rna3038, rna3038 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3038
Unique Name	rna3038
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	618
Alignment location	CM002460.1:541336..543057 -

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Properties


Property Name	Value
Product	FIST C domain protein
Orig transcript id	gnl\|cribi\|Naga_100059g17.8055.mrna
Orig protein id	gnl\|cribi\|Naga_100059g17.8055
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:541336..543057 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100059g17	gene2916	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27650.1	cds3030	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3038	rna3038-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:541336..543057-
coding sequence from alignment at CM002460.1:541336..543057-

mRNA sequence

>rna3038 ID=rna3038|Name=rna3038|organism=Nannochloropsis gaditana|type=mRNA|length=618bp
ATGGAGGGTCAGAGTACGGGAGTTGTAGATTGCTTGTGCACATGCCGAGG
GGTGACTCAGGAAATTAAGAGGGAAGTGGTTTCCTTTATCCTAGAAATTA
ATATTATGACGGTCAAGCGCCGCAACCACGGGCGTAACAAGAAGGGTCGT
GGCCACGTGAAGCGTGTACGATGTGCGAGCACAGGGAAGGCGGTCCCGAA
GGACAAGGCCATCAAACGCATGGTAGTGCGTTCCATTGTAGACCAATCCT
CTGCTCGTGACATTAAAGAGGCGCGTGTGTTCGAGAACTACCAATTGCCC
AAGCTGTACATCAAGCAGTACTACTCCGTGGAGGCGGCTGTGCATCAACG
TCTGGTCCGCTCGCGCAGCAAGGAGGACCGCCGATTTGCAGGACGCGTGT
GCGAGCAGCAGGAGCTAGACGCTTATTGCCGCGCCTTGCGGAACTCTGAC
AGCACTTTTCCTTGTAAAGCAGCAGTTTTTTCATCGCATCCTGCGGGATC
GCGGAGGAAGATGTGTGAAAGGCAAGAGACGTCTGGTCTGTCATGGCTCG
TCACGCATTCGTTAGTGAGTGAAGCCGCGGCGGGCGCCTGTCCAGTCCAT
CCGATGGGGGCAGATTAA

protein sequence of rna3038

>rna3038-protein ID=rna3038-protein|Name=rna3038|organism=Nannochloropsis gaditana|type=polypeptide|length=573bp
MPATSTFSSDPLPSFFTPVSTEVLLEIVSFSDLETLCQLRATSRLWTVLV
AEYEQANPSFTALVEPMPALPAQAKRLCRATPSVGFLFNQMRSSPTEVAQ
MLSHLPPRCQVIGGDSQYPFTGADKRIVQGNTYAQDAILNLLSLPEACAQ
TFTVQNSDLEAVTVAPCEREGRRWLREDILGLSPSIEYKVMVVLPGQRAD
NVELLLKALQEGSPSAAIVGGIFARNLFCWKDGALRRPGGEGGNAEDGIV
GMALWGNVPLQAVVSRGVVPCSPSFTVSSWEYEGEAVVVKSLSRPASGDA
RLDSAPDVVVNPLVAFEHAQRNGDIYVGLQIEDSAVPVNGGVDGGGAGHD
SGVPGSAFKSRPPPYELLSFVFAVDEGAPVLLLSFVNKLQGGPPPNARLT
VKFFDLKTQSAQAHVQKKMRAVAEELRRNGQDVLGALLFSCNGRGPRRFL
DARSTHVDASAFTAEFPGRQVGGMYAMGEIGPQATYVDEEEEDDEIAGTD
AGMVVKNGKGLGAGGSQILRNSQSGSCALQGFTAVFALLVAPRRSSQSSH
LLDILNKDGLSAAIRLVLGPGAK

mRNA from alignment at CM002460.1:541336..543057-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3038 ID=rna3038|Name=rna3038|organism=Nannochloropsis gaditana|type=mRNA|length=1722bp|location=Sequence derived from alignment at CM002460.1:541336..543057- (Nannochloropsis gaditana)
ATGCCTGCCACGTCAACATTCTCGTCGGACCCTTTGCCGTCCTTCTTCAC
TCCTGTTTCAACCGAAGTCTTGCTCGAAATTGTGTCATTTTCTGACCTTG
AGACTTTGTGTCAGCTTCGAGCAACGTCGAGGCTGTGGACTGTGTTAGTT
GCCGAGTATGAGCAAGCCAATCCGTCCTTCACTGCTCTAGTTGAACCGAT
GCCGGCGCTCCCTGCTCAAGCTAAGCGTCTTTGTAGAGCAACTCCTTCCG
TCGGTTTTCTTTTCAATCAGATGCGTTCTTCACCTACAGAAGTTGCCCAA
ATGCTGTCTCACTTGCCGCCGCGCTGCCAAGTTATCGGCGGCGACAGTCA
ATATCCTTTTACAGGAGCAGACAAGAGAATTGTACAAGGAAACACTTACG
CGCAAGATGCGATTTTGAACCTTCTTTCCCTACCTGAAGCGTGTGCTCAG
ACATTTACAGTTCAGAATAGTGATCTTGAAGCTGTAACTGTCGCCCCCTG
CGAGCGGGAGGGGCGACGCTGGCTACGTGAGGATATTCTGGGGTTGAGTC
CTTCGATTGAGTACAAAGTGATGGTGGTTTTGCCCGGACAGCGCGCTGAC
AACGTCGAGCTCCTTTTGAAAGCTCTTCAAGAGGGATCTCCCTCCGCAGC
CATTGTTGGGGGCATCTTTGCGCGAAATCTCTTTTGCTGGAAGGACGGCG
CCTTGCGAAGGCCGGGAGGGGAGGGAGGGAACGCTGAGGACGGTATCGTG
GGCATGGCTCTCTGGGGCAACGTGCCCCTGCAAGCCGTCGTTTCACGAGG
AGTTGTGCCATGCTCGCCGTCCTTCACCGTCTCCAGCTGGGAGTACGAGG
GAGAAGCTGTCGTGGTGAAGAGCCTTTCACGTCCAGCGTCCGGTGACGCG
CGCTTGGACTCCGCCCCCGACGTGGTGGTCAATCCCTTGGTGGCCTTTGA
GCACGCTCAGCGCAACGGAGATATCTACGTAGGATTACAAATCGAGGATT
CCGCGGTGCCAGTGAATGGTGGAGTCGATGGAGGGGGGGCGGGGCACGAC
TCAGGGGTACCAGGGTCGGCGTTTAAGTCCCGCCCCCCCCCCTACGAACT
GCTCTCGTTCGTTTTCGCAGTGGACGAGGGCGCCCCTGTCCTCCTTTTGT
CTTTCGTGAACAAACTGCAGGGTGGACCACCGCCCAACGCGCGGCTGACT
GTCAAATTCTTCGATTTGAAGACGCAGAGCGCCCAGGCCCACGTCCAGAA
GAAAATGCGGGCGGTGGCGGAAGAGCTTCGGCGCAACGGGCAAGACGTCC
TCGGGGCCCTCCTCTTCTCTTGCAACGGTCGAGGCCCCCGCCGCTTTCTG
GATGCGAGGAGCACGCACGTGGATGCCTCCGCGTTCACGGCGGAATTCCC
AGGAAGGCAAGTGGGGGGGATGTACGCAATGGGTGAGATTGGCCCGCAAG
CTACATACGTGGATGAGGAGGAGGAGGACGACGAAATAGCGGGAACAGAT
GCTGGTATGGTTGTTAAAAATGGAAAGGGTTTGGGGGCGGGGGGCTCGCA
GATTCTACGCAATAGTCAGTCTGGGTCATGCGCGCTGCAGGGCTTTACGG
CCGTTTTTGCCTTGTTGGTCGCGCCAAGGAGGTCGTCTCAGTCGTCGCAT
TTGCTCGACATTCTCAACAAAGATGGTCTGAGTGCCGCAATACGCCTTGT
GCTGGGTCCTGGTGCCAAATGA

Coding sequence (CDS) from alignment at CM002460.1:541336..543057-

>rna3038 ID=rna3038|Name=rna3038|organism=Nannochloropsis gaditana|type=CDS|length=1722bp|location=Sequence derived from alignment at CM002460.1:541336..543057- (Nannochloropsis gaditana)
ATGCCTGCCACGTCAACATTCTCGTCGGACCCTTTGCCGTCCTTCTTCAC
TCCTGTTTCAACCGAAGTCTTGCTCGAAATTGTGTCATTTTCTGACCTTG
AGACTTTGTGTCAGCTTCGAGCAACGTCGAGGCTGTGGACTGTGTTAGTT
GCCGAGTATGAGCAAGCCAATCCGTCCTTCACTGCTCTAGTTGAACCGAT
GCCGGCGCTCCCTGCTCAAGCTAAGCGTCTTTGTAGAGCAACTCCTTCCG
TCGGTTTTCTTTTCAATCAGATGCGTTCTTCACCTACAGAAGTTGCCCAA
ATGCTGTCTCACTTGCCGCCGCGCTGCCAAGTTATCGGCGGCGACAGTCA
ATATCCTTTTACAGGAGCAGACAAGAGAATTGTACAAGGAAACACTTACG
CGCAAGATGCGATTTTGAACCTTCTTTCCCTACCTGAAGCGTGTGCTCAG
ACATTTACAGTTCAGAATAGTGATCTTGAAGCTGTAACTGTCGCCCCCTG
CGAGCGGGAGGGGCGACGCTGGCTACGTGAGGATATTCTGGGGTTGAGTC
CTTCGATTGAGTACAAAGTGATGGTGGTTTTGCCCGGACAGCGCGCTGAC
AACGTCGAGCTCCTTTTGAAAGCTCTTCAAGAGGGATCTCCCTCCGCAGC
CATTGTTGGGGGCATCTTTGCGCGAAATCTCTTTTGCTGGAAGGACGGCG
CCTTGCGAAGGCCGGGAGGGGAGGGAGGGAACGCTGAGGACGGTATCGTG
GGCATGGCTCTCTGGGGCAACGTGCCCCTGCAAGCCGTCGTTTCACGAGG
AGTTGTGCCATGCTCGCCGTCCTTCACCGTCTCCAGCTGGGAGTACGAGG
GAGAAGCTGTCGTGGTGAAGAGCCTTTCACGTCCAGCGTCCGGTGACGCG
CGCTTGGACTCCGCCCCCGACGTGGTGGTCAATCCCTTGGTGGCCTTTGA
GCACGCTCAGCGCAACGGAGATATCTACGTAGGATTACAAATCGAGGATT
CCGCGGTGCCAGTGAATGGTGGAGTCGATGGAGGGGGGGCGGGGCACGAC
TCAGGGGTACCAGGGTCGGCGTTTAAGTCCCGCCCCCCCCCCTACGAACT
GCTCTCGTTCGTTTTCGCAGTGGACGAGGGCGCCCCTGTCCTCCTTTTGT
CTTTCGTGAACAAACTGCAGGGTGGACCACCGCCCAACGCGCGGCTGACT
GTCAAATTCTTCGATTTGAAGACGCAGAGCGCCCAGGCCCACGTCCAGAA
GAAAATGCGGGCGGTGGCGGAAGAGCTTCGGCGCAACGGGCAAGACGTCC
TCGGGGCCCTCCTCTTCTCTTGCAACGGTCGAGGCCCCCGCCGCTTTCTG
GATGCGAGGAGCACGCACGTGGATGCCTCCGCGTTCACGGCGGAATTCCC
AGGAAGGCAAGTGGGGGGGATGTACGCAATGGGTGAGATTGGCCCGCAAG
CTACATACGTGGATGAGGAGGAGGAGGACGACGAAATAGCGGGAACAGAT
GCTGGTATGGTTGTTAAAAATGGAAAGGGTTTGGGGGCGGGGGGCTCGCA
GATTCTACGCAATAGTCAGTCTGGGTCATGCGCGCTGCAGGGCTTTACGG
CCGTTTTTGCCTTGTTGGTCGCGCCAAGGAGGTCGTCTCAGTCGTCGCAT
TTGCTCGACATTCTCAACAAAGATGGTCTGAGTGCCGCAATACGCCTTGT
GCTGGGTCCTGGTGCCAAATGA

Synonyms

Publications