rna3042, rna3042 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3042
Unique Name	rna3042
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	991
Alignment location	CM002460.1:552869..555027 -

Link to JBrowse

Properties


Property Name	Value
Product	gtp-binding protein
Orig transcript id	gnl\|cribi\|Naga_100059g21.8041.mrna
Orig protein id	gnl\|cribi\|Naga_100059g21.8041
Gene	PDE318
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:552869..555027 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
PDE318	gene2920	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3042	rna3042-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27636.1	cds3034	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:552869..555027-
coding sequence from alignment at CM002460.1:552869..555027-

mRNA sequence

>rna3042 ID=rna3042|Name=rna3042|organism=Nannochloropsis gaditana|type=mRNA|length=991bp
GGGATAGCAACAAAGGAAAACAGATCACTACAACCTTAAGCGATGCATGA
AAGGGCCCTTAACATCTTGTAAGGGACCCCACATGGCACGTATCCCCCCG
CGGCAAGCTGCCCGACAGCATTTCTCACAAATTTGGCGGCAGGAAAGTGC
GTGGAGATGCTCCCAACGGACGTCGCCAGTGGCGCCATGGACGGCGAGAT
TGCCGCAAGCGGCGTGAAAGGGCCTCTGACAGGAAGGATAGGTGCGATTT
GCACGCAGACTTGGCTGGGATAGTCCATTCATTGGGTTCCTGGCACTCTT
TGGTGCTACTCACTGCTTGCTGGTCTCTCGAAGTTTTAAAGCTGCCACAT
GCGCCCACCGTACATCCTTCCTTGTGTGTTGATACAACTACCTCCTCCTT
CGCAAAGTGCAGCATGCACAATTCAAGAACTCTACCATGGCAGATACATC
ACCATCGATATGAGCTTCCTGATGATGAAACGCGCTTTACTTTGGAGCTC
GAGTTTGTGCAGTGCCTGGCGAACGCAGATTACTTGCACTGGCTGGCGCT
CAACAGGTACCTGGAGGACCCTGCCTTTTTGGCTTTTTTGCGGTATCTAC
ACTACTGGCGACAGCCAAAATATGCGAGATTTCTAGTCTATCCCCAAGCA
TTAGCCATGCTGGAATTATTGGGTCGAGCAGAGGTGCGGCGCGAGCTGGG
TCGTGGGCAGTACAAAGAGTTCTTGCGGGAGCAACAACTGCTACATTGGC
GATTTTACTTTAATAATCGGCAACGACGGCTCGTGGTCAACCCCCCCAAC
GCATCGAAAGAAACACTGAAAGCCGGTGGTACATGGACGACGGTGCTGAA
TGAGCGACCAGTCCAGGCTGAGCCTGAAGCAGAGCAGTTAAAATTAGGGT
CTGGGAATGGGGAAGGAAGAGATGTAACGGAGGTGAAGTTGGTCGAGGGA
GGTATGCAGAATACAACAACATGAAGCTGACACCTCAGACA

protein sequence of rna3042

>rna3042-protein ID=rna3042-protein|Name=rna3042|organism=Nannochloropsis gaditana|type=polypeptide|length=522bp
MEHGRHNSRSLLCRLMPCPRHLAYRPIPGTALALAVMVSLLTLGSCTPAK
VIITKRYASVWVSRASSLSAPPRLPLPLFIISRYTSQHQKPPPQHPLRKA
ALPSIRARYSQRPATPTVLEANLTLGASPNQTAEVNPSSPSASPLKRARP
RRTVTGGLKNLPVTPPANELLNRAVRLSKWLKVDEEKIKNQRQRARKLGA
LKLDTLTKSISKPLRDVLKAYDYELAVLHPFEATLADLTVRARAKQGHQS
LPEVLKAVNELRKSVLETGKRHAAAAKNATSKQEAIEATEAGFREVESLM
LEGADVVLDLIDVQKALRKIPIVQLGMPTVVLVGAPNVGKSSIVRAISTG
TPEVNNYPFTTRGMTLGHLQYEDWVEGQCQVMDTPGVLNRPDEERNEMES
LTLASMLHLPTAVMFVLDLTGNSGALSSIENQIQIRNGLRARFPKRPWVD
VISKADLPMDQEDPAVARAPAGALKVSVADGTGLAEVEARVKEMLLDVRE
VLSAIGLAEGPGGRVEGEGSGG

mRNA from alignment at CM002460.1:552869..555027-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3042 ID=rna3042|Name=rna3042|organism=Nannochloropsis gaditana|type=mRNA|length=2159bp|location=Sequence derived from alignment at CM002460.1:552869..555027- (Nannochloropsis gaditana)
CCAGTGTCACATGGAGAAGGAGGAGAGCTGACAGGAAAAAATGCAAAACG
GCCCCCGTTCCAGTAGGGTAGACGGTCCTCGTTGTCGAGTACTGCAGCAC
ACAGTCCCTGTTGTAATTTAAATATATATTGGAAGGGTGTGGACAGGTGA
GGGAGCATAACATCTAGGTCGAAATGCGCCCGGGAGGGAGGCAGATACAT
GACTTGCTGAAGCGGCGGCTGGGAAACAACCCTTTATCTGTGGCCCACAA
ATCTACAACTTCCCTGTCCCTTCGCTCACAAACGCTTCACTTTTGAAATT
TTATACCTTTCTACAGCCAGGAAGCTGTCGACTGGCATATGTTGGGCGGT
GCCTGATGGAGCACGGCAGACACAATTCACGGTCTCTGCTTTGCCGGTTG
ATGCCCTGTCCCCGCCACCTTGCATATCGACCAATTCCTGGCACCGCTTT
GGCATTGGCCGTTATGGTGTCCCTCTTGACTCTGGGTAGCTGCACACCTG
CCAAGGTTATCATTACGAAAAGATACGCGTCCGTATGGGTCTCAAGGGCC
TCCAGCCTTTCTGCCCCCCCCCGCCTGCCACTACCTCTCTTCATAATATC
CCGGTATACTTCCCAGCACCAGAAACCGCCGCCCCAGCATCCTCTCCGCA
AGGCAGCACTCCCTTCCATTCGTGCCAGATACAGTCAGCGGCCAGCAACG
CCTACAGTCTTAGAAGCAAATCTGACCCTGGGCGCCTCTCCAAATCAGAC
GGCCGAAGTAAACCCCTCTTCCCCAAGTGCATCCCCTCTTAAACGCGCTC
GGCCCCGGCGGACGGTCACTGGAGGCTTAAAGAATTTACCTGTGACCCCG
CCTGCCAATGAGCTACTGAATCGGGCTGTGCGGCTATCCAAGTGGTTAAA
GGTAGGTGTCCGCGGATGACGGGAGGTAATGTCGGCTCCAGGGGATCGGT
CGAGCGTGGGCGGAAGCATGATGATGAATTGTTGCACGCCGTGTACGTGC
GTGCTCAATGAAATAATTGGCTCTGTGCGTGGCATTTGTCTTCATATGCT
TTTGAATTTACTGCCTCTGCCACCCATAGGTGGACGAAGAAAAAATCAAA
AACCAACGCCAGCGCGCGCGCAAGTTGGGCGCCTTGAAACTCGACACGCT
GACCAAGAGCATCTCCAAACCCCTGAGGGACGTGCTTAAAGCCTACGACT
ACGAGCTGGCCGTCCTCCACCCCTTCGAGGCGACCCTGGCGGACTTGACT
GTCCGAGCCCGGGCCAAGCAGGGGCACCAGAGCCTGCCCGAGGTCCTGAA
GGCCGTCAACGAATTGCGCAAGTCGGTCCTCGAAACGGGGAAAAGGCACG
CGGCGGCAGCCAAGAACGCCACGTCCAAGCAAGAGGCCATCGAGGCCACA
GAGGCGGGCTTTCGGGAGGTGGAGTCTTTGATGCTGGAGGGCGCTGATGT
GGTCTTGGATTTGATCGACGTCCAGAAGGCGTTGCGTAAAATTCCCATCG
TGCAGTTGGGCATGCCCACGGTCGTGCTGGTCGGGGCGCCGAACGTGGGG
AAGAGCTCCATCGTCCGGGCCATTTCCACGGGGACCCCGGAAGTGAACAA
CTACCCTTTCACCACGCGCGGGATGACGCTCGGACACCTCCAGTACGAGG
ACTGGGTGGAGGGGCAGTGCCAGGTGATGGACACGCCAGGGGTCCTGAAT
CGGCCGGATGAGGAGCGCAACGAGATGGAGTCCCTGACGCTCGCCTCCAT
GCTCCACCTGCCCACCGCCGTTATGTTCGTCCTGGATCTGACGGGCAATT
CTGGGGCACTCTCGAGCATCGAGAATCAGATTCAGATTCGAAACGGCCTG
CGCGCGCGTTTCCCTAAGCGACCCTGGGTGGACGTGATCAGCAAAGCCGA
CTTGCCCATGGACCAAGAGGACCCGGCCGTAGCCCGTGCCCCTGCAGGGG
CCTTAAAGGTGTCTGTGGCGGATGGTACAGGCTTAGCGGAAGTGGAAGCA
CGGGTGAAGGAAATGCTTCTAGACGTGCGGGAAGTCTTGTCAGCGATAGG
GTTGGCAGAGGGGCCGGGAGGGCGTGTGGAAGGGGAAGGAAGTGGCGGGT
AAAGTGAAAGGGCATTGTAATCAAAATACGCACAAAAGTACCGCGCAAAG
TAGAGGACA

Coding sequence (CDS) from alignment at CM002460.1:552869..555027-

>rna3042 ID=rna3042|Name=rna3042|organism=Nannochloropsis gaditana|type=CDS|length=3138bp|location=Sequence derived from alignment at CM002460.1:552869..555027- (Nannochloropsis gaditana)
GTGGACGAAGAAAAAATCAAAAACCAACGCCAGCGCGCGCGCAAGTTGGG
CGCCTTGAAACTCGACACGCTGACCAAGAGCATCTCCAAACCCCTGAGGG
ACGTGCTTAAAGCCTACGACTACGAGCTGGCCGTCCTCCACCCCTTCGAG
GCGACCCTGGCGGACTTGACTGTCCGAGCCCGGGCCAAGCAGGGGCACCA
GAGCCTGCCCGAGGTCCTGAAGGCCGTCAACGAATTGCGCAAGTCGGTCC
TCGAAACGGGGAAAAGGCACGCGGCGGCAGCCAAGAACGCCACGTCCAAG
CAAGAGGCCATCGAGGCCACAGAGGCGGGCTTTCGGGAGGTGGAGTCTTT
GATGCTGGAGGGCGCTGATGTGGTCTTGGATTTGATCGACGTCCAGAAGG
CGTTGCGTAAAATTCCCATCGTGCAGTTGGGCATGCCCACGGTCGTGCTG
GTCGGGGCGCCGAACGTGGGGAAGAGCTCCATCGTCCGGGCCATTTCCAC
GGGGACCCCGGAAGTGAACAACTACCCTTTCACCACGCGCGGGATGACGC
TCGGACACCTCCAGTACGAGGACTGGGTGGAGGGGCAGTGCCAGGTGATG
GACACGCCAGGGGTCCTGAATCGGCCGGATGAGGAGCGCAACGAGATGGA
GTCCCTGACGCTCGCCTCCATGCTCCACCTGCCCACCGCCGTTATGTTCG
TCCTGGATCTGACGGGCAATTCTGGGGCACTCTCGAGCATCGAGAATCAG
ATTCAGATTCGAAACGGCCTGCGCGCGCGTTTCCCTAAGCGACCCTGGGT
GGACGTGATCAGCAAAGCCGACTTGCCCATGGACCAAGAGGACCCGGCCG
TAGCCCGTGCCCCTGCAGGGGCCTTAAAGGTGTCTGTGGCGGATGGTACA
GGCTTAGCGGAAGTGGAAGCACGGGTGAAGGAAATGCTTCTAGACGTGCG
GGAAGTCTTGTCAGCGATAGGGTTGGCAGAGGGGCCGGGAGGGCGTGTGG
AAGGGGAAGGAAGTGGCGGGTAAATGGAGCACGGCAGACACAATTCACGG
TCTCTGCTTTGCCGGTTGATGCCCTGTCCCCGCCACCTTGCATATCGACC
AATTCCTGGCACCGCTTTGGCATTGGCCGTTATGGTGTCCCTCTTGACTC
TGGGTAGCTGCACACCTGCCAAGGTTATCATTACGAAAAGATACGCGTCC
GTATGGGTCTCAAGGGCCTCCAGCCTTTCTGCCCCCCCCCGCCTGCCACT
ACCTCTCTTCATAATATCCCGGTATACTTCCCAGCACCAGAAACCGCCGC
CCCAGCATCCTCTCCGCAAGGCAGCACTCCCTTCCATTCGTGCCAGATAC
AGTCAGCGGCCAGCAACGCCTACAGTCTTAGAAGCAAATCTGACCCTGGG
CGCCTCTCCAAATCAGACGGCCGAAGTAAACCCCTCTTCCCCAAGTGCAT
CCCCTCTTAAACGCGCTCGGCCCCGGCGGACGGTCACTGGAGGCTTAAAG
AATTTACCTGTGACCCCGCCTGCCAATGAGCTACTGAATCGGGCTGTGCG
GCTATCCAAGTGGTTAAAGGTGGACGAAGAAAAAATCAAAAACCAACGCC
AGCGCGCGCGCAAGTTGGGCGCCTTGAAACTCGACACGCTGACCAAGAGC
ATCTCCAAACCCCTGAGGGACGTGCTTAAAGCCTACGACTACGAGCTGGC
CGTCCTCCACCCCTTCGAGGCGACCCTGGCGGACTTGACTGTCCGAGCCC
GGGCCAAGCAGGGGCACCAGAGCCTGCCCGAGGTCCTGAAGGCCGTCAAC
GAATTGCGCAAGTCGGTCCTCGAAACGGGGAAAAGGCACGCGGCGGCAGC
CAAGAACGCCACGTCCAAGCAAGAGGCCATCGAGGCCACAGAGGCGGGCT
TTCGGGAGGTGGAGTCTTTGATGCTGGAGGGCGCTGATGTGGTCTTGGAT
TTGATCGACGTCCAGAAGGCGTTGCGTAAAATTCCCATCGTGCAGTTGGG
CATGCCCACGGTCGTGCTGGTCGGGGCGCCGAACGTGGGGAAGAGCTCCA
TCGTCCGGGCCATTTCCACGGGGACCCCGGAAGTGAACAACTACCCTTTC
ACCACGCGCGGGATGACGCTCGGACACCTCCAGTACGAGGACTGGGTGGA
GGGGCAGTGCCAGGTGATGGACACGCCAGGGGTCCTGAATCGGCCGGATG
AGGAGCGCAACGAGATGGAGTCCCTGACGCTCGCCTCCATGCTCCACCTG
CCCACCGCCGTTATGTTCGTCCTGGATCTGACGGGCAATTCTGGGGCACT
CTCGAGCATCGAGAATCAGATTCAGATTCGAAACGGCCTGCGCGCGCGTT
TCCCTAAGCGACCCTGGGTGGACGTGATCAGCAAAGCCGACTTGCCCATG
GACCAAGAGGACCCGGCCGTAGCCCGTGCCCCTGCAGGGGCCTTAAAGGT
GTCTGTGGCGGATGGTACAGGCTTAGCGGAAGTGGAAGCACGGGTGAAGG
AAATGCTTCTAGACGTGCGGGAAGTCTTGTCAGCGATAGGGTTGGCAGAG
GGGCCGGGAGGGCGTGTGGAAGGGGAAGGAAGTGGCGGGTAAATGGAGCA
CGGCAGACACAATTCACGGTCTCTGCTTTGCCGGTTGATGCCCTGTCCCC
GCCACCTTGCATATCGACCAATTCCTGGCACCGCTTTGGCATTGGCCGTT
ATGGTGTCCCTCTTGACTCTGGGTAGCTGCACACCTGCCAAGGTTATCAT
TACGAAAAGATACGCGTCCGTATGGGTCTCAAGGGCCTCCAGCCTTTCTG
CCCCCCCCCGCCTGCCACTACCTCTCTTCATAATATCCCGGTATACTTCC
CAGCACCAGAAACCGCCGCCCCAGCATCCTCTCCGCAAGGCAGCACTCCC
TTCCATTCGTGCCAGATACAGTCAGCGGCCAGCAACGCCTACAGTCTTAG
AAGCAAATCTGACCCTGGGCGCCTCTCCAAATCAGACGGCCGAAGTAAAC
CCCTCTTCCCCAAGTGCATCCCCTCTTAAACGCGCTCGGCCCCGGCGGAC
GGTCACTGGAGGCTTAAAGAATTTACCTGTGACCCCGCCTGCCAATGAGC
TACTGAATCGGGCTGTGCGGCTATCCAAGTGGTTAAAG

Synonyms

Publications