EWM27650.1, cds3030 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27650.1 vs. NCBI_GenBank
Match: gi|585109920|gb|EWM27650.1| (FIST C domain protein [Nannochloropsis gaditana]) HSP 1 Score: 1163.29 bits (3008), Expect = 0.000e+0 Identity = 573/573 (100.00%), Postives = 573/573 (100.00%), Query Frame = 0
Query: 1 MPATSTFSSDPLPSFFTPVSTEVLLEIVSFSDLETLCQLRATSRLWTVLVAEYEQANPSFTALVEPMPALPAQAKRLCRATPSVGFLFNQMRSSPTEVAQMLSHLPPRCQVIGGDSQYPFTGADKRIVQGNTYAQDAILNLLSLPEACAQTFTVQNSDLEAVTVAPCEREGRRWLREDILGLSPSIEYKVMVVLPGQRADNVELLLKALQEGSPSAAIVGGIFARNLFCWKDGALRRPGGEGGNAEDGIVGMALWGNVPLQAVVSRGVVPCSPSFTVSSWEYEGEAVVVKSLSRPASGDARLDSAPDVVVNPLVAFEHAQRNGDIYVGLQIEDSAVPVNGGVDGGGAGHDSGVPGSAFKSRPPPYELLSFVFAVDEGAPVLLLSFVNKLQGGPPPNARLTVKFFDLKTQSAQAHVQKKMRAVAEELRRNGQDVLGALLFSCNGRGPRRFLDARSTHVDASAFTAEFPGRQVGGMYAMGEIGPQATYVDEEEEDDEIAGTDAGMVVKNGKGLGAGGSQILRNSQSGSCALQGFTAVFALLVAPRRSSQSSHLLDILNKDGLSAAIRLVLGPGAK 573
MPATSTFSSDPLPSFFTPVSTEVLLEIVSFSDLETLCQLRATSRLWTVLVAEYEQANPSFTALVEPMPALPAQAKRLCRATPSVGFLFNQMRSSPTEVAQMLSHLPPRCQVIGGDSQYPFTGADKRIVQGNTYAQDAILNLLSLPEACAQTFTVQNSDLEAVTVAPCEREGRRWLREDILGLSPSIEYKVMVVLPGQRADNVELLLKALQEGSPSAAIVGGIFARNLFCWKDGALRRPGGEGGNAEDGIVGMALWGNVPLQAVVSRGVVPCSPSFTVSSWEYEGEAVVVKSLSRPASGDARLDSAPDVVVNPLVAFEHAQRNGDIYVGLQIEDSAVPVNGGVDGGGAGHDSGVPGSAFKSRPPPYELLSFVFAVDEGAPVLLLSFVNKLQGGPPPNARLTVKFFDLKTQSAQAHVQKKMRAVAEELRRNGQDVLGALLFSCNGRGPRRFLDARSTHVDASAFTAEFPGRQVGGMYAMGEIGPQATYVDEEEEDDEIAGTDAGMVVKNGKGLGAGGSQILRNSQSGSCALQGFTAVFALLVAPRRSSQSSHLLDILNKDGLSAAIRLVLGPGAK
Sbjct: 1 MPATSTFSSDPLPSFFTPVSTEVLLEIVSFSDLETLCQLRATSRLWTVLVAEYEQANPSFTALVEPMPALPAQAKRLCRATPSVGFLFNQMRSSPTEVAQMLSHLPPRCQVIGGDSQYPFTGADKRIVQGNTYAQDAILNLLSLPEACAQTFTVQNSDLEAVTVAPCEREGRRWLREDILGLSPSIEYKVMVVLPGQRADNVELLLKALQEGSPSAAIVGGIFARNLFCWKDGALRRPGGEGGNAEDGIVGMALWGNVPLQAVVSRGVVPCSPSFTVSSWEYEGEAVVVKSLSRPASGDARLDSAPDVVVNPLVAFEHAQRNGDIYVGLQIEDSAVPVNGGVDGGGAGHDSGVPGSAFKSRPPPYELLSFVFAVDEGAPVLLLSFVNKLQGGPPPNARLTVKFFDLKTQSAQAHVQKKMRAVAEELRRNGQDVLGALLFSCNGRGPRRFLDARSTHVDASAFTAEFPGRQVGGMYAMGEIGPQATYVDEEEEDDEIAGTDAGMVVKNGKGLGAGGSQILRNSQSGSCALQGFTAVFALLVAPRRSSQSSHLLDILNKDGLSAAIRLVLGPGAK 573
BLAST of EWM27650.1 vs. NCBI_GenBank
Match: gi|553196002|ref|XP_005856246.1| (hypothetical protein NGA_2055400, partial [Nannochloropsis gaditana CCMP526] >gi|422292811|gb|EKU20113.1| hypothetical protein NGA_2055400, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 367.081 bits (941), Expect = 2.080e-122 Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0
Query: 394 PPNARLTVKFFDLKTQSAQAHVQKKMRAVAEELRRNGQDVLGALLFSCNGRGPRRFLDARSTHVDASAFTAEFPGRQVGGMYAMGEIGPQATYVDEEEEDDEIAGTDAGMVVKNGKGLGAGGSQILRNSQSGSCALQGFTAVFALLVAPRRSSQSSHLLDILNKDGLSAAIRLVLGPGAK 573
PPNARLTVKFFDLKTQSAQAHVQKKMRAVAEELRRNGQDVLGALLFSCNGRGPRRFLDARSTHVDASAFTAEFPGRQVGGMYAMGEIGPQATYVDEEEEDDEIAGTDAGMVVKNGKGLGAGGSQILRNSQSGSCALQGFTAVFALLVAPRRSSQSSHLLDILNKDGLSAAIRLVLGPGAK
Sbjct: 1 PPNARLTVKFFDLKTQSAQAHVQKKMRAVAEELRRNGQDVLGALLFSCNGRGPRRFLDARSTHVDASAFTAEFPGRQVGGMYAMGEIGPQATYVDEEEEDDEIAGTDAGMVVKNGKGLGAGGSQILRNSQSGSCALQGFTAVFALLVAPRRSSQSSHLLDILNKDGLSAAIRLVLGPGAK 180
BLAST of EWM27650.1 vs. NCBI_GenBank
Match: gi|922859970|gb|KOO27917.1| (fist c domain protein [Chrysochromulina sp. CCMP291]) HSP 1 Score: 73.1738 bits (178), Expect = 3.496e-10 Identity = 75/273 (27.47%), Postives = 119/273 (43.59%), Query Frame = 0
Query: 22 EVLLEIVSFSDLETLCQLRATSRLWTVLVAEYEQANPSFTALVEP-MPALPAQAKRLCRATPSVGFLFN--------QMRSSPTEVAQMLSHLPPRCQVIGGDSQYPFTGADKRIVQGNTYAQDAILNLLSLPEACAQTFTVQNSDLEAVTVAPCEREGRRWLREDI-----LGLSPSIEYKVMVV-LPGQRADNVE-LLLKALQEGSPSAAIVGGIFARNLFCWKDGALRRPGGEGGNAEDGIVGMALWGNVPLQAVVSRGVVPCSPSFTVS 278
+VLL ++ L L A ++ + +L AE+ P + V + A A + CR+ PSVG F+ + ++ E+ +M LP +IG ++ T + VQ + L L PEA +FT+ D + P + + + + LG P +KV VV L G A + LL+ LQ P+AAI+GG+ +R GG EDG+ + GNVPL A+VSRG S ++ ++
Sbjct: 18 DVLLLCLAHVGASGLGHLVAVNKFFAILCAEHSSHTPFLASTVASGLGAAHAALEPQCRSAPSVGLFFSSEPLCSGRRSKTFSAELTRMAKRLPASAHMIGCNTHRIVT-TQRDAVQSGGGDKKVALQLGHFPEAKIGSFTLCPEDACKLGRDPNDLDDDALFTDLLTHVGALGGEP---WKVFVVILVGMNAGGFQQRLLEVLQAAHPTAAIIGGVATGTHL------VRAHGGAITALEDGLGCLMFGGNVPLVALVSRGAEAISGTYRMA 280
BLAST of EWM27650.1 vs. NCBI_GenBank
Match: gi|1129206268|gb|OLQ08429.1| (hypothetical protein AK812_SmicGene8097 [Symbiodinium microadriaticum]) HSP 1 Score: 66.2402 bits (160), Expect = 7.031e-8 Identity = 73/272 (26.84%), Postives = 116/272 (42.65%), Query Frame = 0
Query: 36 LCQLRATSRLWTVLVAEYEQANPSFTALVEPMPALPAQAKRLCRATPSVGFLF--NQMRSSPTE----VAQMLSHLPPRCQVIGG---DSQY---PFTGADKRIVQGNTYAQDAILNLLS-------------LPEACAQTFTVQNSDLEAVTVAPCEREGRRWLREDILGLSPSIEYKVMVVLPGQRADNV----ELLLKALQEGSPSAAIVGGIFARNLFCWKDGALRRPGGEGGNAEDGIVGMALWGNVPLQAVVSRGVVPCSPSFTVS 278
L Q+ SRL+ +L + + PS A + + + ++ A PS+GF+F + R S E V ++L LPP CQ++G D+Q P + +++ + + ++L+ PE C TF + +L A +A C G+ E+ +V++ G R + E + LQ+ P A I+GGI D L R GG G +G+AL G+VPL A+VSRG F S
Sbjct: 91 LAQVANCSRLFLLLSLDASK-RPSLVAAMGSPEEVSRKLRQSLAARPSLGFIFGPSAPRGSKAEARERVKKLLDGLPPECQIVGAATSDAQALVAPSDNTQETVMRDQESSSELEISLMLGAFPAAVAHSFYLSPEVCQDTFQLDGPEL-AKKLADC-------------GVPEGPEWGTVVLILGDRFQHRGFDPERFVAILQQRCPKAGIIGGIVG-------DPLLLRRGGRLQEHRSGALGLALRGDVPLTAMVSRGCRSIFQGFHTS 340 The following BLAST results are available for this feature:
BLAST of EWM27650.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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