rna3043, rna3043 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3043
Unique Name	rna3043
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1811
Alignment location	CM002460.1:554690..556435 +

Link to JBrowse

Properties


Property Name	Value
Product	3-methyladenine dna glycosylase
Orig transcript id	gnl\|cribi\|Naga_100059g22.8056.mrna
Orig protein id	gnl\|cribi\|Naga_100059g22.8056
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:554690..556435 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100059g22	gene2921	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3043	rna3043-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27651.1	cds3035	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:554690..556435+
coding sequence from alignment at CM002460.1:554690..556435+

mRNA sequence

>rna3043 ID=rna3043|Name=rna3043|organism=Nannochloropsis gaditana|type=mRNA|length=1811bp
CCAGTGTCACATGGAGAAGGAGGAGAGCTGACAGGAAAAAATGCAAAACG
GCCCCCGTTCCAGTAGGGTAGACGGTCCTCGTTGTCGAGTACTGCAGCAC
ACAGTCCCTGTTGTAATTTAAATATATATTGGAAGGGTGTGGACAGCCAG
GAAGCTGTCGACTGGCATATGTTGGGCGGTGCCTGATGGAGCACGGCAGA
CACAATTCACGGTCTCTGCTTTGCCGGTTGATGCCCTGTCCCCGCCACCT
TGCATATCGACCAATTCCTGGCACCGCTTTGGCATTGGCCGTTATGGTGT
CCCTCTTGACTCTGGGTAGCTGCACACCTGCCAAGGTTATCATTACGAAA
AGATACGCGTCCGTATGGGTCTCAAGGGCCTCCAGCCTTTCTGCCCCCCC
CCGCCTGCCACTACCTCTCTTCATAATATCCCGGTATACTTCCCAGCACC
AGAAACCGCCGCCCCAGCATCCTCTCCGCAAGGCAGCACTCCCTTCCATT
CGTGCCAGATACAGTCAGCGGCCAGCAACGCCTACAGTCTTAGAAGCAAA
TCTGACCCTGGGCGCCTCTCCAAATCAGACGGCCGAAGTAAACCCCTCTT
CCCCAAGTGCATCCCCTCTTAAACGCGCTCGGCCCCGGCGGACGGTCACT
GGAGGCTTAAAGAATTTACCTGTGACCCCGCCTGCCAATGAGCTACTGAA
TCGGGCTGTGCGGCTATCCAAGTGGTTAAAGGTGGACGAAGAAAAAATCA
AAAACCAACGCCAGCGCGCGCGCAAGTTGGGCGCCTTGAAACTCGACACG
CTGACCAAGAGCATCTCCAAACCCCTGAGGGACGTGCTTAAAGCCTACGA
CTACGAGCTGGCCGTCCTCCACCCCTTCGAGGCGACCCTGGCGGACTTGA
CTGTCCGAGCCCGGGCCAAGCAGGGGCACCAGAGCCTGCCCGAGGTCCTG
AAGGCCGTCAACGAATTGCGCAAGTCGGTCCTCGAAACGGGGAAAAGGCA
CGCGGCGGCAGCCAAGAACGCCACGTCCAAGCAAGAGGCCATCGAGGCCA
CAGAGGCGGGCTTTCGGGAGGTGGAGTCTTTGATGCTGGAGGGCGCTGAT
GTGGTCTTGGATTTGATCGACGTCCAGAAGGCGTTGCGTAAAATTCCCAT
CGTGCAGTTGGGCATGCCCACGGTCGTGCTGGTCGGGGCGCCGAACGTGG
GGAAGAGCTCCATCGTCCGGGCCATTTCCACGGGGACCCCGGAAGTGAAC
AACTACCCTTTCACCACGCGCGGGATGACGCTCGGACACCTCCAGTACGA
GGACTGGGTGGAGGGGCAGTGCCAGGTGATGGACACGCCAGGGGTCCTGA
ATCGGCCGGATGAGGAGCGCAACGAGATGGAGTCCCTGACGCTCGCCTCC
ATGCTCCACCTGCCCACCGCCGTTATGTTCGTCCTGGATCTGACGGGCAA
TTCTGGGGCACTCTCGAGCATCGAGAATCAGATTCAGATTCGAAACGGCC
TGCGCGCGCGTTTCCCTAAGCGACCCTGGGTGGACGTGATCAGCAAAGCC
GACTTGCCCATGGACCAAGAGGACCCGGCCGTAGCCCGTGCCCCTGCAGG
GGCCTTAAAGGTGTCTGTGGCGGATGGTACAGGCTTAGCGGAAGTGGAAG
CACGGGTGAAGGAAATGCTTCTAGACGTGCGGGAAGTCTTGTCAGCGATA
GGGTTGGCAGAGGGGCCGGGAGGGCGTGTGGAAGGGGAAGGAAGTGGCGG
GTAAAGTGAAAGGGCATTGTAATCAAAATACGCACAAAAGTACCGCGCAA
AGTAGAGGACA

protein sequence of rna3043

>rna3043-protein ID=rna3043-protein|Name=rna3043|organism=Nannochloropsis gaditana|type=polypeptide|length=420bp
MPVDSFLAVERDCVLQYSTTRTVYPTGTGAVLHFFLSALLLLHVTLVTTS
CGKMNNRKMPPIATRAAKAIGASTFISATSARRRRLVSVSAKIDDENGSA
LMETSTEASSSRPSNPLESSIHVTTSRTPTRRLSENFSSSINSSVETVRA
MLRNVSQRVESAVAFEAHHLPVVKCTDTAHHRVSTPKSFEADALITARWL
LGARLVRVLPCGTRLSGKIVEVEAYLGPHDKGAHSYGGKRTPRLEPMFAA
GGVAYIYHMHACSCLNVIASKEGDPVGVLIRALEPVEGTSIMLQNRLRAR
ALRGKNKTNRGPIPHVADMNASEREKLLAELCAGPGRLCHALAVDHLMSG
SDLVGGAQLFLERGEHVPASQLVVSPRIGIEYAGLWKEAPLRFSVLGNRH
VSKPWPRAQDKKMRKRKKIS

mRNA from alignment at CM002460.1:554690..556435+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3043 ID=rna3043|Name=rna3043|organism=Nannochloropsis gaditana|type=mRNA|length=1746bp|location=Sequence derived from alignment at CM002460.1:554690..556435+ (Nannochloropsis gaditana)
ATGCCAGTCGACAGCTTCCTGGCTGTAGAAAGGTATAAAATTTCAAAAGT
GAAGCGTTTGTGAGCGAAGGGACAGGGAAGTTGTAGATTTGTGGGCCACA
GATAAAGGGTTGTTTCCCAGCCGCCGCTTCAGCAAGTCATGtatctgcct
ccctcccgggcgCATTTCGACCTAGATGTTATGCTCCCTCACCTGTCCAC
ACCCTTCCAATATATATTTAAATTACAACAGGGACTGTGTGCTGCAGTAC
TCGACAACGAGGACCGTCTACCCTACTGGAACGGGGGCCGttttgcattt
tttcctgtcagctctcctccttctccatgtgACACTGGTAACAACCTCCT
GTGGGAAAATGAATAACAGGAAAATGCCCCCCATTGCCACGAGGGCGGCG
AAGGCAATCGGTGCATCGACATTTATTTCCGCCACAAGTGCTCGAAGACG
ACGTCTTGTCTCCGTTTCGGCTAAGATAGATGATGAAAATGGCAGCGCGT
TGATGGAAACCTCCACGGAAGCTTCCTCATCAAGGCCCTCAAATCCCTTG
GAATCCAGCATCCATGTGACAACAAGCAGAACCCCAACGCGCCGGCTTTC
GGAAAATTTTTCATCGAGTATTAACTCATCAGTCGAGACAGTGAGGGCAA
TGCTGCGAAACGTGAGCCAGCGCGTGGAAAGCGCGGTCGCTTTTGAGGCT
CACCACCTTCCTGTAGTGAAGTGCACCGACACAGCGCACCATCGGGTCTC
AACGCCAAAGAGCTTCGAAGCCGACGCTTTGATTACGGCACGCTGGCTTT
TGGGTGCGCGTTTGGTGCGTGTGCTTCCCTGTGGCACTCGTCTGAGCGGC
AAGATAGTCGAAGTGGAGGCCTACCTCGGACCTCATGACAAGGGCGCACA
CAGCTATGGAGGCAAGAGGACACCGCGCCTGGAGCCCATGTTTGCAGCGG
GCGGTGTAGCCTATATCTACCACATGCATGCTTGTTCCTGTCTCAACGTC
ATAGCCTCCAAAGAGGGCGACCCCGTGGGAGTCTTGATCCGGGCCCTGGA
GCCCGTGGAGGGGACCTCGATCATGCTGCAGAATAGGCTCAGGGCGCGGG
CACTTCGAGGAAAGAACAAAACAAACAGGGGGCCCATACCGCATGTAGCG
GATATGAATGccagcgagagggagaagcttCTGGCGGAGCTCTGTGCGGG
CCCTGGTCGCCTCTGTCATGCCCTGGCAGTCGATCACCTAATGAGCGGCT
CCGACCTGGTGGGAGGAGCGCAGCTTTtcttggagaggggggaacaCGTG
CCTGCGTCCCAGTTGGTGGTCTCCCCGCGGATAGGGATAGAGTATGCAGG
CTTGTGGAAGGAAGCGCCGCTCCGTTTTTCGGTGTTGGGCAACAGACATG
TGAGCAAGCCCTGGCCCCGGGCGCAGGACAAGAAAATGCGGAAGCGGAAA
AAGATTTCCTGAAGCAGACCGATGGAAGATTGGATGGGTCTGCGCGATGC
TGTGAAGGGTAGAGACCCTGTAGGAGAGCGCGCATAGAGGAACTTTGTAT
GGAGACGCCTCTAcgtaagggagggaaaacggaAAGAAATTGGGCCGGGC
GactgtctccttctccataGTGACCTTGGCCCTATGAGGCTCACAGCCAA
GATGTACCCGTGGGCTGTCCGTGTTTAGGGAATCAAAGGTTACGCAGACG
CACGATGACAAAAAGAAAACATCGAGACGGAAAGCATATTTTTCTG

Coding sequence (CDS) from alignment at CM002460.1:554690..556435+

>rna3043 ID=rna3043|Name=rna3043|organism=Nannochloropsis gaditana|type=CDS|length=2526bp|location=Sequence derived from alignment at CM002460.1:554690..556435+ (Nannochloropsis gaditana)
ATGCCAGTCGACAGCTTCCTGGCTGTAGAAAGGGACTGTGTGCTGCAGTA
CTCGACAACGAGGACCGTCTACCCTACTGGAACGGGGGCCGttttgcatt
ttttcctgtcagctctcctccttctccatgtgACACTGGTAACAACCTCC
TGTGGGAAAATGAATAACAGGAAAATGCCCCCCATTGCCACGAGGGCGGC
GAAGGCAATCGGTGCATCGACATTTATTTCCGCCACAAGTGCTCGAAGAC
GACGTCTTGTCTCCGTTTCGGCTAAGATAGATGATGAAAATGGCAGCGCG
TTGATGGAAACCTCCACGGAAGCTTCCTCATCAAGGCCCTCAAATCCCTT
GGAATCCAGCATCCATGTGACAACAAGCAGAACCCCAACGCGCCGGCTTT
CGGAAAATTTTTCATCGAGTATTAACTCATCAGTCGAGACAGTGAGGGCA
ATGCTGCGAAACGTGAGCCAGCGCGTGGAAAGCGCGGTCGCTTTTGAGGC
TCACCACCTTCCTGTAGTGAAGTGCACCGACACAGCGCACCATCGGGTCT
CAACGCCAAAGAGCTTCGAAGCCGACGCTTTGATTACGGCACGCTGGCTT
TTGGGTGCGCGTTTGGTGCGTGTGCTTCCCTGTGGCACTCGTCTGAGCGG
CAAGATAGTCGAAGTGGAGGCCTACCTCGGACCTCATGACAAGGGCGCAC
ACAGCTATGGAGGCAAGAGGACACCGCGCCTGGAGCCCATGTTTGCAGCG
GGCGGTGTAGCCTATATCTACCACATGCATGCTTGTTCCTGTCTCAACGT
CATAGCCTCCAAAGAGGGCGACCCCGTGGGAGTCTTGATCCGGGCCCTGG
AGCCCGTGGAGGGGACCTCGATCATGCTGCAGAATAGGCTCAGGGCGCGG
GCACTTCGAGGAAAGAACAAAACAAACAGGGGGCCCATACCGCATGTAGC
GGATATGAATGccagcgagagggagaagcttCTGGCGGAGCTCTGTGCGG
GCCCTGGTCGCCTCTGTCATGCCCTGGCAGTCGATCACCTAATGAGCGGC
TCCGACCTGGTGGGAGGAGCGCAGCTTTtcttggagaggggggaacaCGT
GCCTGCGTCCCAGTTGGTGGTCTCCCCGCGGATAGGGATAGAGTATGCAG
GCTTGTGGAAGGAAGCGCCGCTCCGTTTTTCGGTGTTGGGCAACAGACAT
GTGAGCAAGCCCTGGCCCCGGGCGCAGGACAAGAAAATGCGGAAGCGGAA
AAAGATTTCCTGAATGCCAGTCGACAGCTTCCTGGCTGTAGAAAGGGACT
GTGTGCTGCAGTACTCGACAACGAGGACCGTCTACCCTACTGGAACGGGG
GCCGttttgcattttttcctgtcagctctcctccttctccatgtgACACT
GGTAACAACCTCCTGTGGGAAAATGAATAACAGGAAAATGCCCCCCATTG
CCACGAGGGCGGCGAAGGCAATCGGTGCATCGACATTTATTTCCGCCACA
AGTGCTCGAAGACGACGTCTTGTCTCCGTTTCGGCTAAGATAGATGATGA
AAATGGCAGCGCGTTGATGGAAACCTCCACGGAAGCTTCCTCATCAAGGC
CCTCAAATCCCTTGGAATCCAGCATCCATGTGACAACAAGCAGAACCCCA
ACGCGCCGGCTTTCGGAAAATTTTTCATCGAGTATTAACTCATCAGTCGA
GACAGTGAGGGCAATGCTGCGAAACGTGAGCCAGCGCGTGGAAAGCGCGG
TCGCTTTTGAGGCTCACCACCTTCCTGTAGTGAAGTGCACCGACACAGCG
CACCATCGGGTCTCAACGCCAAAGAGCTTCGAAGCCGACGCTTTGATTAC
GGCACGCTGGCTTTTGGGTGCGCGTTTGGTGCGTGTGCTTCCCTGTGGCA
CTCGTCTGAGCGGCAAGATAGTCGAAGTGGAGGCCTACCTCGGACCTCAT
GACAAGGGCGCACACAGCTATGGAGGCAAGAGGACACCGCGCCTGGAGCC
CATGTTTGCAGCGGGCGGTGTAGCCTATATCTACCACATGCATGCTTGTT
CCTGTCTCAACGTCATAGCCTCCAAAGAGGGCGACCCCGTGGGAGTCTTG
ATCCGGGCCCTGGAGCCCGTGGAGGGGACCTCGATCATGCTGCAGAATAG
GCTCAGGGCGCGGGCACTTCGAGGAAAGAACAAAACAAACAGGGGGCCCA
TACCGCATGTAGCGGATATGAATGccagcgagagggagaagcttCTGGCG
GAGCTCTGTGCGGGCCCTGGTCGCCTCTGTCATGCCCTGGCAGTCGATCA
CCTAATGAGCGGCTCCGACCTGGTGGGAGGAGCGCAGCTTTtcttggaga
ggggggaacaCGTGCCTGCGTCCCAGTTGGTGGTCTCCCCGCGGATAGGG
ATAGAGTATGCAGGCTTGTGGAAGGAAGCGCCGCTCCGTTTTTCGGTGTT
GGGCAACAGACATGTGAGCAAGCCCTGGCCCCGGGCGCAGGACAAGAAAA
TGCGGAAGCGGAAAAAGATTTCCTGA

Synonyms

Publications