rna3034, rna3034 (mRNA) Nannochloropsis gaditana

Overview
Namerna3034
Unique Namerna3034
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1606
Alignment locationCM002460.1:534056..534646 +

Link to JBrowse

Properties
Property NameValue
Productdna-damage-repair toleration protein drt102
Orig transcript idgnl|cribi|Naga_100059g13.8038.mrna
Orig protein idgnl|cribi|Naga_100059g13.8038
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:534056..534646 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100059g13gene2912Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3034rna3034-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27633.1cds3026Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3034 ID=rna3034|Name=rna3034|organism=Nannochloropsis gaditana|type=mRNA|length=1606bp
ATGTGCAAGTATGGCCTGTGAGACGGTTGCCTTCCCAATTTAAGCTTCTT
ATATGCTTGACTCATTATTATATAAACAGCTGTAATCTGATGTGATCTTC
TACACTTATAGATTCCTCCCTAGGTTGGCAGCCCGGGCGCACGACGCCCG
TCATCCGTCGCATCGCCCTGCTACTCCGTTTGCTATCTTCAGGGCAATCA
TGGTAGCATCAGCTCTTTTTATCATGGATCTGAAAGGAAAGATCATCATT
TCACGCAACTATCGGGGGGATATTCCCATGACTGTTTCTGAAAGGTTTGC
GACGTATCTTCAAGAAAAAGAGGAGTCAGAGCAACGGCCCATTTTTACCG
AGGAGGGCTGCACATTCGCTTACCTCAAGTACAATAATCTATTTCTTCTT
AGCGTCACAAAACGCAACTCCAATGTGGCTCTCATGCTCGTGTACCTGTC
CCGTCTGGTGGACGTGTTCAAGGAATATTTTGGGGAGCTGGAAGAAGAGA
GCATCCGGGACAACTTCGTCATCATCTACGAGTTGATGGACGAGACCATG
GACTTTGGCTACCCTCAGACGACGGAGGCGAAGATTCTCCGGGAGTACAT
AACACAAGAGGGCAATCGCTTGGAGGCGGCACCTCGGCCCCCCGTAGCGT
TAACAAACACTGTCTCGTGGCGATCGGAGGGAATTAAGCACCGAAAGAAC
GAGATCTTCCTCGATGTTATCGAAAAACTTAATCTGCTGGTGTCAGCAAA
TGGAACGGTGCTTCATTCGGAGATTATTGGAGCTATCCGCATGAAATCTT
TTCTCAGCGGCATGCCTGAGCTAAAACTAGGCCTCAACGACAAACTCATG
TTCGAGGCATCGGGCAGAGCAGTTTCGGCATCCACCAAGGGGAAGGCGAT
TGAGCTGGAGGATATCAAGTTTCATCAGTGCGTGCGTCTGGCGAGATTTG
AGAACGATCGGACGATATCGTTCATCCCTCCAGACGGAGAGTTTGATTTG
ATGACATATCGTTTATCGACGCAGGTCAAACCACTCATATGGGTGGAAGC
AGTTGTCGAACCACACTCACACTCGAGGATTGAATACATGATAAAGGCCA
AAAGCCAATTTAAGTCTCGCTCCATCGCTAACAATGTGGACATTATCATT
CCTGTGCCTTCGGACGTCGACACACCTTCCTTTAAAGCCTCTATCGGCAC
AGTTACTTATCTTCCAGATAAGGATGCCATAGTCTGGGGCATTAAGCAAT
TTCATGGTCAACGTGAGTATCTAATGCGCGCCCACTTCGGTCTACCCTCA
ATTGCAGCTGAGGGATCATCAGCGAACGCCACGGAGAAGTGCTGGAAGAA
GCCTGTGCAAATCAAATTTGAGATCCCATACTTCACCGTCTCGGGCATTC
AAGTCCGGTACCTCAAGATCATAGAAAAAAGCGGCTTTGCTGCTTTGCCC
TGGGTTCGATACATAACGTGTGCAGGCGACGTATACCTTCGCATGGGAAC
CTAACGGAGGAAGTCAAAGCGTTGACAACTGAAGGGTAAATGGTAACTTT
GTACTAGAGCTCCAGCGACTCGGCCCAAAAAAATGTACACCAAAGTCCAG
ATTGTC
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protein sequence of rna3034

>rna3034-protein ID=rna3034-protein|Name=rna3034|organism=Nannochloropsis gaditana|type=polypeptide|length=196bp
MHYITSVSRVNDSTKGPAPANKCEGWPDEVQSFLDGSMPALAELDASRQA
VFSPTEEQEKEDEKRSHECGPEREENKGGRCPVCCISAGSSNHPFQPVAG
VQGAEWVQTRDAPTRAVVRFNGGSVEPTHHHTHGHDVFVTKGRKRVENLT
LGKSFELSAGSYLYTGAGERDRVVYYEDTEFILCCDGRFDVFWDEI
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mRNA from alignment at CM002460.1:534056..534646+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3034 ID=rna3034|Name=rna3034|organism=Nannochloropsis gaditana|type=mRNA|length=591bp|location=Sequence derived from alignment at CM002460.1:534056..534646+ (Nannochloropsis gaditana)
ATGCATTATATTACATCTGTAAGTAGAGTCAACGATTCGACAAAAGGCCC
CGCACCGGCCAACAAGTGTGAAGGATGGCCAGACGAGGTCCAGAGCTTTC
TGGACGGGTCCATGCCGGCCTTGGCCGAATTGGACGCCTCGCGACAAGCC
GTTTTCTCTCCCACcgaagagcaggagaaagaagatgaGAAGCGTTCGCA
TGAATGTGGCCCAGAACGAGAGGAAAACAAAGGCGGTCGCTGCCCTGTCT
GTTGCATATCTGCAGGATCGAGCAATCATCCGTTCCAACCTGTTGCGGGC
GTGCAGGGTGCAGAATGGGTACAAACAAGAGATGCACCCACCCGCGCGGT
GGTTCGATTTAATGGGGGAAGCGTGGAGCCCACGCACCATCACACCCACG
GGCACGATGTTTTCGTAACCAAGGGCAGGAAGCGGGTGGAAAACTTAACG
CTGGGCAAGAGCTTTGAACTATCGGCGGGGTCGTATCTGTACacgggagc
gggagagagagatCGTGTTGTGTACTATGAGGACACCGAATTTATTCTGT
GCTGTGACGGTCGCTTTGACGTTTTTTGGGATGAGATTTGa
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Coding sequence (CDS) from alignment at CM002460.1:534056..534646+

>rna3034 ID=rna3034|Name=rna3034|organism=Nannochloropsis gaditana|type=CDS|length=591bp|location=Sequence derived from alignment at CM002460.1:534056..534646+ (Nannochloropsis gaditana)
ATGCATTATATTACATCTGTAAGTAGAGTCAACGATTCGACAAAAGGCCC
CGCACCGGCCAACAAGTGTGAAGGATGGCCAGACGAGGTCCAGAGCTTTC
TGGACGGGTCCATGCCGGCCTTGGCCGAATTGGACGCCTCGCGACAAGCC
GTTTTCTCTCCCACcgaagagcaggagaaagaagatgaGAAGCGTTCGCA
TGAATGTGGCCCAGAACGAGAGGAAAACAAAGGCGGTCGCTGCCCTGTCT
GTTGCATATCTGCAGGATCGAGCAATCATCCGTTCCAACCTGTTGCGGGC
GTGCAGGGTGCAGAATGGGTACAAACAAGAGATGCACCCACCCGCGCGGT
GGTTCGATTTAATGGGGGAAGCGTGGAGCCCACGCACCATCACACCCACG
GGCACGATGTTTTCGTAACCAAGGGCAGGAAGCGGGTGGAAAACTTAACG
CTGGGCAAGAGCTTTGAACTATCGGCGGGGTCGTATCTGTACacgggagc
gggagagagagatCGTGTTGTGTACTATGAGGACACCGAATTTATTCTGT
GCTGTGACGGTCGCTTTGACGTTTTTTGGGATGAGATTTGa
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Synonyms
Publications