rna3026, rna3026 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3026
Unique Name	rna3026
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1293
Alignment location	CM002460.1:519525..520760 -

Link to JBrowse

Properties


Property Name	Value
Product	rab gtpase
Orig transcript id	gnl\|cribi\|Naga_100059g6.8045.mrna
Orig protein id	gnl\|cribi\|Naga_100059g6.8045
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:519525..520760 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100059g6	gene2905	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3026	rna3026-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27640.1	cds3018	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:519525..520760-
coding sequence from alignment at CM002460.1:519525..520760-

mRNA sequence

>rna3026 ID=rna3026|Name=rna3026|organism=Nannochloropsis gaditana|type=mRNA|length=1293bp
ATGTCACGCCTGTGGCCAACTTTGGTGGCCAAAAAGCTTCCGCGTACAGG
CAATAAATGGCGCTTCCACATCTCATCAACTATCCCACCACTTGTCCTCT
TTCGTCGGCGGCTGGGTACGCCCAAAAAAACAAGCGGGCTTGGTCGCTTC
AAGTCGCCTATTATCACGCACCTGTGGTCACAACGAGCAACTGGCAAGGA
ATTAGAGATAGACGTTCGTTCTCCGACGGAGCCTGTAGAGCGAACCCCTA
GCGAATCCCAAACGTCTGTGACGTATGAGTTCACTCGGGAACCTTTTCTG
TCTCAAAGCTACGAAAACCCTTGGGGATTTTTCCGGAAAGGAAAGCTCTT
GGAAGATATGGACGCACTCGCTGGGAACGTTGCTTTTAAACATTGCGAAA
AGGACGGCAAGGTTCCATTGCTTGTAACGGCAAGTGTAGATAGGATTAGA
CTTTCGAGCAATCCTAAATTGGATCGCGACATGGAGATGACGGGGCGAGT
TGTATGGACAGGGTCTTCAAGCATGCAGATAGATTTAGAGGTGCATGCAT
TGCCTGATGCCAAGCCTTGGATAAGTGCATCCTTCACATTTGTAGCCCGG
CACCCTCAGACGGCTAAAGCAACGGCCATCAACAAGTTGAAGCCGGAGAG
TGCCGCAGAGAGGGAAACATTCTCAGCAGTGGAACAAAAAAATCAACGCC
GTAAGACAGTGCGCAAGGCAAAAGGGACAGAAGGCAGCCCGTCCCTAAAA
TCGGGAGCGGTGGACGTAGAGACCATGATAAAATTGTTGTTGAGTCAAGC
GCGCCCTTTGATGGAAATGCCTTGCCTTGCGGACCCTACATGCGTTTTGG
TGGATAACACACGGGCATCGAACTCCAGCATAATGCAGCCTCAGCAACGC
AATATGCTGAATCGTGTCTTTGGTGGTTTTTTGATGAGAAGAGCTTATGA
AATCGCGTATTCCACTTGCTATCTGTTTGCGGGGAGTCGACCAGAATTTT
TCCAGGTGGCGCACGTCGATTTCACGAGTCCCGTAGATGTGGGAGACCTG
ATGCGTTTTGACGCTGCTGTCCTCTACACGCACACAGGCCAACAAACGGG
CTCGCCCCACGTGCATGTCCAGGTCGTGGCGTCCATCTGTCGGCCCGAGA
CAGTGCACAGCACCATCTCCAACACCTTCAATTTCGTCTTTCGTGTGCCC
GGGAGGCCCACGGTTCGAAAGGTGCTGCCCGCCAACTTGGATCAAGCGAA
GCGAATGATCGAGCGCATGACCGCGGTACTGGAAGACGATTGA

protein sequence of rna3026

>rna3026-protein ID=rna3026-protein|Name=rna3026|organism=Nannochloropsis gaditana|type=polypeptide|length=295bp
MARQENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKI
KNLELDGRRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFE
SIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVSTEEGQSLANDFGIQF
FETSAKNDINVEKSFVTIAREVKNRMLVDGGPRATGGKAIVDAKRSNEAK
KCWSRGWNEGVGRHVRCGGRGSNRLSRAKRVTKRYVRYSEGACLPCLCLG
AGRKATDEGFYHPKRNLTIPKGIHKGHCCIGGRSLFRGLLMASAL

mRNA from alignment at CM002460.1:519525..520760-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3026 ID=rna3026|Name=rna3026|organism=Nannochloropsis gaditana|type=mRNA|length=1236bp|location=Sequence derived from alignment at CM002460.1:519525..520760- (Nannochloropsis gaditana)
ATGGCTCGACAAGAAAACCCGTTCGACATGCAGATCAAGCTGCTGATGAT
AGGGGACTCGGGGGTGGGAAAGACCTGTCTGCTCCTGCGGTATGCGAACG
ACTCGTTCTCGCCCACCTTTATCACCACCATCGGGTAAGGGATATAAGAG
GGAGGGCTTTGGCAGGGGTGGCGGATAAAGAGCAACGCTTCGGTCGCGTA
AGACACGCTCGGGACCCTTGCGCATGACAGCGCGAATTAAGTTCCGTTTT
GAAGTCTGACGTGTGAACGCTTTTCATTCAGCGTCTCCGTAATGAGGTCA
AGTACGTACTCCTACCAATTTAACTGCCCCAGCGCTCATCTCTATCTGCT
TCCCTTCCATGCTATTCCTTCTCGTCAGCATTGACTTTAAGATCAAGAAT
TTGGAGCTAGACGGGAGGCGGATCAAACTCCAGATCTGGGACACAGCGGG
GCAAGAGCGTTTCCGAACAATCACCACGTCCTACTTCCGGGGAGCCCAAG
GCATCCTTCTTGTCTATGACGTGACGGATCGAAGATCCTTTGAATCCATT
CGTAACTGGGTCGGTCAGATCCAACAGCACGCGGATGTGCACGTGAATAA
AATCTTGATTGGAAACAAATGCGACATGACGCCGCAGCGGGTGGTGTCCA
CGGAGGAAGGCCAGAGCCTGGCGAACGACTTCGGTATTCAATTTTTCGAA
ACGTCAGCGAAGAATGACATTAATGTGGAGAAATCGTTTGTAACGATTGC
GCGGGAGGTGAAGAACAGGATGTTGGTGGACGGAGGTCCGCGGGCGACGG
GAGGGAAGGCGATTGTGGACGCGAAGAGGTCAAACGAGGCGAAGAAGTGC
TGTTAGGCCCATAGGCTCACATGTCGGGCTCATGTGGCGCGGGAAGGGTC
TCGGGGATGGAACGAGGGGGTTGGGCGGCATGTACGGTGTGGCGGTAGAG
GGAGCAACCGGTTGAGTAGGGCGAAACGTGTGACGAAACGCTACGTACGA
TATAGCGAAGGCGCATGCCTCCCATGTCTGTGTTTGGGTGCGGGGCGAAA
AGCGACGGGTTAAAGATGAGGGGGGGGAGCAAAGAATCCTTCGAGACCAG
TGGCGGCGAGCCATGAGACGAAGGGTTTTACCATCCCAAGAGAAATTTGA
CAATTCCCAAGGGCATCCATAAAGGTCATTGTTGTATAGGCGGACGTTCC
CTTTTTCGAGGTTTACTTATGGCATCAGCACTATAA

Coding sequence (CDS) from alignment at CM002460.1:519525..520760-

>rna3026 ID=rna3026|Name=rna3026|organism=Nannochloropsis gaditana|type=CDS|length=3552bp|location=Sequence derived from alignment at CM002460.1:519525..520760- (Nannochloropsis gaditana)
ACGAAGGGTTTTACCATCCCAAGAGAAATTTGACAATTCCCAAGGGCATC
CATAAAGGTCATTGTTGTATAGGCGGACGTTCCCTTTTTCGAGGTTTACT
TATGGCATCAGCACTATAAGGTCTCGGGGATGGAACGAGGGGGTTGGGCG
GCATGTACGGTGTGGCGGTAGAGGGAGCAACCGGTTGAGTAGGGCGAAAC
GTGTGACGAAACGCTACGTACGATATAGCGAAGGCGCATGCCTCCCATGT
CTGTGTTTGGGTGCGGGGCGAAAAGCGACGGCATTGACTTTAAGATCAAG
AATTTGGAGCTAGACGGGAGGCGGATCAAACTCCAGATCTGGGACACAGC
GGGGCAAGAGCGTTTCCGAACAATCACCACGTCCTACTTCCGGGGAGCCC
AAGGCATCCTTCTTGTCTATGACGTGACGGATCGAAGATCCTTTGAATCC
ATTCGTAACTGGGTCGGTCAGATCCAACAGCACGCGGATGTGCACGTGAA
TAAAATCTTGATTGGAAACAAATGCGACATGACGCCGCAGCGGGTGGTGT
CCACGGAGGAAGGCCAGAGCCTGGCGAACGACTTCGGTATTCAATTTTTC
GAAACGTCAGCGAAGAATGACATTAATGTGGAGAAATCGTTTGTAACGAT
TGCGCGGGAGGTGAAGAACAGGATGTTGGTGGACGGAGGTCCGCGGGCGA
CGGGAGGGAAGGCGATTGTGGACGCGAAGAGGTCAAACGAGGCGAAGAAG
TGCTATGGCTCGACAAGAAAACCCGTTCGACATGCAGATCAAGCTGCTGA
TGATAGGGGACTCGGGGGTGGGAAAGACCTGTCTGCTCCTGCGGTATGCG
AACGACTCGTTCTCGCCCACCTTTATCACCACCATCGGACGAAGGGTTTT
ACCATCCCAAGAGAAATTTGACAATTCCCAAGGGCATCCATAAAGGTCAT
TGTTGTATAGGCGGACGTTCCCTTTTTCGAGGTTTACTTATGGCATCAGC
ACTATAAGGTCTCGGGGATGGAACGAGGGGGTTGGGCGGCATGTACGGTG
TGGCGGTAGAGGGAGCAACCGGTTGAGTAGGGCGAAACGTGTGACGAAAC
GCTACGTACGATATAGCGAAGGCGCATGCCTCCCATGTCTGTGTTTGGGT
GCGGGGCGAAAAGCGACGGCATTGACTTTAAGATCAAGAATTTGGAGCTA
GACGGGAGGCGGATCAAACTCCAGATCTGGGACACAGCGGGGCAAGAGCG
TTTCCGAACAATCACCACGTCCTACTTCCGGGGAGCCCAAGGCATCCTTC
TTGTCTATGACGTGACGGATCGAAGATCCTTTGAATCCATTCGTAACTGG
GTCGGTCAGATCCAACAGCACGCGGATGTGCACGTGAATAAAATCTTGAT
TGGAAACAAATGCGACATGACGCCGCAGCGGGTGGTGTCCACGGAGGAAG
GCCAGAGCCTGGCGAACGACTTCGGTATTCAATTTTTCGAAACGTCAGCG
AAGAATGACATTAATGTGGAGAAATCGTTTGTAACGATTGCGCGGGAGGT
GAAGAACAGGATGTTGGTGGACGGAGGTCCGCGGGCGACGGGAGGGAAGG
CGATTGTGGACGCGAAGAGGTCAAACGAGGCGAAGAAGTGCTATGGCTCG
ACAAGAAAACCCGTTCGACATGCAGATCAAGCTGCTGATGATAGGGGACT
CGGGGGTGGGAAAGACCTGTCTGCTCCTGCGGTATGCGAACGACTCGTTC
TCGCCCACCTTTATCACCACCATCGGACGAAGGGTTTTACCATCCCAAGA
GAAATTTGACAATTCCCAAGGGCATCCATAAAGGTCATTGTTGTATAGGC
GGACGTTCCCTTTTTCGAGGTTTACTTATGGCATCAGCACTATAAGGTCT
CGGGGATGGAACGAGGGGGTTGGGCGGCATGTACGGTGTGGCGGTAGAGG
GAGCAACCGGTTGAGTAGGGCGAAACGTGTGACGAAACGCTACGTACGAT
ATAGCGAAGGCGCATGCCTCCCATGTCTGTGTTTGGGTGCGGGGCGAAAA
GCGACGGCATTGACTTTAAGATCAAGAATTTGGAGCTAGACGGGAGGCGG
ATCAAACTCCAGATCTGGGACACAGCGGGGCAAGAGCGTTTCCGAACAAT
CACCACGTCCTACTTCCGGGGAGCCCAAGGCATCCTTCTTGTCTATGACG
TGACGGATCGAAGATCCTTTGAATCCATTCGTAACTGGGTCGGTCAGATC
CAACAGCACGCGGATGTGCACGTGAATAAAATCTTGATTGGAAACAAATG
CGACATGACGCCGCAGCGGGTGGTGTCCACGGAGGAAGGCCAGAGCCTGG
CGAACGACTTCGGTATTCAATTTTTCGAAACGTCAGCGAAGAATGACATT
AATGTGGAGAAATCGTTTGTAACGATTGCGCGGGAGGTGAAGAACAGGAT
GTTGGTGGACGGAGGTCCGCGGGCGACGGGAGGGAAGGCGATTGTGGACG
CGAAGAGGTCAAACGAGGCGAAGAAGTGCTATGGCTCGACAAGAAAACCC
GTTCGACATGCAGATCAAGCTGCTGATGATAGGGGACTCGGGGGTGGGAA
AGACCTGTCTGCTCCTGCGGTATGCGAACGACTCGTTCTCGCCCACCTTT
ATCACCACCATCGGACGAAGGGTTTTACCATCCCAAGAGAAATTTGACAA
TTCCCAAGGGCATCCATAAAGGTCATTGTTGTATAGGCGGACGTTCCCTT
TTTCGAGGTTTACTTATGGCATCAGCACTATAAGGTCTCGGGGATGGAAC
GAGGGGGTTGGGCGGCATGTACGGTGTGGCGGTAGAGGGAGCAACCGGTT
GAGTAGGGCGAAACGTGTGACGAAACGCTACGTACGATATAGCGAAGGCG
CATGCCTCCCATGTCTGTGTTTGGGTGCGGGGCGAAAAGCGACGGCATTG
ACTTTAAGATCAAGAATTTGGAGCTAGACGGGAGGCGGATCAAACTCCAG
ATCTGGGACACAGCGGGGCAAGAGCGTTTCCGAACAATCACCACGTCCTA
CTTCCGGGGAGCCCAAGGCATCCTTCTTGTCTATGACGTGACGGATCGAA
GATCCTTTGAATCCATTCGTAACTGGGTCGGTCAGATCCAACAGCACGCG
GATGTGCACGTGAATAAAATCTTGATTGGAAACAAATGCGACATGACGCC
GCAGCGGGTGGTGTCCACGGAGGAAGGCCAGAGCCTGGCGAACGACTTCG
GTATTCAATTTTTCGAAACGTCAGCGAAGAATGACATTAATGTGGAGAAA
TCGTTTGTAACGATTGCGCGGGAGGTGAAGAACAGGATGTTGGTGGACGG
AGGTCCGCGGGCGACGGGAGGGAAGGCGATTGTGGACGCGAAGAGGTCAA
ACGAGGCGAAGAAGTGCTATGGCTCGACAAGAAAACCCGTTCGACATGCA
GATCAAGCTGCTGATGATAGGGGACTCGGGGGTGGGAAAGACCTGTCTGC
TCCTGCGGTATGCGAACGACTCGTTCTCGCCCACCTTTATCACCACCATC
GG

Synonyms

Publications