EWM27640.1, cds3018 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27640.1 vs. NCBI_GenBank
Match: gi|585109910|gb|EWM27640.1| (rab gtpase [Nannochloropsis gaditana]) HSP 1 Score: 612.068 bits (1577), Expect = 0.000e+0 Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 0
Query: 1 MARQENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGRRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVSTEEGQSLANDFGIQFFETSAKNDINVEKSFVTIAREVKNRMLVDGGPRATGGKAIVDAKRSNEAKKCWSRGWNEGVGRHVRCGGRGSNRLSRAKRVTKRYVRYSEGACLPCLCLGAGRKATDEGFYHPKRNLTIPKGIHKGHCCIGGRSLFRGLLMASAL 295
MARQENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGRRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVSTEEGQSLANDFGIQFFETSAKNDINVEKSFVTIAREVKNRMLVDGGPRATGGKAIVDAKRSNEAKKCWSRGWNEGVGRHVRCGGRGSNRLSRAKRVTKRYVRYSEGACLPCLCLGAGRKATDEGFYHPKRNLTIPKGIHKGHCCIGGRSLFRGLLMASAL
Sbjct: 1 MARQENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGRRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVSTEEGQSLANDFGIQFFETSAKNDINVEKSFVTIAREVKNRMLVDGGPRATGGKAIVDAKRSNEAKKCWSRGWNEGVGRHVRCGGRGSNRLSRAKRVTKRYVRYSEGACLPCLCLGAGRKATDEGFYHPKRNLTIPKGIHKGHCCIGGRSLFRGLLMASAL 295
BLAST of EWM27640.1 vs. NCBI_GenBank
Match: gi|301117946|ref|XP_002906701.1| (Rab8 family GTPase, putative [Phytophthora infestans T30-4] >gi|262108050|gb|EEY66102.1| Rab8 family GTPase, putative [Phytophthora infestans T30-4]) HSP 1 Score: 335.495 bits (859), Expect = 1.133e-113 Identity = 156/183 (85.25%), Postives = 173/183 (94.54%), Query Frame = 0
Query: 1 MARQENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGRRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVSTEEGQSLANDFGIQFFETSAKNDINVEKSFVTIAREVKNRMLVDGGPR 183
MAR ENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKN+ELD +++KLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDR SF+SIRNWVGQIQQHADVHVNKILIGNKCDMT +VVSTEEGQ+LA+++G++FFETSAKN+INVE F+ IAREVKNR++ +GGP
Sbjct: 1 MARHENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNIELDNKKVKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRASFQSIRNWVGQIQQHADVHVNKILIGNKCDMTDDKVVSTEEGQALADEYGVKFFETSAKNNINVEGGFIEIAREVKNRLMEEGGPH 183
BLAST of EWM27640.1 vs. NCBI_GenBank
Match: gi|675197121|ref|XP_008907445.1| (hypothetical protein PPTG_13487 [Phytophthora parasitica INRA-310] >gi|675197123|ref|XP_008907446.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|695376364|ref|XP_009515766.1| hypothetical protein PHYSODRAFT_353544 [Phytophthora sojae] >gi|348688677|gb|EGZ28491.1| hypothetical protein PHYSODRAFT_353544 [Phytophthora sojae] >gi|566020914|gb|ETI43825.1| hypothetical protein F443_11412 [Phytophthora parasitica P1569] >gi|566020915|gb|ETI43826.1| hypothetical protein, variant [Phytophthora parasitica P1569] >gi|567958205|gb|ETK83797.1| hypothetical protein L915_11102 [Phytophthora parasitica] >gi|567958206|gb|ETK83798.1| hypothetical protein, variant [Phytophthora parasitica] >gi|567986898|gb|ETL37213.1| hypothetical protein L916_11000 [Phytophthora parasitica] >gi|567986899|gb|ETL37214.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568016268|gb|ETL90445.1| hypothetical protein L917_10909 [Phytophthora parasitica] >gi|568046644|gb|ETM43749.1| hypothetical protein L914_10935 [Phytophthora parasitica] >gi|568046645|gb|ETM43750.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568092260|gb|ETN07069.1| hypothetical protein PPTG_13487 [Phytophthora parasitica INRA-310] >gi|568092261|gb|ETN07070.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|570324553|gb|ETO72501.1| hypothetical protein F444_11482 [Phytophthora parasitica P1976] >gi|570324554|gb|ETO72502.1| hypothetical protein, variant [Phytophthora parasitica P1976] >gi|570948379|gb|ETP13636.1| hypothetical protein F441_11329 [Phytophthora parasitica CJ01A1] >gi|570948380|gb|ETP13637.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1] >gi|570981225|gb|ETP41699.1| hypothetical protein F442_11297 [Phytophthora parasitica P10297] >gi|570981226|gb|ETP41700.1| hypothetical protein, variant [Phytophthora parasitica P10297] >gi|970616752|gb|KUF64898.1| Ras-related protein Rab-8A [Phytophthora nicotianae] >gi|970658642|gb|KUF96380.1| hypothetical protein AM588_10011375 [Phytophthora nicotianae]) HSP 1 Score: 334.724 bits (857), Expect = 1.662e-113 Identity = 156/183 (85.25%), Postives = 173/183 (94.54%), Query Frame = 0
Query: 1 MARQENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGRRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVSTEEGQSLANDFGIQFFETSAKNDINVEKSFVTIAREVKNRMLVDGGPR 183
MAR ENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKN+ELD +++KLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDR SF+SIRNWVGQIQQHADVHVNKILIGNKCDMT +VVSTEEGQ+LA+++G++FFETSAKN+INVE F+ IAREVKNR++ +GGP
Sbjct: 1 MARHENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNIELDNKKVKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRASFQSIRNWVGQIQQHADVHVNKILIGNKCDMTDDKVVSTEEGQALADEYGVKFFETSAKNNINVEGGFIEIAREVKNRLMEEGGPH 183
BLAST of EWM27640.1 vs. NCBI_GenBank
Match: gi|669157376|ref|XP_008614250.1| (rab family, other [Saprolegnia diclina VS20] >gi|530734067|gb|EQC32309.1| rab family, other [Saprolegnia diclina VS20] >gi|1173934109|gb|OQR85584.1| Rab8 family GTPase [Achlya hypogyna]) HSP 1 Score: 331.257 bits (848), Expect = 5.623e-112 Identity = 153/183 (83.61%), Postives = 170/183 (92.90%), Query Frame = 0
Query: 1 MARQENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGRRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVSTEEGQSLANDFGIQFFETSAKNDINVEKSFVTIAREVKNRMLVDGGPR 183
MAR ENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFK+KN+ELDG++IKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDR SF SIRNWVGQIQQHADVHVNKIL+GNKCDM +VVSTEEGQ+LA+++G++FFETSAKN+INVE F+ IA EVK R++ +GGP
Sbjct: 1 MARNENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKVKNIELDGKKIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRASFNSIRNWVGQIQQHADVHVNKILVGNKCDMLDDKVVSTEEGQALADEYGVKFFETSAKNNINVESGFIEIANEVKTRLMEEGGPH 183
BLAST of EWM27640.1 vs. NCBI_GenBank
Match: gi|325179736|emb|CCA14139.1| (Rab8 family GTPase putative [Albugo laibachii Nc14]) HSP 1 Score: 331.257 bits (848), Expect = 7.601e-112 Identity = 154/181 (85.08%), Postives = 172/181 (95.03%), Query Frame = 0
Query: 1 MARQENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGRRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVSTEEGQSLANDFGIQFFETSAKNDINVEKSFVTIAREVKNRMLVDGG 181
MAR ENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKN+ELDG++IKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDR SF+SIRNWVGQIQQHADVHVNKILIGNKCDM +V+STEEGQ+LA+++G++F+ETSAKN+INVE F+ IAREVKNR++ +GG
Sbjct: 18 MARHENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNIELDGKKIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRASFQSIRNWVGQIQQHADVHVNKILIGNKCDMMDDKVISTEEGQALADEYGVRFYETSAKNNINVEGGFIDIAREVKNRLMEEGG 198
BLAST of EWM27640.1 vs. NCBI_GenBank
Match: gi|673036300|ref|XP_008872111.1| (hypothetical protein H310_08215 [Aphanomyces invadans] >gi|574472550|gb|ETV99555.1| hypothetical protein H310_08215 [Aphanomyces invadans]) HSP 1 Score: 330.487 bits (846), Expect = 1.061e-111 Identity = 156/206 (75.73%), Postives = 178/206 (86.41%), Query Frame = 0
Query: 1 MARQENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGRRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVSTEEGQSLANDFGIQFFETSAKNDINVEKSFVTIAREVKNRMLVDGGPRATGGKAIVDAKRSNEAKKCWSRG 206
MAR ENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFK+KN++LDG++IKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDR SF SIRNWVGQIQQHADVHVNKIL+GNKCDM +VVSTEEGQ+LA+++G++FFETSAKN+INVE F+ IA EVK R++ +GGP + K+ N+ K + G
Sbjct: 1 MARNENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKVKNIDLDGKKIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRASFNSIRNWVGQIQQHADVHVNKILVGNKCDMLDDKVVSTEEGQALADEYGVKFFETSAKNNINVEGGFIEIANEVKTRLMEEGGPHKKSDLVVNLGKKGNDPTKASNGG 206
BLAST of EWM27640.1 vs. NCBI_GenBank
Match: gi|813208884|ref|XP_012210283.1| (hypothetical protein SPRG_15745 [Saprolegnia parasitica CBS 223.65] >gi|641524396|gb|KDO18996.1| hypothetical protein SPRG_15745 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 329.717 bits (844), Expect = 1.915e-111 Identity = 152/183 (83.06%), Postives = 170/183 (92.90%), Query Frame = 0
Query: 1 MARQENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGRRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVSTEEGQSLANDFGIQFFETSAKNDINVEKSFVTIAREVKNRMLVDGGPR 183
MAR ENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFK+KN++LDG++IKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDR SF SIRNWVGQIQQHADVHVNKIL+GNKCDM +VVSTEEGQ+LA+++G++FFETSAKN+INVE F+ IA EVK R++ +GGP
Sbjct: 1 MARNENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKVKNIDLDGKKIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRASFNSIRNWVGQIQQHADVHVNKILVGNKCDMLDDKVVSTEEGQALADEYGVKFFETSAKNNINVESGFIEIANEVKTRLMEEGGPH 183
BLAST of EWM27640.1 vs. NCBI_GenBank
Match: gi|1173927282|gb|OQR81313.1| (Rab8 family GTPase [Thraustotheca clavata]) HSP 1 Score: 329.331 bits (843), Expect = 2.518e-111 Identity = 152/183 (83.06%), Postives = 170/183 (92.90%), Query Frame = 0
Query: 1 MARQENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGRRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVSTEEGQSLANDFGIQFFETSAKNDINVEKSFVTIAREVKNRMLVDGGPR 183
MAR ENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFK+KN++LDG++IKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDR SF SIRNWVGQIQQHADVHVNKIL+GNKCDM +VVSTEEGQ+LA+++G++FFETSAKN+INVE F+ IA EVK R++ +GGP
Sbjct: 1 MARNENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKVKNIDLDGKKIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRASFNSIRNWVGQIQQHADVHVNKILVGNKCDMLDDKVVSTEEGQALADEYGVKFFETSAKNNINVESGFIEIANEVKTRLMEEGGPH 183
BLAST of EWM27640.1 vs. NCBI_GenBank
Match: gi|698788636|ref|XP_009827350.1| (hypothetical protein H257_04507 [Aphanomyces astaci] >gi|574118439|gb|ETV83920.1| hypothetical protein H257_04507 [Aphanomyces astaci]) HSP 1 Score: 328.176 bits (840), Expect = 9.478e-111 Identity = 158/207 (76.33%), Postives = 179/207 (86.47%), Query Frame = 0
Query: 1 MARQENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGRRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVSTEEGQSLANDFGIQFFETSAKNDINVEKSFVTIAREVKNRMLVDGGPRATGGKAI-VDAKRSNEAKKCWSRG 206
MAR ENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFK+KN++LDG++IKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDR SF SIRNWVGQIQQHADVHVNKIL+GNKCDM +VVSTEEGQ+LA+++GI+FFETSAKN+INVE F+ IA EVK R++ +GGP + + K SN+ K + G
Sbjct: 1 MARNENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKVKNIDLDGKKIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRASFNSIRNWVGQIQQHADVHVNKILVGNKCDMLDDKVVSTEEGQALADEYGIKFFETSAKNNINVEGGFIEIANEVKTRLMEEGGPHKKNDLVVNLGKKGSNDPTKAGNGG 207
BLAST of EWM27640.1 vs. NCBI_GenBank
Match: gi|223997470|ref|XP_002288408.1| (rab-type small G protein, partial [Thalassiosira pseudonana CCMP1335] >gi|223998436|ref|XP_002288891.1| rab-type small GTPase, partial [Thalassiosira pseudonana CCMP1335] >gi|220975516|gb|EED93844.1| rab-type small G protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220975999|gb|EED94327.1| rab-type small GTPase, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 322.398 bits (825), Expect = 5.739e-109 Identity = 152/178 (85.39%), Postives = 166/178 (93.26%), Query Frame = 0
Query: 4 QENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGRRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVSTEEGQSLANDFGIQFFETSAKNDINVEKSFVTIAREVKNRMLVDGG 181
Q P+DMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKN+E+DG+RIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNW+ QIQQHADVHVNKIL+GNKCDM ++VVSTEEGQ LA +FG+ FFE SAKNDINVE+SF+ IAR VK+RM+ DGG
Sbjct: 3 QAAPYDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNVEVDGKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWISQIQQHADVHVNKILVGNKCDMLDEKVVSTEEGQKLAKEFGVDFFECSAKNDINVEQSFLGIARSVKDRMVKDGG 180 The following BLAST results are available for this feature:
BLAST of EWM27640.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|