EWM27633.1, cds3026 (CDS) Nannochloropsis gaditana

Overview
NameEWM27633.1
Unique Namecds3026
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:534056..534646 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27633.1
Productdna-damage-repair toleration protein drt102
Orig transcript idgnl|cribi|Naga_100059g13.8038.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:534056..534646 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR011051RmlC_Cupin
IPR014710RmlC-like_jellyroll
Homology
BLAST of EWM27633.1 vs. NCBI_GenBank
Match: gi|585109903|gb|EWM27633.1| (dna-damage-repair toleration protein drt102 [Nannochloropsis gaditana])

HSP 1 Score: 410.223 bits (1053), Expect = 4.174e-145
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0
Query:    1 MHYITSVSRVNDSTKGPAPANKCEGWPDEVQSFLDGSMPALAELDASRQAVFSPTEEQEKEDEKRSHECGPEREENKGGRCPVCCISAGSSNHPFQPVAGVQGAEWVQTRDAPTRAVVRFNGGSVEPTHHHTHGHDVFVTKGRKRVENLTLGKSFELSAGSYLYTGAGERDRVVYYEDTEFILCCDGRFDVFWDEI 196
            MHYITSVSRVNDSTKGPAPANKCEGWPDEVQSFLDGSMPALAELDASRQAVFSPTEEQEKEDEKRSHECGPEREENKGGRCPVCCISAGSSNHPFQPVAGVQGAEWVQTRDAPTRAVVRFNGGSVEPTHHHTHGHDVFVTKGRKRVENLTLGKSFELSAGSYLYTGAGERDRVVYYEDTEFILCCDGRFDVFWDEI
Sbjct:    1 MHYITSVSRVNDSTKGPAPANKCEGWPDEVQSFLDGSMPALAELDASRQAVFSPTEEQEKEDEKRSHECGPEREENKGGRCPVCCISAGSSNHPFQPVAGVQGAEWVQTRDAPTRAVVRFNGGSVEPTHHHTHGHDVFVTKGRKRVENLTLGKSFELSAGSYLYTGAGERDRVVYYEDTEFILCCDGRFDVFWDEI 196          
BLAST of EWM27633.1 vs. NCBI_GenBank
Match: gi|1175885012|ref|XP_020596195.1| (DNA damage-repair/toleration protein DRT102-like [Phalaenopsis equestris])

HSP 1 Score: 139.043 bits (349), Expect = 2.678e-37
Identity = 72/181 (39.78%), Postives = 100/181 (55.25%), Query Frame = 0
Query:   15 KGPAPANKCEGWPDEVQSFLDGSMPALAELDASRQAVFSPTEEQEKEDEKRSHECGPEREENKGGRCPVCCISAGSSNHPFQPVAGVQGAEWVQTRDAPTRAVVRFNGGSVEPTHHHTHGHDVFVTKGRKRVENLTLGKSFELSAGSYLYTGAGERDRVVYYEDTEFILCCDGRFDVFWDE 195
            K P PA+  + WP ++QSFL+ S   +A++                            + ++    C +CC+        FQPV  + GAE    R++PT AVV+F  GS+EP HHHT GHDV V KGRK+V NL   +S+EL  G YL+T AG++ RV Y+EDTEF +  DG +D+F DE
Sbjct:   92 KSPCPASGDQPWPTDIQSFLENSTAEMAQI---------------------------PKPDSSSSNCAICCL---RKELVFQPVEIMPGAEMKIVRESPTSAVVKFKAGSLEPAHHHTFGHDVLVMKGRKKVWNLDKNESYELGEGDYLFTPAGDKHRVNYFEDTEFFIRWDGDWDIFLDE 242          
BLAST of EWM27633.1 vs. NCBI_GenBank
Match: gi|302754468|ref|XP_002960658.1| (hypothetical protein SELMODRAFT_73417 [Selaginella moellendorffii] >gi|300171597|gb|EFJ38197.1| hypothetical protein SELMODRAFT_73417 [Selaginella moellendorffii])

HSP 1 Score: 138.658 bits (348), Expect = 1.284e-36
Identity = 73/181 (40.33%), Postives = 96/181 (53.04%), Query Frame = 0
Query:   15 KGPAPANKCEGWPDEVQSFLDGSMPALAELDASRQAVFSPTEEQEKEDEKRSHECGPEREENKGGRCPVCCISAGSSNHPFQPVAGVQGAEWVQTRDAPTRAVVRFNGGSVEPTHHHTHGHDVFVTKGRKRVENLTLGKSFELSAGSYLYTGAGERDRVVYYEDTEFILCCDGRFDVFWDE 195
            K P PAN+   WP+E+ +FLD S+P +  +  +  A                    P      G  C +C +++  S   F PV  + G  W   R  PT AVVRF  GS+EP HHHT GHDV V +GRKRV N+T G+ F+L  G +LYT AG+  RV Y  DTEF +  DG +D+  DE
Sbjct:  132 KSPCPANQGNPWPEEIHAFLDKSLPEMEAIGGAASAKI------------------PNSSGAAGSDCAICELASARS---FDPVDIMPGGSWKILRQEPTSAVVRFKAGSLEPAHHHTFGHDVIVLEGRKRVWNVTKGEVFDLGTGDFLYTPAGDVHRVQYVTDTEFFIRWDGLWDILLDE 291          
BLAST of EWM27633.1 vs. NCBI_GenBank
Match: gi|302803251|ref|XP_002983379.1| (hypothetical protein SELMODRAFT_234225 [Selaginella moellendorffii] >gi|300149064|gb|EFJ15721.1| hypothetical protein SELMODRAFT_234225 [Selaginella moellendorffii])

HSP 1 Score: 138.272 bits (347), Expect = 1.298e-36
Identity = 73/181 (40.33%), Postives = 97/181 (53.59%), Query Frame = 0
Query:   15 KGPAPANKCEGWPDEVQSFLDGSMPALAELDASRQAVFSPTEEQEKEDEKRSHECGPEREENKGGRCPVCCISAGSSNHPFQPVAGVQGAEWVQTRDAPTRAVVRFNGGSVEPTHHHTHGHDVFVTKGRKRVENLTLGKSFELSAGSYLYTGAGERDRVVYYEDTEFILCCDGRFDVFWDE 195
            K P PAN+   WP+E+ +FLD S+P +  +  +  A                    P      G  C +C +++  S   F PV  + G  W   R  PT AVVRF  GS+EP HHHT GHDV V +GRKRV N+T G+ F+L+ G +LYT AG+  RV Y  DTEF +  DG +D+  DE
Sbjct:  132 KSPCPANQGNPWPEEIHTFLDKSLPEMEAIGGAASA------------------KNPNSSGAAGSDCAICELASARS---FDPVDIMPGGSWKILRQEPTSAVVRFKAGSLEPAHHHTFGHDVIVLEGRKRVWNVTKGEVFDLATGDFLYTPAGDVHRVQYVTDTEFFIRWDGLWDILLDE 291          
BLAST of EWM27633.1 vs. NCBI_GenBank
Match: gi|1175883700|ref|XP_020595494.1| (DNA damage-repair/toleration protein DRT102-like [Phalaenopsis equestris])

HSP 1 Score: 138.658 bits (348), Expect = 1.303e-36
Identity = 72/181 (39.78%), Postives = 100/181 (55.25%), Query Frame = 0
Query:   15 KGPAPANKCEGWPDEVQSFLDGSMPALAELDASRQAVFSPTEEQEKEDEKRSHECGPEREENKGGRCPVCCISAGSSNHPFQPVAGVQGAEWVQTRDAPTRAVVRFNGGSVEPTHHHTHGHDVFVTKGRKRVENLTLGKSFELSAGSYLYTGAGERDRVVYYEDTEFILCCDGRFDVFWDE 195
            K P PA+  + WP ++QSFL+ S   +A++                            + ++    C +CC+        FQPV  + GAE    R++PT AVV+F  GS+EP HHHT GHDV V KGRK+V NL   +S+EL  G YL+T AG++ RV Y+EDTEF +  DG +D+F DE
Sbjct:  147 KSPCPASGDQPWPTDIQSFLENSTAEMAQI---------------------------PKPDSSSSNCAICCL---RKELVFQPVEIMPGAEMKIVRESPTSAVVKFKAGSLEPAHHHTFGHDVLVMKGRKKVWNLDKNESYELGEGDYLFTPAGDKHRVNYFEDTEFFIRWDGDWDIFLDE 297          
BLAST of EWM27633.1 vs. NCBI_GenBank
Match: gi|657992794|ref|XP_008388656.1| (PREDICTED: DNA-damage-repair/toleration protein DRT102 [Malus domestica])

HSP 1 Score: 137.502 bits (345), Expect = 3.353e-36
Identity = 70/186 (37.63%), Postives = 101/186 (54.30%), Query Frame = 0
Query:   10 VNDSTKGPAPANKCEGWPDEVQSFLDGSMPALAELDASRQAVFSPTEEQEKEDEKRSHECGPEREENKGGRCPVCCISAGSSNHPFQPVAGVQGAEWVQTRDAPTRAVVRFNGGSVEPTHHHTHGHDVFVTKGRKRVENLTLGKSFELSAGSYLYTGAGERDRVVYYEDTEFILCCDGRFDVFWDE 195
            +N   K P PA+  + WP E++SFLD S+  + ++  + + V                       +++   C +CC+     N    P+  + G      R+ PT A+VRF  GSVEP HHHT GHD+ V  G+K V NLT  K F+L+ G YL+T AG+  RV YYEDTEF++  DG +D+F+DE
Sbjct:  133 LNTPFKSPCPASDSKPWPAEIESFLDNSIQEMPKIGGANKIV-----------------------DSEEASCAICCLV---KNRELNPIDIIPGGSMKILRETPTSAIVRFKAGSVEPAHHHTFGHDLVVLWGKKSVWNLTKEKRFDLTGGDYLFTPAGDVHRVKYYEDTEFLITWDGHWDMFFDE 292          
BLAST of EWM27633.1 vs. NCBI_GenBank
Match: gi|1201319820|gb|OVA18853.1| (Sugar-phosphate isomerase [Macleaya cordata])

HSP 1 Score: 137.117 bits (344), Expect = 3.527e-36
Identity = 72/181 (39.78%), Postives = 103/181 (56.91%), Query Frame = 0
Query:   15 KGPAPANKCEGWPDEVQSFLDGSMPALAELDASRQAVFSPTEEQEKEDEKRSHECGPEREENKGGRCPVCCISAGSSNHPFQPVAGVQGAEWVQTRDAPTRAVVRFNGGSVEPTHHHTHGHDVFVTKGRKRVENLTLGKSFELSAGSYLYTGAGERDRVVYYEDTEFILCCDGRFDVFWDE 195
            K P PA+    WP E++SFLD S+  ++++ +          +Q K+DE  +              C +CC++    N  F PV  + G      R++PT A+VRF  GSVEP HHHT GHD+ V KG KRV NLT  ++++L  G +L+T AG+  RV Y+EDTEF +  DG +D+F DE
Sbjct:  136 KSPCPASGNNPWPSEIESFLDESVTEMSKIGS----------DQIKKDESET--------------CAICCLA---KNREFSPVEIMPGGSMKIVRESPTSAIVRFKAGSVEPAHHHTFGHDLVVMKGSKRVWNLTKKENYDLGVGDFLFTPAGDVHRVKYFEDTEFFIKWDGHWDIFLDE 289          
BLAST of EWM27633.1 vs. NCBI_GenBank
Match: gi|658061958|ref|XP_008366864.1| (PREDICTED: DNA-damage-repair/toleration protein DRT102-like [Malus domestica])

HSP 1 Score: 137.502 bits (345), Expect = 3.935e-36
Identity = 70/186 (37.63%), Postives = 101/186 (54.30%), Query Frame = 0
Query:   10 VNDSTKGPAPANKCEGWPDEVQSFLDGSMPALAELDASRQAVFSPTEEQEKEDEKRSHECGPEREENKGGRCPVCCISAGSSNHPFQPVAGVQGAEWVQTRDAPTRAVVRFNGGSVEPTHHHTHGHDVFVTKGRKRVENLTLGKSFELSAGSYLYTGAGERDRVVYYEDTEFILCCDGRFDVFWDE 195
            +N   K P PA+  + WP E++SFLD S+  + ++  + + V                       +++   C +CC+     N    P+  + G      R+ PT A+VRF  GSVEP HHHT GHD+ V  G+K V NLT  K F+L+ G YL+T AG+  RV YYEDTEF++  DG +D+F+DE
Sbjct:  133 LNTPFKSPCPASDSKPWPAEIESFLDNSIQEMPKIGGANKIV-----------------------DSEEASCAICCLV---KNRELNPIDIIPGGSMKILRETPTSAIVRFKAGSVEPAHHHTFGHDLVVLWGKKSVWNLTKEKRFDLTGGDYLFTPAGDVHRVKYYEDTEFLITWDGHWDMFFDE 292          
BLAST of EWM27633.1 vs. NCBI_GenBank
Match: gi|1098765396|ref|XP_018845848.1| (PREDICTED: DNA-damage-repair/toleration protein DRT102-like [Juglans regia])

HSP 1 Score: 136.732 bits (343), Expect = 7.247e-36
Identity = 67/181 (37.02%), Postives = 100/181 (55.25%), Query Frame = 0
Query:   15 KGPAPANKCEGWPDEVQSFLDGSMPALAELDASRQAVFSPTEEQEKEDEKRSHECGPEREENKGGRCPVCCISAGSSNHPFQPVAGVQGAEWVQTRDAPTRAVVRFNGGSVEPTHHHTHGHDVFVTKGRKRVENLTLGKSFELSAGSYLYTGAGERDRVVYYEDTEFILCCDGRFDVFWDE 195
            K P PA+  + WP+++QSFLD S+  + ++ +  Q+                       + +    C +CC+     N    P+  + G      R++PT A+VRF  GSVEP HHHT GHD+ V +G+K V NLT  + ++L  G YL+T AG+  RV YYEDTEF +  DG++D+F+DE
Sbjct:  140 KAPCPASGSKPWPEDIQSFLDNSLSEMPKIGSESQS-----------------------DPDSTATCAICCLV---KNRELNPIDLIPGGSMKILRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKKEKYDLVVGDYLFTPAGDVHRVKYYEDTEFFIKWDGKWDMFFDE 294          
BLAST of EWM27633.1 vs. NCBI_GenBank
Match: gi|1098765398|ref|XP_018845850.1| (PREDICTED: DNA-damage-repair/toleration protein DRT102-like [Juglans regia])

HSP 1 Score: 136.732 bits (343), Expect = 8.415e-36
Identity = 67/181 (37.02%), Postives = 100/181 (55.25%), Query Frame = 0
Query:   15 KGPAPANKCEGWPDEVQSFLDGSMPALAELDASRQAVFSPTEEQEKEDEKRSHECGPEREENKGGRCPVCCISAGSSNHPFQPVAGVQGAEWVQTRDAPTRAVVRFNGGSVEPTHHHTHGHDVFVTKGRKRVENLTLGKSFELSAGSYLYTGAGERDRVVYYEDTEFILCCDGRFDVFWDE 195
            K P PA+  + WP+++QSFLD S+  + ++ +  Q+                       + +    C +CC+     N    P+  + G      R++PT A+VRF  GSVEP HHHT GHD+ V +G+K V NLT  + ++L  G YL+T AG+  RV YYEDTEF +  DG++D+F+DE
Sbjct:  140 KAPCPASGSKPWPEDIQSFLDNSLSEIPKIGSESQS-----------------------DPDSTATCAICCLV---KNRELNPIDLIPGGSMKILRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKKEKYDLVVGDYLFTPAGDVHRVKYYEDTEFFIKWDGKWDMFFDE 294          
The following BLAST results are available for this feature:
BLAST of EWM27633.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109903|gb|EWM27633.1|4.174e-145100.00dna-damage-repair toleration protein drt102 [Nanno... [more]
gi|1175885012|ref|XP_020596195.1|2.678e-3739.78DNA damage-repair/toleration protein DRT102-like [... [more]
gi|302754468|ref|XP_002960658.1|1.284e-3640.33hypothetical protein SELMODRAFT_73417 [Selaginella... [more]
gi|302803251|ref|XP_002983379.1|1.298e-3640.33hypothetical protein SELMODRAFT_234225 [Selaginell... [more]
gi|1175883700|ref|XP_020595494.1|1.303e-3639.78DNA damage-repair/toleration protein DRT102-like [... [more]
gi|657992794|ref|XP_008388656.1|3.353e-3637.63PREDICTED: DNA-damage-repair/toleration protein DR... [more]
gi|1201319820|gb|OVA18853.1|3.527e-3639.78Sugar-phosphate isomerase [Macleaya cordata][more]
gi|658061958|ref|XP_008366864.1|3.935e-3637.63PREDICTED: DNA-damage-repair/toleration protein DR... [more]
gi|1098765396|ref|XP_018845848.1|7.247e-3637.02PREDICTED: DNA-damage-repair/toleration protein DR... [more]
gi|1098765398|ref|XP_018845850.1|8.415e-3637.02PREDICTED: DNA-damage-repair/toleration protein DR... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3034rna3034Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications