EWM27658.1, cds3037 (CDS) Nannochloropsis gaditana

Overview
NameEWM27658.1
Unique Namecds3037
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:557369..559420 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27658.1
ProductSANT/Myb domain protein
Orig transcript idgnl|cribi|Naga_100059g24.8063.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:557369..559420 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017930Myb_dom
IPR009057Homeodomain-like
IPR006447Myb_dom_plants
IPR001005SANT/Myb
Homology
BLAST of EWM27658.1 vs. NCBI_GenBank
Match: gi|585109928|gb|EWM27658.1| (SANT/Myb domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1383.24 bits (3579), Expect = 0.000e+0
Identity = 683/683 (100.00%), Postives = 683/683 (100.00%), Query Frame = 0
Query:    1 MARPKKGYMDEEEGSTTGRWTTEEHALFEDGLRKYGKQWKRIAEEIPSRTVVQIRTHAQKYFLKLAKIEPATSTSIALKPPTNHNQFYPHVHAHNHGLHSNAAFTSLTGYPSNGNGNVGPDMELSGQGSSMDLPLSLTRKKRSVGKSTYRRLVPGLDGDEMEEEIGCFEADKLEKEGDGINEEDEGCPFRSSTLTSRGRVSRPPRNKSTFPSHPSSPAGIGMRGEGFGSGIDTSHTTLEGIPQNGASARAVGTALRKQQKQRARRTAPLEQNGLRGSGSVFSSASSLTHSIWGALHTSSTDPTPSSLQSLPPRGLMNAEDSGCRPGAGVGPAGGLMVRIPMGEEHALDMEDNLFAAGELNGLFESLREGALVGAPTQTPTSVMHLYPDMDDFPDAMGAHVHGPEEDGKGEGKRERVGGANEALPGSDRPDYMLGVPGSLQSTGCCGSSTTSASSGVAGTTEGEEEEEEEALGEGEDAFSHLHELAGRGAPDWADAFEEALGALEGAEGVGEEGALGLHALQQSERLEPMGREASSNSLTDSSNTDTYLPSDESDGEQAGARPHLGSHLVRGLEDCGVENGPVGKRARLSYGYGQEGGEGFTSSLHTRGTSMAPSLVKEQAWKGEEGEKKRGEAAGGEEEEEDYGYFTTTEEDLDHFLVNILDGVTVTSTAGSATVGSVGVAPV 683
            MARPKKGYMDEEEGSTTGRWTTEEHALFEDGLRKYGKQWKRIAEEIPSRTVVQIRTHAQKYFLKLAKIEPATSTSIALKPPTNHNQFYPHVHAHNHGLHSNAAFTSLTGYPSNGNGNVGPDMELSGQGSSMDLPLSLTRKKRSVGKSTYRRLVPGLDGDEMEEEIGCFEADKLEKEGDGINEEDEGCPFRSSTLTSRGRVSRPPRNKSTFPSHPSSPAGIGMRGEGFGSGIDTSHTTLEGIPQNGASARAVGTALRKQQKQRARRTAPLEQNGLRGSGSVFSSASSLTHSIWGALHTSSTDPTPSSLQSLPPRGLMNAEDSGCRPGAGVGPAGGLMVRIPMGEEHALDMEDNLFAAGELNGLFESLREGALVGAPTQTPTSVMHLYPDMDDFPDAMGAHVHGPEEDGKGEGKRERVGGANEALPGSDRPDYMLGVPGSLQSTGCCGSSTTSASSGVAGTTEGEEEEEEEALGEGEDAFSHLHELAGRGAPDWADAFEEALGALEGAEGVGEEGALGLHALQQSERLEPMGREASSNSLTDSSNTDTYLPSDESDGEQAGARPHLGSHLVRGLEDCGVENGPVGKRARLSYGYGQEGGEGFTSSLHTRGTSMAPSLVKEQAWKGEEGEKKRGEAAGGEEEEEDYGYFTTTEEDLDHFLVNILDGVTVTSTAGSATVGSVGVAPV
Sbjct:    1 MARPKKGYMDEEEGSTTGRWTTEEHALFEDGLRKYGKQWKRIAEEIPSRTVVQIRTHAQKYFLKLAKIEPATSTSIALKPPTNHNQFYPHVHAHNHGLHSNAAFTSLTGYPSNGNGNVGPDMELSGQGSSMDLPLSLTRKKRSVGKSTYRRLVPGLDGDEMEEEIGCFEADKLEKEGDGINEEDEGCPFRSSTLTSRGRVSRPPRNKSTFPSHPSSPAGIGMRGEGFGSGIDTSHTTLEGIPQNGASARAVGTALRKQQKQRARRTAPLEQNGLRGSGSVFSSASSLTHSIWGALHTSSTDPTPSSLQSLPPRGLMNAEDSGCRPGAGVGPAGGLMVRIPMGEEHALDMEDNLFAAGELNGLFESLREGALVGAPTQTPTSVMHLYPDMDDFPDAMGAHVHGPEEDGKGEGKRERVGGANEALPGSDRPDYMLGVPGSLQSTGCCGSSTTSASSGVAGTTEGEEEEEEEALGEGEDAFSHLHELAGRGAPDWADAFEEALGALEGAEGVGEEGALGLHALQQSERLEPMGREASSNSLTDSSNTDTYLPSDESDGEQAGARPHLGSHLVRGLEDCGVENGPVGKRARLSYGYGQEGGEGFTSSLHTRGTSMAPSLVKEQAWKGEEGEKKRGEAAGGEEEEEDYGYFTTTEEDLDHFLVNILDGVTVTSTAGSATVGSVGVAPV 683          
BLAST of EWM27658.1 vs. NCBI_GenBank
Match: gi|950893384|ref|XP_014528164.1| (hypothetical protein JH06_3996 [Blastocystis sp. subtype 4] >gi|902862779|gb|KNB44725.1| hypothetical protein JH06_3996 [Blastocystis sp. subtype 4])

HSP 1 Score: 83.9593 bits (206), Expect = 2.133e-14
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 0
Query:   16 TTGRWTTEEHALFEDGLRKYGKQWKRIAEEIPSRTVVQIRTHAQKYFLKLAKIEPA 71
              GRW+  EH LF  GL+K+GK WK IA EIP+RTVVQ+RTHAQKYF KL+   P+
Sbjct:   62 VVGRWSATEHELFLQGLQKFGKDWKAIANEIPTRTVVQVRTHAQKYFQKLSNAAPS 117          
BLAST of EWM27658.1 vs. NCBI_GenBank
Match: gi|1173946604|gb|OQR95117.1| (hypothetical protein ACHHYP_00385 [Achlya hypogyna])

HSP 1 Score: 81.2629 bits (199), Expect = 3.738e-14
Identity = 35/64 (54.69%), Postives = 48/64 (75.00%), Query Frame = 0
Query:    6 KGYMDEEEGSTT--GRWTTEEHALFEDGLRKYGKQWKRIAEEIPSRTVVQIRTHAQKYFLKLAK 67
            K  MD+E  ST   GRW  EEH LF +GLR YGK WK++A+ +P+R+ VQIRTHAQK+F ++++
Sbjct:   43 KAEMDDESPSTKRGGRWLAEEHQLFLEGLRAYGKNWKKVAQVVPTRSTVQIRTHAQKFFKRMSQ 106          
BLAST of EWM27658.1 vs. NCBI_GenBank
Match: gi|1210516787|dbj|GAX24276.1| (protein MYSM1 [Fistulifera solaris])

HSP 1 Score: 86.2705 bits (212), Expect = 4.282e-14
Identity = 39/54 (72.22%), Postives = 42/54 (77.78%), Query Frame = 0
Query:   14 GSTTGRWTTEEHALFEDGLRKYGKQWKRIAEEIPSRTVVQIRTHAQKYFLKLAK 67
            G  TGRWT EEH LF  GL ++GK WK+IA  I SRTVVQIRTHAQKYF KLAK
Sbjct:   95 GENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAK 148          
BLAST of EWM27658.1 vs. NCBI_GenBank
Match: gi|1210512502|dbj|GAX28359.1| (protein MYSM1 [Fistulifera solaris])

HSP 1 Score: 86.2705 bits (212), Expect = 4.849e-14
Identity = 39/54 (72.22%), Postives = 42/54 (77.78%), Query Frame = 0
Query:   14 GSTTGRWTTEEHALFEDGLRKYGKQWKRIAEEIPSRTVVQIRTHAQKYFLKLAK 67
            G  TGRWT EEH LF  GL ++GK WK+IA  I SRTVVQIRTHAQKYF KLAK
Sbjct:   96 GENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAK 149          
BLAST of EWM27658.1 vs. NCBI_GenBank
Match: gi|219128113|ref|XP_002184266.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404497|gb|EEC44444.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 85.8853 bits (211), Expect = 5.659e-14
Identity = 39/54 (72.22%), Postives = 42/54 (77.78%), Query Frame = 0
Query:   14 GSTTGRWTTEEHALFEDGLRKYGKQWKRIAEEIPSRTVVQIRTHAQKYFLKLAK 67
            G  TGRWT EEH LF  GL ++GK WK+IA  I SRTVVQIRTHAQKYF KLAK
Sbjct:  114 GENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAK 167          
BLAST of EWM27658.1 vs. NCBI_GenBank
Match: gi|397610547|gb|EJK60893.1| (hypothetical protein THAOC_18691 [Thalassiosira oceanica])

HSP 1 Score: 84.7297 bits (208), Expect = 7.696e-14
Identity = 38/51 (74.51%), Postives = 41/51 (80.39%), Query Frame = 0
Query:   17 TGRWTTEEHALFEDGLRKYGKQWKRIAEEIPSRTVVQIRTHAQKYFLKLAK 67
            TGRWT EEH LF  GL ++GK WK+IA  I SRTVVQIRTHAQKYF KLAK
Sbjct:  310 TGRWTAEEHRLFLQGLERHGKGWKKIATLIKSRTVVQIRTHAQKYFQKLAK 360          
BLAST of EWM27658.1 vs. NCBI_GenBank
Match: gi|1072235817|gb|OEU20545.1| (hypothetical protein FRACYDRAFT_165241, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 75.0998 bits (183), Expect = 1.864e-13
Identity = 36/49 (73.47%), Postives = 39/49 (79.59%), Query Frame = 0
Query:   19 RWTTEEHALFEDGLRKYGKQWKRIAEEIPSRTVVQIRTHAQKYFLKLAK 67
            RWT+EEH LF  GL  +GK WK+IA  I SRTVVQIRTHAQKYF KLAK
Sbjct:    1 RWTSEEHNLFLQGLELHGKGWKKIAGLIKSRTVVQIRTHAQKYFQKLAK 49          
BLAST of EWM27658.1 vs. NCBI_GenBank
Match: gi|585113115|gb|EWM30452.1| (SANT/Myb domain protein [Nannochloropsis gaditana])

HSP 1 Score: 84.3445 bits (207), Expect = 2.772e-13
Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 0
Query:   17 TGRWTTEEHALFEDGLRKYGKQWKRIAEEIPSRTVVQIRTHAQKYFLKLAK 67
            TGRWT EEH LF  GL  +GK WK+IA+ I +RTVVQIRTHAQKYF KLAK
Sbjct:  100 TGRWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAK 150          
BLAST of EWM27658.1 vs. NCBI_GenBank
Match: gi|224007633|ref|XP_002292776.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220971638|gb|EED89972.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 84.7297 bits (208), Expect = 2.845e-13
Identity = 38/51 (74.51%), Postives = 41/51 (80.39%), Query Frame = 0
Query:   17 TGRWTTEEHALFEDGLRKYGKQWKRIAEEIPSRTVVQIRTHAQKYFLKLAK 67
            TGRWT EEH LF  GL ++GK WK+IA  I SRTVVQIRTHAQKYF KLAK
Sbjct:  418 TGRWTAEEHRLFLQGLEQHGKGWKKIAGLIKSRTVVQIRTHAQKYFQKLAK 468          
The following BLAST results are available for this feature:
BLAST of EWM27658.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109928|gb|EWM27658.1|0.000e+0100.00SANT/Myb domain protein [Nannochloropsis gaditana][more]
gi|950893384|ref|XP_014528164.1|2.133e-1462.50hypothetical protein JH06_3996 [Blastocystis sp. s... [more]
gi|1173946604|gb|OQR95117.1|3.738e-1454.69hypothetical protein ACHHYP_00385 [Achlya hypogyna... [more]
gi|1210516787|dbj|GAX24276.1|4.282e-1472.22protein MYSM1 [Fistulifera solaris][more]
gi|1210512502|dbj|GAX28359.1|4.849e-1472.22protein MYSM1 [Fistulifera solaris][more]
gi|219128113|ref|XP_002184266.1|5.659e-1472.22predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|397610547|gb|EJK60893.1|7.696e-1474.51hypothetical protein THAOC_18691 [Thalassiosira oc... [more]
gi|1072235817|gb|OEU20545.1|1.864e-1373.47hypothetical protein FRACYDRAFT_165241, partial [F... [more]
gi|585113115|gb|EWM30452.1|2.772e-1372.55SANT/Myb domain protein [Nannochloropsis gaditana][more]
gi|224007633|ref|XP_002292776.1|2.845e-1374.51predicted protein [Thalassiosira pseudonana CCMP13... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3045rna3045Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications