organism=Nannochloropsis gaditana|type=mRNA|length=2052bp|location=Sequence derived from alignment at CM002460.1:557369..559420- (Nannochloropsis gaditana)
ATGGCGCGACCTAAGAAAGGGTATATGGATGAGGAGGAGGGCAGCACGAC
GGGGCGATGGACGACAGAGGAGCACGCGCTCTTCGAGGATGGATTACGAA
AATATGGCAAGCAATGGAAACGCATAGCCGAAGAGATTCCTTCGCGCACG
GTTGTCCAGATTCGGACGCACGCCCAGAAATATTTCCTGAAGCTGGCCAA
AATTGAGCCTGCCACCAGCACATCCATCGCGCTGAAACCTCCGACCAATC
ACAACCAGTTTTACCCGCACGTGCATGCACACAATCATGGCTTGCATTCT
AATGCCGCGTTCACATCCTTGACTGGTTATCCTTCGAATGGAAATGGCAA
CGTGGGCCCCGACATGGAACTATCAGGGCAAGGCTCAAGTATGGACCTTC
CACTCTCCTTGACCCGCAAAAAGCGCTCGGTGGGGAAGAGCACATACCGG
CGACTGGTACCAGGCTTGGACGGGGATGAGATGGAGGAGGAAATTGGCTG
TTTCGAGGCAGATAAGTTGGAAAAAGAAGGGGACGGCATCAACGAGGAGG
ACGAGGGCTGCCCCTTTCGCAGTTCAACCCTGACCTCCCGGGGCCGCGTG
TCGCGCCCTCCTCGCAATAAATCTACCTTCCCTTCTCATCCTTCCAGCCC
CGCGGGCATAGGGATGAGGGGTGAGGGTTTTGGAAGTGGCATCGACACAA
GCCACACCACCTTGGAAGGTATCCCTCAGAACGGTGCCAGTGCGCGGGCA
GTGGGCACCGCCTTGAGAAAGCAGCAGAAGCAGCGGGCTCGTCGAACTGC
TCCCTTGGAGCAGAATGGGCTGAGGGGCAGTGGCTCCGTCTTCTCTTCGG
CCTCCTCGCTGACTCATTCCATTTGGGGGGCTTTGCACACGAGCTCCACC
GACCCGACCCCCTCCTCCCTCCAGTCTCTTCCCCCCCGCGGGCTCATGAA
CGCGGAGGACAGCGGCTGCAGACCTGGGGCAGGTGTGGGACCTGCGGGAG
GGCTGATGGTCCGGATTCCCATGGGCGAGGAGCACGCGCTGGACATGGAG
GACAACCTGTTCGCGGCGGGGGAACTGAATGGATTGTTCGAGTCCCTGCG
AGAGGGGGCCCTGGTGGGGGCTCCGACGCAGACGCCGACGTCCGTCATGC
ATCTCTACCCGGACATGGACGATTTTCCCGACGCAATGGGGGCGCATGTC
CATGGGCCCGAGGAGGACGGAAAGGGGGAGGGGAAGCGGGAGCGGGTGGG
AGGGGCCAACGAAGCCCTGCCTGGATCTGACCGTCCGGACTACATGCTCG
GCGTCCCTGGTAGCCTGCAGTCTACAGGATGCTGCGGGTCCTCCACGACC
TCGGCGTCCTCCGGCGTGGCGGGAACGACCGAGGGGGAGGAGGAGGAGGA
GGAGGAGGCCTTGGGCGAGGGGGAGGACGCGTTCTCCCATCTGCACGAGC
TGGCGGGGCGCGGGGCGCCAGACTGGGCGGACGCGTTCGAGGAGGCTTTG
GGGGCCTTGGAAGGGGCGGAGGGCGTAGGCGAAGAAGGGGCGCTGGGCCT
GCATGCTCTGCAGCAGAGCGAGCGGCTGGAGCCCATGGGGCGGGAGGCGT
CGAGCAACAGCCTGACCGACTCCTCCAACACGGACACCTATCTGCCCTCG
GACGAGAGCGACGGGGAGCAGGCGGGGGCCAGGCCTCACCTGGGCTCTCA
CCTGGTGCGTGGTCTGGAGGACTGCGGGGTTGAGAATGGGCCGGTGGGAA
AGCGAGCGCGCCTGAGCTACGGCTACGGGCAGGAAGGGGGGGAGGGTTTT
ACCTCCTCCCTCCACACGAGGGGGACCTCGATGGCGCCCTCCTTGGTGAA
GGAGCAGGCGTGGAAGGGGGAGGAAGGGGAGAAGAAGCGAGGGGAGGCGG
CGGGTGGGGAGGAAGAGGAAGAGGACTACGGGTATTTCACGACCACGGAA
GAGGATTTGGACCATTTCCTCGTGAACATTTTGGACGGCGTGACCGTTAC
TTCAACGGCCGGTTCAGCGACAGTCGGGAGCGTGGGTGTTGCGCCCGTTT
GA

Coding sequence (CDS) from alignment at CM002460.1:557369..559420-

>rna3045 ID=rna3045|Name=rna3045|organism=Nannochloropsis gaditana|type=CDS|length=2052bp|location=Sequence derived from alignment at CM002460.1:557369..559420- (Nannochloropsis gaditana)
ATGGCGCGACCTAAGAAAGGGTATATGGATGAGGAGGAGGGCAGCACGAC
GGGGCGATGGACGACAGAGGAGCACGCGCTCTTCGAGGATGGATTACGAA
AATATGGCAAGCAATGGAAACGCATAGCCGAAGAGATTCCTTCGCGCACG
GTTGTCCAGATTCGGACGCACGCCCAGAAATATTTCCTGAAGCTGGCCAA
AATTGAGCCTGCCACCAGCACATCCATCGCGCTGAAACCTCCGACCAATC
ACAACCAGTTTTACCCGCACGTGCATGCACACAATCATGGCTTGCATTCT
AATGCCGCGTTCACATCCTTGACTGGTTATCCTTCGAATGGAAATGGCAA
CGTGGGCCCCGACATGGAACTATCAGGGCAAGGCTCAAGTATGGACCTTC
CACTCTCCTTGACCCGCAAAAAGCGCTCGGTGGGGAAGAGCACATACCGG
CGACTGGTACCAGGCTTGGACGGGGATGAGATGGAGGAGGAAATTGGCTG
TTTCGAGGCAGATAAGTTGGAAAAAGAAGGGGACGGCATCAACGAGGAGG
ACGAGGGCTGCCCCTTTCGCAGTTCAACCCTGACCTCCCGGGGCCGCGTG
TCGCGCCCTCCTCGCAATAAATCTACCTTCCCTTCTCATCCTTCCAGCCC
CGCGGGCATAGGGATGAGGGGTGAGGGTTTTGGAAGTGGCATCGACACAA
GCCACACCACCTTGGAAGGTATCCCTCAGAACGGTGCCAGTGCGCGGGCA
GTGGGCACCGCCTTGAGAAAGCAGCAGAAGCAGCGGGCTCGTCGAACTGC
TCCCTTGGAGCAGAATGGGCTGAGGGGCAGTGGCTCCGTCTTCTCTTCGG
CCTCCTCGCTGACTCATTCCATTTGGGGGGCTTTGCACACGAGCTCCACC
GACCCGACCCCCTCCTCCCTCCAGTCTCTTCCCCCCCGCGGGCTCATGAA
CGCGGAGGACAGCGGCTGCAGACCTGGGGCAGGTGTGGGACCTGCGGGAG
GGCTGATGGTCCGGATTCCCATGGGCGAGGAGCACGCGCTGGACATGGAG
GACAACCTGTTCGCGGCGGGGGAACTGAATGGATTGTTCGAGTCCCTGCG
AGAGGGGGCCCTGGTGGGGGCTCCGACGCAGACGCCGACGTCCGTCATGC
ATCTCTACCCGGACATGGACGATTTTCCCGACGCAATGGGGGCGCATGTC
CATGGGCCCGAGGAGGACGGAAAGGGGGAGGGGAAGCGGGAGCGGGTGGG
AGGGGCCAACGAAGCCCTGCCTGGATCTGACCGTCCGGACTACATGCTCG
GCGTCCCTGGTAGCCTGCAGTCTACAGGATGCTGCGGGTCCTCCACGACC
TCGGCGTCCTCCGGCGTGGCGGGAACGACCGAGGGGGAGGAGGAGGAGGA
GGAGGAGGCCTTGGGCGAGGGGGAGGACGCGTTCTCCCATCTGCACGAGC
TGGCGGGGCGCGGGGCGCCAGACTGGGCGGACGCGTTCGAGGAGGCTTTG
GGGGCCTTGGAAGGGGCGGAGGGCGTAGGCGAAGAAGGGGCGCTGGGCCT
GCATGCTCTGCAGCAGAGCGAGCGGCTGGAGCCCATGGGGCGGGAGGCGT
CGAGCAACAGCCTGACCGACTCCTCCAACACGGACACCTATCTGCCCTCG
GACGAGAGCGACGGGGAGCAGGCGGGGGCCAGGCCTCACCTGGGCTCTCA
CCTGGTGCGTGGTCTGGAGGACTGCGGGGTTGAGAATGGGCCGGTGGGAA
AGCGAGCGCGCCTGAGCTACGGCTACGGGCAGGAAGGGGGGGAGGGTTTT
ACCTCCTCCCTCCACACGAGGGGGACCTCGATGGCGCCCTCCTTGGTGAA
GGAGCAGGCGTGGAAGGGGGAGGAAGGGGAGAAGAAGCGAGGGGAGGCGG
CGGGTGGGGAGGAAGAGGAAGAGGACTACGGGTATTTCACGACCACGGAA
GAGGATTTGGACCATTTCCTCGTGAACATTTTGGACGGCGTGACCGTTAC
TTCAACGGCCGGTTCAGCGACAGTCGGGAGCGTGGGTGTTGCGCCCGTTT
GA

Synonyms

Publications