EWM27651.1, cds3035 (CDS) Nannochloropsis gaditana

Overview
NameEWM27651.1
Unique Namecds3035
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:554690..554721 +
Alignment locationCM002460.1:554921..556151 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27651.1
Product3-methyladenine dna glycosylase
Orig transcript idgnl|cribi|Naga_100059g22.8056.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:554690..554721 +
CM002460.1supercontigCM002460.1:554921..556151 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0003824catalytic activity
GO:0003905alkylbase DNA N-glycosylase activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0006284base-excision repair
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR011034Formyl_transferase_C-like
IPR003180PurDNA_glycsylse
Homology
BLAST of EWM27651.1 vs. NCBI_GenBank
Match: gi|585109921|gb|EWM27651.1| (3-methyladenine dna glycosylase [Nannochloropsis gaditana])

HSP 1 Score: 861.292 bits (2224), Expect = 0.000e+0
Identity = 420/420 (100.00%), Postives = 420/420 (100.00%), Query Frame = 0
Query:    1 MPVDSFLAVERDCVLQYSTTRTVYPTGTGAVLHFFLSALLLLHVTLVTTSCGKMNNRKMPPIATRAAKAIGASTFISATSARRRRLVSVSAKIDDENGSALMETSTEASSSRPSNPLESSIHVTTSRTPTRRLSENFSSSINSSVETVRAMLRNVSQRVESAVAFEAHHLPVVKCTDTAHHRVSTPKSFEADALITARWLLGARLVRVLPCGTRLSGKIVEVEAYLGPHDKGAHSYGGKRTPRLEPMFAAGGVAYIYHMHACSCLNVIASKEGDPVGVLIRALEPVEGTSIMLQNRLRARALRGKNKTNRGPIPHVADMNASEREKLLAELCAGPGRLCHALAVDHLMSGSDLVGGAQLFLERGEHVPASQLVVSPRIGIEYAGLWKEAPLRFSVLGNRHVSKPWPRAQDKKMRKRKKIS 420
            MPVDSFLAVERDCVLQYSTTRTVYPTGTGAVLHFFLSALLLLHVTLVTTSCGKMNNRKMPPIATRAAKAIGASTFISATSARRRRLVSVSAKIDDENGSALMETSTEASSSRPSNPLESSIHVTTSRTPTRRLSENFSSSINSSVETVRAMLRNVSQRVESAVAFEAHHLPVVKCTDTAHHRVSTPKSFEADALITARWLLGARLVRVLPCGTRLSGKIVEVEAYLGPHDKGAHSYGGKRTPRLEPMFAAGGVAYIYHMHACSCLNVIASKEGDPVGVLIRALEPVEGTSIMLQNRLRARALRGKNKTNRGPIPHVADMNASEREKLLAELCAGPGRLCHALAVDHLMSGSDLVGGAQLFLERGEHVPASQLVVSPRIGIEYAGLWKEAPLRFSVLGNRHVSKPWPRAQDKKMRKRKKIS
Sbjct:    1 MPVDSFLAVERDCVLQYSTTRTVYPTGTGAVLHFFLSALLLLHVTLVTTSCGKMNNRKMPPIATRAAKAIGASTFISATSARRRRLVSVSAKIDDENGSALMETSTEASSSRPSNPLESSIHVTTSRTPTRRLSENFSSSINSSVETVRAMLRNVSQRVESAVAFEAHHLPVVKCTDTAHHRVSTPKSFEADALITARWLLGARLVRVLPCGTRLSGKIVEVEAYLGPHDKGAHSYGGKRTPRLEPMFAAGGVAYIYHMHACSCLNVIASKEGDPVGVLIRALEPVEGTSIMLQNRLRARALRGKNKTNRGPIPHVADMNASEREKLLAELCAGPGRLCHALAVDHLMSGSDLVGGAQLFLERGEHVPASQLVVSPRIGIEYAGLWKEAPLRFSVLGNRHVSKPWPRAQDKKMRKRKKIS 420          
BLAST of EWM27651.1 vs. NCBI_GenBank
Match: gi|908493627|ref|XP_013096279.1| (PREDICTED: probable DNA-3-methyladenine glycosylase [Biomphalaria glabrata] >gi|908493630|ref|XP_013096280.1| PREDICTED: probable DNA-3-methyladenine glycosylase [Biomphalaria glabrata] >gi|908493633|ref|XP_013096281.1| PREDICTED: probable DNA-3-methyladenine glycosylase [Biomphalaria glabrata])

HSP 1 Score: 173.711 bits (439), Expect = 6.058e-48
Identity = 101/224 (45.09%), Postives = 130/224 (58.04%), Query Frame = 0
Query:  189 FEADALITARWLLGARLVRVLPCGTRLSGKIVEVEAYLGPHDKGAHSYGGKRTPRLEPMFAAGGVAYIYHMHAC-SCLNVIASKEGDPVGVLIRALEPVEGTSIMLQNRLRARALRGKNKTNRGPIPHVADMNASEREKLLAELCAGPGRLCHALAVD-HLMSGSDLVGGAQLFLERGEHVPASQLVVSPRIGIEYAGLWKEAPLRFSVLGNRHVSKPWPRAQD 410
            F  +  I A  LLG  LVR +  G R+SGKIVE EAYLG  DK AH+Y GKRT R E MF A G AY+Y+++    CLN+  S +G+   VLIRALEP EG  IM       +  R KN TN            S +E  + EL  GP +LC ALA+  +  +  +L     L+LE+GE +P  ++V SPRI I YA  W+E PLRF +LGN  VSK   +A++
Sbjct:   51 FNVNCEILAHLLLGQNLVRCIG-GQRVSGKIVETEAYLGLEDKAAHTYNGKRTERNEAMFMAPGTAYVYNIYGMYCCLNI--SSQGEGCAVLIRALEPQEGLEIM-------KTHRSKNSTN------------STKELKVKELTNGPSKLCQALAISKNDFNKCNLTNSELLWLEQGETIPDEKIVCSPRINIGYAEEWQEKPLRFYILGNSCVSKRDKKAEE 252          
BLAST of EWM27651.1 vs. NCBI_GenBank
Match: gi|497761851|ref|WP_010076035.1| (DNA-3-methyladenine glycosylase [Clostridium cellulovorans] >gi|302577089|gb|ADL51101.1| DNA-3-methyladenine glycosylase [Clostridium cellulovorans 743B])

HSP 1 Score: 166.777 bits (421), Expect = 7.009e-46
Identity = 91/220 (41.36%), Postives = 125/220 (56.82%), Query Frame = 0
Query:  185 TPKSFEADALITARWLLGARLVRVLPCGTRLSGKIVEVEAYLGPHDKGAHSYGGKRTPRLEPMFAAGGVAYIYHMHAC-SCLNVIASKEGDPVGVLIRALEPVEGTSIMLQNRLRARALRGKNKTNRGPIPHVADMNASEREKLLAELCAGPGRLCHALAVDHLMSGSDLVGGAQLFLERGEHVPASQLVVSPRIGIEYAGLWKEAPLRFSVLGNRHVSK 403
            T + ++ D+LI A  LLG  LV+     T L GKIVEVEAY GP DKGAHSY  +RT R E MF A G +Y+Y ++   +CLN +  KEG P  VLIRA+EP+E  ++M +NR    A                    + +E  +  L  GPG+LC AL +    +  DL+ G ++F+  GE +   Q++  PRIGI+YA  +K+ P RF V  N+ VSK
Sbjct:    6 TREFYDRDSLIVAEELLGKYLVKK-DNNTELIGKIVEVEAYRGPEDKGAHSYNNRRTSRTEVMFGAPGYSYVYLIYGMYNCLNTVCEKEGIPQAVLIRAIEPLEAVNVMFKNRYGREA-------------------ENPKESEIKNLTNGPGKLCKALNITKEHNKLDLL-GEEIFITEGEIIKKEQIIRKPRIGIDYAEEYKDKPWRFYVENNKFVSK 204          
BLAST of EWM27651.1 vs. NCBI_GenBank
Match: gi|851136154|ref|WP_048081485.1| (MULTISPECIES: DNA-3-methyladenine glycosylase [Methanobacterium])

HSP 1 Score: 163.31 bits (412), Expect = 1.503e-44
Identity = 86/226 (38.05%), Postives = 126/226 (55.75%), Query Frame = 0
Query:  189 FEADALITARWLLGARLVRVLPCGTRLSGKIVEVEAYLGPHDKGAHSYGGKRTPRLEPMFAAGGVAYIYHMHACS-CLNVIASKEGDPVGVLIRALEPVEGTSIMLQNRLRARALRGKNKTNRGPIPHVADMNASEREKLLAELCAGPGRLCHALAVDHLMSGSDLVGGAQLFLERGEHVPASQLVVSPRIGIEYAGLWKEAPLRFSVLGNRHVSKPWPRAQDKKM 413
            +E + LI AR LLG  LV + P G    G+IVE EAY+GP DKGAHSYGG+ TPR+ P++  GG AYIY +H  + C+NV+  KEG P  VLIR LEPV+G  +M + R                     D++ + + K L  L  GP +LC A+ ++  ++G DL G       + +     +++ +PR+ I+YA  +++   RF + GN  +SK +     KKM
Sbjct:    8 YERNTLIVARKLLGCVLVHITPEGI-TKGRIVETEAYMGPEDKGAHSYGGRHTPRMNPLYKTGGFAYIYQLHGYNYCINVVTQKEGVPQAVLIRGLEPVKGLELMAKRR-------------------KIDISDNRKSK-LKNLTNGPSKLCQAMKINTSLNGIDLCGDEIFITNQTDLRSNEEIIAAPRVNIDYAEEYRDKLWRFLIKGNAFISKGYKGRNFKKM 212          
BLAST of EWM27651.1 vs. NCBI_GenBank
Match: gi|1084850559|gb|OGQ81693.1| (hypothetical protein A2289_03325 [Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15])

HSP 1 Score: 160.999 bits (406), Expect = 8.465e-44
Identity = 96/222 (43.24%), Postives = 122/222 (54.95%), Query Frame = 0
Query:  185 TPKSFEADALITARWLLGARLVRVLPCGTRLSGKIVEVEAYLGPHDKGAHSYGGKRTPRLEPMFAAGGVAYIYHMHAC-SCLNVIASKEGDPVGVLIRALEPVEGTSIMLQNRLRARALRGKNKTNRGPIPHVADMNASEREKLLAELCAGPGRLCHALAVDHLMSGSDLVGGAQLFLER--GEHVPASQLVVSPRIGIEYAGLWKEAPLRFSVLGNRHVSK 403
            T + +  D +  AR LLG RLVRV   G RLSG IVE EAYLG  D+ AH+  G+RTPR E M+  GG AY+Y  +    C N++ S+  DP  VLIRAL+P EG   M+Q R  AR    K+                       ELC+GP RLC AL +D  + G DLV G  LF+ER     + +  +V   RIG++YAG W    LR+ + GN HVSK
Sbjct:    6 TRRFYRQDPVSVARGLLGMRLVRVTS-GRRLSGVIVETEAYLGTKDQAAHTCQGRRTPRNESMWGDGGHAYVYFTYGMHHCFNIVTSRSEDPCAVLIRALQPDEGREEMVQRRKAAR----KD----------------------TELCSGPARLCQALDIDRRLDGVDLVDGDALFVERIHARSLMSPVIVARRRIGVDYAGAWARRLLRYYLRGNPHVSK 200          
BLAST of EWM27651.1 vs. NCBI_GenBank
Match: gi|503389477|ref|WP_013624138.1| (DNA-3-methyladenine glycosylase [Syntrophobotulus glycolicus] >gi|324964488|gb|ADY55267.1| 3-methyladenine DNA glycosylase [Syntrophobotulus glycolicus DSM 8271])

HSP 1 Score: 160.229 bits (404), Expect = 1.593e-43
Identity = 91/217 (41.94%), Postives = 132/217 (60.83%), Query Frame = 0
Query:  189 FEADALITARWLLGARLVRVLPCGTRLSGKIVEVEAYLGPHDKGAHSYGGKRTPRLEPMFAAGGVAY---IYHMHACSCLNVIASKEGDPVGVLIRALEPVEGTSIMLQNRLRARALRGKNKTNRGPIPHVADMNASEREKLLAELCAGPGRLCHALAVDHLMSGSDLVGGAQLFLERGEHVPASQLVVSPRIGIEYAGLWKEAPLRFSVLGNRHVS 402
            ++ D+LI A+ LLG  LVR    G R++ KIVE EAY+G  D+ AHSYGGKRTPR+E M+   G +Y   IY MH   C N++  + G+P  VL+RA EP++G  IM Q+R         NKT        A +  ++    +  L  GPG+LC AL +D  ++G DL  G++L++E GE+    ++V + R+G++YAG  K+ P RF + GNR+VS
Sbjct:    9 YDRDSLIVAKELLGRVLVRE-AGGQRIAAKIVEAEAYMGIDDQAAHSYGGKRTPRVEVMYGESGFSYVFMIYGMH--YCFNIVTREAGNPQAVLLRAAEPLDGLDIMAQSRF--------NKT-------YAQLTKNQ----IKGLTDGPGKLCKALRIDKNLNGEDLC-GSKLYVEEGEN-EKFRIVSAKRVGVDYAGEAKDYPWRFYIEGNRYVS 201          
BLAST of EWM27651.1 vs. NCBI_GenBank
Match: gi|1120150204|ref|WP_073020298.1| (3-methyladenine DNA glycosylase [Clostridium intestinale] >gi|1110193641|emb|SHI21857.1| DNA-3-methyladenine glycosylase [Clostridium intestinale DSM 6191])

HSP 1 Score: 156.762 bits (395), Expect = 4.502e-42
Identity = 84/217 (38.71%), Postives = 127/217 (58.53%), Query Frame = 0
Query:  189 FEADALITARWLLGARLVRVLPCGTRLSGKIVEVEAYLGPHDKGAHSYGGKRTPRLEPMFAAGGVAYIYHMHAC-SCLNVIASKEGDPVGVLIRALEPVEGTSIMLQNRLRARALRGKNKTNRGPIPHVADMNASEREKLLAELCAGPGRLCHALAVD-HLMSGSDLVGGAQLFLERGEHVPASQLVVSPRIGIEYAGLWKEAPLRFSVLGNRHVSK 403
            F  D LI A+ LLG  +VR +  G RLSGKIVE E Y+G  DK +H+YGGK+TPR+EP++   G++Y++ ++    C NVI+ ++G P G+LIRA+EP++G   + QNR R                    + A E    +  L  GP +LC AL ++  + +  DLV   +L++E G+ + +S +V + R+GI+YA    + P RF V  N +VSK
Sbjct:    8 FARDTLIVAKELLGKVIVREID-GVRLSGKIVETEGYIGSIDKASHAYGGKKTPRVEPLYGEPGISYVFSIYGMYECFNVISKEKGSPEGILIRAVEPIDGLEKIAQNRFRK---------------SYDTLTAKE----IKNLTNGPSKLCIALDINKKVHNFMDLVKSKELYIEDGDIINSSDIVETTRVGIDYAEEAVDFPWRFYVKNNIYVSK 204          
BLAST of EWM27651.1 vs. NCBI_GenBank
Match: gi|1098216575|emb|SFG55141.1| (DNA-3-methyladenine glycosylase [Desulfotomaculum arcticum])

HSP 1 Score: 156.377 bits (394), Expect = 4.848e-42
Identity = 89/217 (41.01%), Postives = 131/217 (60.37%), Query Frame = 0
Query:  187 KSFEADALITARWLLGARLVRVLPCGTRLSGKIVEVEAYLGPHDKGAHSYGGKRTPRLEPMFAAGGVAYIYHMHAC-SCLNVIASKEGDPVGVLIRALEPVEGTSIMLQNRLRARALRGKNKTNRGPIPHVADMNASEREKLLAELCAGPGRLCHALAVDHLMSGSDLVGGAQLFLERGEHVPASQLVVSPRIGIEYAGLWKEAPLRFSVLGNRHVS 402
            K +  D+LI A+ LLG  LVR +  G ++S KIVE EAY+G  DK AHSYGG+RT R+E M+   G AY++ ++    C NV+  +E +P  VLIRA+EP+EG  IM QNR       GK+          + ++ S+    +  L  GPG+LC AL++D  ++G D V G++L++E GE+   S +V + RIG++YA   K+   RF +  N +VS
Sbjct:    7 KFYNRDSLIVAKELLGKLLVREID-GQKISAKIVETEAYMGFRDKAAHSYGGRRTQRVEVMYGGPGFAYVFFVYGMHYCFNVVTREEENPQAVLIRAVEPIEGLDIMAQNRF------GKS---------YSKLSKSQ----MKNLTNGPGKLCRALSIDKNLNGED-VCGSKLYVEEGENEKFS-IVSAKRIGVDYAEEAKDYLWRFYIKDNTYVS 201          
BLAST of EWM27651.1 vs. NCBI_GenBank
Match: gi|291229341|ref|XP_002734634.1| (PREDICTED: DNA-3-methyladenine glycosylase-like [Saccoglossus kowalevskii])

HSP 1 Score: 157.532 bits (397), Expect = 7.485e-42
Identity = 88/216 (40.74%), Postives = 122/216 (56.48%), Query Frame = 0
Query:  189 FEADALITARWLLGARLVRVLPCGTRLSGKIVEVEAYLGPHDKGAHSYGGKRTPRLEPMFAAGGVAYIYHMHAC-SCLNVIASKEGDPVGVLIRALEPVEGTSIMLQNRLRARALRGKNKTNRGPIPHVADMNASEREKLLAELCAGPGRLCHALAVDHL-MSGSDLVGGAQLFLERGEHVPASQLVVSPRIGIEYAGLWKEAPLRFSVLGNRHVS 402
            ++   +  AR LLG  LVR    G RL+GKIVE EAYLG  DKGAHSYGGK+T +   MF   G  Y+Y+++   SC+N+  S +G+   VLIRAL+PV G + M  +R + R    K      P                 ELC GP +LC A+ +D    +  DL    ++++E+G  V AS+++  PRIGI+YA  W   PLRF + GN++VS
Sbjct:   52 YKKSCVDLARDLLGKILVRKTEDGERLAGKIVETEAYLGGEDKGAHSYGGKKTEKNAAMFMDPGTCYVYYVYGLYSCVNI--SSQGEGAAVLIRALDPVNGLAAMHISRSQKRKKESK------PFKD-------------HELCNGPSKLCQAMRIDKKNFNCKDLTTIDEMWVEKGVDVDASEIIECPRIGIDYAKEWATKPLRFYIKGNKNVS 246          
BLAST of EWM27651.1 vs. NCBI_GenBank
Match: gi|1160381826|ref|WP_079426545.1| (3-methyladenine DNA glycosylase [Clostridium oryzae] >gi|1159625247|gb|OPJ59395.1| putative 3-methyladenine DNA glycosylase [Clostridium oryzae])

HSP 1 Score: 155.221 bits (391), Expect = 1.678e-41
Identity = 86/215 (40.00%), Postives = 124/215 (57.67%), Query Frame = 0
Query:  189 FEADALITARWLLGARLVRVLPCGTRLSGKIVEVEAYLGPHDKGAHSYGGKRTPRLEPMFAAGGVAYIYHMHAC-SCLNVIASKEGDPVGVLIRALEPVEGTSIMLQNRLRARALRGKNKTNRGPIPHVADMNASEREKLLAELCAGPGRLCHALAVDHLMSGSDLVGGAQLFLERGEHVPASQLVVSPRIGIEYAGLWKEAPLRFSVLGNRHVS 402
            +  D +I A+ LLG  LV  +    R+S KIVE EAY+G +DK AHSYGG+RT R+E M+   G +Y++ ++   +C NV+  +EG+P  VLIRA EPVEG  IM +NR +       N+  +  I                 L  GPG+LC AL +D  ++G DL G  +L+LE GE+     ++ S R+GI+YA   K+ P RF +  N++VS
Sbjct:    9 YNRDTVIVAKELLGKVLVHEVNS-QRISAKIVEAEAYMGVNDKAAHSYGGRRTARVEAMYGKPGTSYVFIIYGMYNCFNVVTREEGNPQAVLIRAAEPVEGLDIMAENRFKETY----NQLTKSQIKG---------------LTNGPGKLCGALLIDRSLNGEDLCGN-KLYLEEGEN-EKFNIISSKRVGIDYAEEAKDYPWRFYIENNKYVS 201          
The following BLAST results are available for this feature:
BLAST of EWM27651.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109921|gb|EWM27651.1|0.000e+0100.003-methyladenine dna glycosylase [Nannochloropsis g... [more]
gi|908493627|ref|XP_013096279.1|6.058e-4845.09PREDICTED: probable DNA-3-methyladenine glycosylas... [more]
gi|497761851|ref|WP_010076035.1|7.009e-4641.36DNA-3-methyladenine glycosylase [Clostridium cellu... [more]
gi|851136154|ref|WP_048081485.1|1.503e-4438.05MULTISPECIES: DNA-3-methyladenine glycosylase [Met... [more]
gi|1084850559|gb|OGQ81693.1|8.465e-4443.24hypothetical protein A2289_03325 [Deltaproteobacte... [more]
gi|503389477|ref|WP_013624138.1|1.593e-4341.94DNA-3-methyladenine glycosylase [Syntrophobotulus ... [more]
gi|1120150204|ref|WP_073020298.1|4.502e-4238.713-methyladenine DNA glycosylase [Clostridium intes... [more]
gi|1098216575|emb|SFG55141.1|4.848e-4241.01DNA-3-methyladenine glycosylase [Desulfotomaculum ... [more]
gi|291229341|ref|XP_002734634.1|7.485e-4240.74PREDICTED: DNA-3-methyladenine glycosylase-like [S... [more]
gi|1160381826|ref|WP_079426545.1|1.678e-4140.003-methyladenine DNA glycosylase [Clostridium oryza... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3043rna3043Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications