EWM27650.1, cds3030 (CDS) Nannochloropsis gaditana

Overview
NameEWM27650.1
Unique Namecds3030
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:541336..543057 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27650.1
ProductFIST C domain protein
Orig transcript idgnl|cribi|Naga_100059g17.8055.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:541336..543057 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR019494FIST_C_domain
IPR013702FIST_domain_N
Homology
BLAST of EWM27650.1 vs. NCBI_GenBank
Match: gi|585109920|gb|EWM27650.1| (FIST C domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1163.29 bits (3008), Expect = 0.000e+0
Identity = 573/573 (100.00%), Postives = 573/573 (100.00%), Query Frame = 0
Query:    1 MPATSTFSSDPLPSFFTPVSTEVLLEIVSFSDLETLCQLRATSRLWTVLVAEYEQANPSFTALVEPMPALPAQAKRLCRATPSVGFLFNQMRSSPTEVAQMLSHLPPRCQVIGGDSQYPFTGADKRIVQGNTYAQDAILNLLSLPEACAQTFTVQNSDLEAVTVAPCEREGRRWLREDILGLSPSIEYKVMVVLPGQRADNVELLLKALQEGSPSAAIVGGIFARNLFCWKDGALRRPGGEGGNAEDGIVGMALWGNVPLQAVVSRGVVPCSPSFTVSSWEYEGEAVVVKSLSRPASGDARLDSAPDVVVNPLVAFEHAQRNGDIYVGLQIEDSAVPVNGGVDGGGAGHDSGVPGSAFKSRPPPYELLSFVFAVDEGAPVLLLSFVNKLQGGPPPNARLTVKFFDLKTQSAQAHVQKKMRAVAEELRRNGQDVLGALLFSCNGRGPRRFLDARSTHVDASAFTAEFPGRQVGGMYAMGEIGPQATYVDEEEEDDEIAGTDAGMVVKNGKGLGAGGSQILRNSQSGSCALQGFTAVFALLVAPRRSSQSSHLLDILNKDGLSAAIRLVLGPGAK 573
            MPATSTFSSDPLPSFFTPVSTEVLLEIVSFSDLETLCQLRATSRLWTVLVAEYEQANPSFTALVEPMPALPAQAKRLCRATPSVGFLFNQMRSSPTEVAQMLSHLPPRCQVIGGDSQYPFTGADKRIVQGNTYAQDAILNLLSLPEACAQTFTVQNSDLEAVTVAPCEREGRRWLREDILGLSPSIEYKVMVVLPGQRADNVELLLKALQEGSPSAAIVGGIFARNLFCWKDGALRRPGGEGGNAEDGIVGMALWGNVPLQAVVSRGVVPCSPSFTVSSWEYEGEAVVVKSLSRPASGDARLDSAPDVVVNPLVAFEHAQRNGDIYVGLQIEDSAVPVNGGVDGGGAGHDSGVPGSAFKSRPPPYELLSFVFAVDEGAPVLLLSFVNKLQGGPPPNARLTVKFFDLKTQSAQAHVQKKMRAVAEELRRNGQDVLGALLFSCNGRGPRRFLDARSTHVDASAFTAEFPGRQVGGMYAMGEIGPQATYVDEEEEDDEIAGTDAGMVVKNGKGLGAGGSQILRNSQSGSCALQGFTAVFALLVAPRRSSQSSHLLDILNKDGLSAAIRLVLGPGAK
Sbjct:    1 MPATSTFSSDPLPSFFTPVSTEVLLEIVSFSDLETLCQLRATSRLWTVLVAEYEQANPSFTALVEPMPALPAQAKRLCRATPSVGFLFNQMRSSPTEVAQMLSHLPPRCQVIGGDSQYPFTGADKRIVQGNTYAQDAILNLLSLPEACAQTFTVQNSDLEAVTVAPCEREGRRWLREDILGLSPSIEYKVMVVLPGQRADNVELLLKALQEGSPSAAIVGGIFARNLFCWKDGALRRPGGEGGNAEDGIVGMALWGNVPLQAVVSRGVVPCSPSFTVSSWEYEGEAVVVKSLSRPASGDARLDSAPDVVVNPLVAFEHAQRNGDIYVGLQIEDSAVPVNGGVDGGGAGHDSGVPGSAFKSRPPPYELLSFVFAVDEGAPVLLLSFVNKLQGGPPPNARLTVKFFDLKTQSAQAHVQKKMRAVAEELRRNGQDVLGALLFSCNGRGPRRFLDARSTHVDASAFTAEFPGRQVGGMYAMGEIGPQATYVDEEEEDDEIAGTDAGMVVKNGKGLGAGGSQILRNSQSGSCALQGFTAVFALLVAPRRSSQSSHLLDILNKDGLSAAIRLVLGPGAK 573          
BLAST of EWM27650.1 vs. NCBI_GenBank
Match: gi|553196002|ref|XP_005856246.1| (hypothetical protein NGA_2055400, partial [Nannochloropsis gaditana CCMP526] >gi|422292811|gb|EKU20113.1| hypothetical protein NGA_2055400, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 367.081 bits (941), Expect = 2.080e-122
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0
Query:  394 PPNARLTVKFFDLKTQSAQAHVQKKMRAVAEELRRNGQDVLGALLFSCNGRGPRRFLDARSTHVDASAFTAEFPGRQVGGMYAMGEIGPQATYVDEEEEDDEIAGTDAGMVVKNGKGLGAGGSQILRNSQSGSCALQGFTAVFALLVAPRRSSQSSHLLDILNKDGLSAAIRLVLGPGAK 573
            PPNARLTVKFFDLKTQSAQAHVQKKMRAVAEELRRNGQDVLGALLFSCNGRGPRRFLDARSTHVDASAFTAEFPGRQVGGMYAMGEIGPQATYVDEEEEDDEIAGTDAGMVVKNGKGLGAGGSQILRNSQSGSCALQGFTAVFALLVAPRRSSQSSHLLDILNKDGLSAAIRLVLGPGAK
Sbjct:    1 PPNARLTVKFFDLKTQSAQAHVQKKMRAVAEELRRNGQDVLGALLFSCNGRGPRRFLDARSTHVDASAFTAEFPGRQVGGMYAMGEIGPQATYVDEEEEDDEIAGTDAGMVVKNGKGLGAGGSQILRNSQSGSCALQGFTAVFALLVAPRRSSQSSHLLDILNKDGLSAAIRLVLGPGAK 180          
BLAST of EWM27650.1 vs. NCBI_GenBank
Match: gi|922859970|gb|KOO27917.1| (fist c domain protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 73.1738 bits (178), Expect = 3.496e-10
Identity = 75/273 (27.47%), Postives = 119/273 (43.59%), Query Frame = 0
Query:   22 EVLLEIVSFSDLETLCQLRATSRLWTVLVAEYEQANPSFTALVEP-MPALPAQAKRLCRATPSVGFLFN--------QMRSSPTEVAQMLSHLPPRCQVIGGDSQYPFTGADKRIVQGNTYAQDAILNLLSLPEACAQTFTVQNSDLEAVTVAPCEREGRRWLREDI-----LGLSPSIEYKVMVV-LPGQRADNVE-LLLKALQEGSPSAAIVGGIFARNLFCWKDGALRRPGGEGGNAEDGIVGMALWGNVPLQAVVSRGVVPCSPSFTVS 278
            +VLL  ++      L  L A ++ + +L AE+    P   + V   + A  A  +  CR+ PSVG  F+        + ++   E+ +M   LP    +IG ++    T   +  VQ     +   L L   PEA   +FT+   D   +   P + +      + +     LG  P   +KV VV L G  A   +  LL+ LQ   P+AAI+GG+            +R  GG     EDG+  +   GNVPL A+VSRG    S ++ ++
Sbjct:   18 DVLLLCLAHVGASGLGHLVAVNKFFAILCAEHSSHTPFLASTVASGLGAAHAALEPQCRSAPSVGLFFSSEPLCSGRRSKTFSAELTRMAKRLPASAHMIGCNTHRIVT-TQRDAVQSGGGDKKVALQLGHFPEAKIGSFTLCPEDACKLGRDPNDLDDDALFTDLLTHVGALGGEP---WKVFVVILVGMNAGGFQQRLLEVLQAAHPTAAIIGGVATGTHL------VRAHGGAITALEDGLGCLMFGGNVPLVALVSRGAEAISGTYRMA 280          
BLAST of EWM27650.1 vs. NCBI_GenBank
Match: gi|1129206268|gb|OLQ08429.1| (hypothetical protein AK812_SmicGene8097 [Symbiodinium microadriaticum])

HSP 1 Score: 66.2402 bits (160), Expect = 7.031e-8
Identity = 73/272 (26.84%), Postives = 116/272 (42.65%), Query Frame = 0
Query:   36 LCQLRATSRLWTVLVAEYEQANPSFTALVEPMPALPAQAKRLCRATPSVGFLF--NQMRSSPTE----VAQMLSHLPPRCQVIGG---DSQY---PFTGADKRIVQGNTYAQDAILNLLS-------------LPEACAQTFTVQNSDLEAVTVAPCEREGRRWLREDILGLSPSIEYKVMVVLPGQRADNV----ELLLKALQEGSPSAAIVGGIFARNLFCWKDGALRRPGGEGGNAEDGIVGMALWGNVPLQAVVSRGVVPCSPSFTVS 278
            L Q+   SRL+ +L  +  +  PS  A +     +  + ++   A PS+GF+F  +  R S  E    V ++L  LPP CQ++G    D+Q    P     + +++    + +  ++L+               PE C  TF +   +L A  +A C             G+    E+  +V++ G R  +     E  +  LQ+  P A I+GGI         D  L R GG       G +G+AL G+VPL A+VSRG       F  S
Sbjct:   91 LAQVANCSRLFLLLSLDASK-RPSLVAAMGSPEEVSRKLRQSLAARPSLGFIFGPSAPRGSKAEARERVKKLLDGLPPECQIVGAATSDAQALVAPSDNTQETVMRDQESSSELEISLMLGAFPAAVAHSFYLSPEVCQDTFQLDGPEL-AKKLADC-------------GVPEGPEWGTVVLILGDRFQHRGFDPERFVAILQQRCPKAGIIGGIVG-------DPLLLRRGGRLQEHRSGALGLALRGDVPLTAMVSRGCRSIFQGFHTS 340          
The following BLAST results are available for this feature:
BLAST of EWM27650.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585109920|gb|EWM27650.1|0.000e+0100.00FIST C domain protein [Nannochloropsis gaditana][more]
gi|553196002|ref|XP_005856246.1|2.080e-122100.00hypothetical protein NGA_2055400, partial [Nannoch... [more]
gi|922859970|gb|KOO27917.1|3.496e-1027.47fist c domain protein [Chrysochromulina sp. CCMP29... [more]
gi|1129206268|gb|OLQ08429.1|7.031e-826.84hypothetical protein AK812_SmicGene8097 [Symbiodin... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3038rna3038Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications