EWM27640.1, cds3018 (CDS) Nannochloropsis gaditana

Overview
NameEWM27640.1
Unique Namecds3018
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:520627..520760 -
Alignment locationCM002460.1:519910..520382 -
Alignment locationCM002460.1:519703..519864 -
Alignment locationCM002460.1:519525..519643 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27640.1
Productrab gtpase
Orig transcript idgnl|cribi|Naga_100059g6.8045.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:520627..520760 -
CM002460.1supercontigCM002460.1:519910..520382 -
CM002460.1supercontigCM002460.1:519703..519864 -
CM002460.1supercontigCM002460.1:519525..519643 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0003924GTPase activity
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0015031protein transport
GO:0006913nucleocytoplasmic transport
GO:0006886intracellular protein transport
GO:0007165signal transduction
GO:0007264small GTPase mediated signal transduction
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
IPR003579Small_GTPase_Rab_type
IPR002041Ran_GTPase
IPR020849Small_GTPase_Ras
IPR003578Small_GTPase_Rho
IPR001806Small_GTPase
Homology
BLAST of EWM27640.1 vs. NCBI_GenBank
Match: gi|585109910|gb|EWM27640.1| (rab gtpase [Nannochloropsis gaditana])

HSP 1 Score: 612.068 bits (1577), Expect = 0.000e+0
Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 0
Query:    1 MARQENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGRRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVSTEEGQSLANDFGIQFFETSAKNDINVEKSFVTIAREVKNRMLVDGGPRATGGKAIVDAKRSNEAKKCWSRGWNEGVGRHVRCGGRGSNRLSRAKRVTKRYVRYSEGACLPCLCLGAGRKATDEGFYHPKRNLTIPKGIHKGHCCIGGRSLFRGLLMASAL 295
            MARQENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGRRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVSTEEGQSLANDFGIQFFETSAKNDINVEKSFVTIAREVKNRMLVDGGPRATGGKAIVDAKRSNEAKKCWSRGWNEGVGRHVRCGGRGSNRLSRAKRVTKRYVRYSEGACLPCLCLGAGRKATDEGFYHPKRNLTIPKGIHKGHCCIGGRSLFRGLLMASAL
Sbjct:    1 MARQENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGRRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVSTEEGQSLANDFGIQFFETSAKNDINVEKSFVTIAREVKNRMLVDGGPRATGGKAIVDAKRSNEAKKCWSRGWNEGVGRHVRCGGRGSNRLSRAKRVTKRYVRYSEGACLPCLCLGAGRKATDEGFYHPKRNLTIPKGIHKGHCCIGGRSLFRGLLMASAL 295          
BLAST of EWM27640.1 vs. NCBI_GenBank
Match: gi|301117946|ref|XP_002906701.1| (Rab8 family GTPase, putative [Phytophthora infestans T30-4] >gi|262108050|gb|EEY66102.1| Rab8 family GTPase, putative [Phytophthora infestans T30-4])

HSP 1 Score: 335.495 bits (859), Expect = 1.133e-113
Identity = 156/183 (85.25%), Postives = 173/183 (94.54%), Query Frame = 0
Query:    1 MARQENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGRRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVSTEEGQSLANDFGIQFFETSAKNDINVEKSFVTIAREVKNRMLVDGGPR 183
            MAR ENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKN+ELD +++KLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDR SF+SIRNWVGQIQQHADVHVNKILIGNKCDMT  +VVSTEEGQ+LA+++G++FFETSAKN+INVE  F+ IAREVKNR++ +GGP 
Sbjct:    1 MARHENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNIELDNKKVKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRASFQSIRNWVGQIQQHADVHVNKILIGNKCDMTDDKVVSTEEGQALADEYGVKFFETSAKNNINVEGGFIEIAREVKNRLMEEGGPH 183          
BLAST of EWM27640.1 vs. NCBI_GenBank
Match: gi|675197121|ref|XP_008907445.1| (hypothetical protein PPTG_13487 [Phytophthora parasitica INRA-310] >gi|675197123|ref|XP_008907446.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|695376364|ref|XP_009515766.1| hypothetical protein PHYSODRAFT_353544 [Phytophthora sojae] >gi|348688677|gb|EGZ28491.1| hypothetical protein PHYSODRAFT_353544 [Phytophthora sojae] >gi|566020914|gb|ETI43825.1| hypothetical protein F443_11412 [Phytophthora parasitica P1569] >gi|566020915|gb|ETI43826.1| hypothetical protein, variant [Phytophthora parasitica P1569] >gi|567958205|gb|ETK83797.1| hypothetical protein L915_11102 [Phytophthora parasitica] >gi|567958206|gb|ETK83798.1| hypothetical protein, variant [Phytophthora parasitica] >gi|567986898|gb|ETL37213.1| hypothetical protein L916_11000 [Phytophthora parasitica] >gi|567986899|gb|ETL37214.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568016268|gb|ETL90445.1| hypothetical protein L917_10909 [Phytophthora parasitica] >gi|568046644|gb|ETM43749.1| hypothetical protein L914_10935 [Phytophthora parasitica] >gi|568046645|gb|ETM43750.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568092260|gb|ETN07069.1| hypothetical protein PPTG_13487 [Phytophthora parasitica INRA-310] >gi|568092261|gb|ETN07070.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|570324553|gb|ETO72501.1| hypothetical protein F444_11482 [Phytophthora parasitica P1976] >gi|570324554|gb|ETO72502.1| hypothetical protein, variant [Phytophthora parasitica P1976] >gi|570948379|gb|ETP13636.1| hypothetical protein F441_11329 [Phytophthora parasitica CJ01A1] >gi|570948380|gb|ETP13637.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1] >gi|570981225|gb|ETP41699.1| hypothetical protein F442_11297 [Phytophthora parasitica P10297] >gi|570981226|gb|ETP41700.1| hypothetical protein, variant [Phytophthora parasitica P10297] >gi|970616752|gb|KUF64898.1| Ras-related protein Rab-8A [Phytophthora nicotianae] >gi|970658642|gb|KUF96380.1| hypothetical protein AM588_10011375 [Phytophthora nicotianae])

HSP 1 Score: 334.724 bits (857), Expect = 1.662e-113
Identity = 156/183 (85.25%), Postives = 173/183 (94.54%), Query Frame = 0
Query:    1 MARQENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGRRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVSTEEGQSLANDFGIQFFETSAKNDINVEKSFVTIAREVKNRMLVDGGPR 183
            MAR ENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKN+ELD +++KLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDR SF+SIRNWVGQIQQHADVHVNKILIGNKCDMT  +VVSTEEGQ+LA+++G++FFETSAKN+INVE  F+ IAREVKNR++ +GGP 
Sbjct:    1 MARHENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNIELDNKKVKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRASFQSIRNWVGQIQQHADVHVNKILIGNKCDMTDDKVVSTEEGQALADEYGVKFFETSAKNNINVEGGFIEIAREVKNRLMEEGGPH 183          
BLAST of EWM27640.1 vs. NCBI_GenBank
Match: gi|669157376|ref|XP_008614250.1| (rab family, other [Saprolegnia diclina VS20] >gi|530734067|gb|EQC32309.1| rab family, other [Saprolegnia diclina VS20] >gi|1173934109|gb|OQR85584.1| Rab8 family GTPase [Achlya hypogyna])

HSP 1 Score: 331.257 bits (848), Expect = 5.623e-112
Identity = 153/183 (83.61%), Postives = 170/183 (92.90%), Query Frame = 0
Query:    1 MARQENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGRRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVSTEEGQSLANDFGIQFFETSAKNDINVEKSFVTIAREVKNRMLVDGGPR 183
            MAR ENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFK+KN+ELDG++IKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDR SF SIRNWVGQIQQHADVHVNKIL+GNKCDM   +VVSTEEGQ+LA+++G++FFETSAKN+INVE  F+ IA EVK R++ +GGP 
Sbjct:    1 MARNENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKVKNIELDGKKIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRASFNSIRNWVGQIQQHADVHVNKILVGNKCDMLDDKVVSTEEGQALADEYGVKFFETSAKNNINVESGFIEIANEVKTRLMEEGGPH 183          
BLAST of EWM27640.1 vs. NCBI_GenBank
Match: gi|325179736|emb|CCA14139.1| (Rab8 family GTPase putative [Albugo laibachii Nc14])

HSP 1 Score: 331.257 bits (848), Expect = 7.601e-112
Identity = 154/181 (85.08%), Postives = 172/181 (95.03%), Query Frame = 0
Query:    1 MARQENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGRRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVSTEEGQSLANDFGIQFFETSAKNDINVEKSFVTIAREVKNRMLVDGG 181
            MAR ENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKN+ELDG++IKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDR SF+SIRNWVGQIQQHADVHVNKILIGNKCDM   +V+STEEGQ+LA+++G++F+ETSAKN+INVE  F+ IAREVKNR++ +GG
Sbjct:   18 MARHENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNIELDGKKIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRASFQSIRNWVGQIQQHADVHVNKILIGNKCDMMDDKVISTEEGQALADEYGVRFYETSAKNNINVEGGFIDIAREVKNRLMEEGG 198          
BLAST of EWM27640.1 vs. NCBI_GenBank
Match: gi|673036300|ref|XP_008872111.1| (hypothetical protein H310_08215 [Aphanomyces invadans] >gi|574472550|gb|ETV99555.1| hypothetical protein H310_08215 [Aphanomyces invadans])

HSP 1 Score: 330.487 bits (846), Expect = 1.061e-111
Identity = 156/206 (75.73%), Postives = 178/206 (86.41%), Query Frame = 0
Query:    1 MARQENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGRRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVSTEEGQSLANDFGIQFFETSAKNDINVEKSFVTIAREVKNRMLVDGGPRATGGKAIVDAKRSNEAKKCWSRG 206
            MAR ENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFK+KN++LDG++IKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDR SF SIRNWVGQIQQHADVHVNKIL+GNKCDM   +VVSTEEGQ+LA+++G++FFETSAKN+INVE  F+ IA EVK R++ +GGP       +   K+ N+  K  + G
Sbjct:    1 MARNENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKVKNIDLDGKKIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRASFNSIRNWVGQIQQHADVHVNKILVGNKCDMLDDKVVSTEEGQALADEYGVKFFETSAKNNINVEGGFIEIANEVKTRLMEEGGPHKKSDLVVNLGKKGNDPTKASNGG 206          
BLAST of EWM27640.1 vs. NCBI_GenBank
Match: gi|813208884|ref|XP_012210283.1| (hypothetical protein SPRG_15745 [Saprolegnia parasitica CBS 223.65] >gi|641524396|gb|KDO18996.1| hypothetical protein SPRG_15745 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 329.717 bits (844), Expect = 1.915e-111
Identity = 152/183 (83.06%), Postives = 170/183 (92.90%), Query Frame = 0
Query:    1 MARQENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGRRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVSTEEGQSLANDFGIQFFETSAKNDINVEKSFVTIAREVKNRMLVDGGPR 183
            MAR ENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFK+KN++LDG++IKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDR SF SIRNWVGQIQQHADVHVNKIL+GNKCDM   +VVSTEEGQ+LA+++G++FFETSAKN+INVE  F+ IA EVK R++ +GGP 
Sbjct:    1 MARNENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKVKNIDLDGKKIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRASFNSIRNWVGQIQQHADVHVNKILVGNKCDMLDDKVVSTEEGQALADEYGVKFFETSAKNNINVESGFIEIANEVKTRLMEEGGPH 183          
BLAST of EWM27640.1 vs. NCBI_GenBank
Match: gi|1173927282|gb|OQR81313.1| (Rab8 family GTPase [Thraustotheca clavata])

HSP 1 Score: 329.331 bits (843), Expect = 2.518e-111
Identity = 152/183 (83.06%), Postives = 170/183 (92.90%), Query Frame = 0
Query:    1 MARQENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGRRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVSTEEGQSLANDFGIQFFETSAKNDINVEKSFVTIAREVKNRMLVDGGPR 183
            MAR ENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFK+KN++LDG++IKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDR SF SIRNWVGQIQQHADVHVNKIL+GNKCDM   +VVSTEEGQ+LA+++G++FFETSAKN+INVE  F+ IA EVK R++ +GGP 
Sbjct:    1 MARNENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKVKNIDLDGKKIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRASFNSIRNWVGQIQQHADVHVNKILVGNKCDMLDDKVVSTEEGQALADEYGVKFFETSAKNNINVESGFIEIANEVKTRLMEEGGPH 183          
BLAST of EWM27640.1 vs. NCBI_GenBank
Match: gi|698788636|ref|XP_009827350.1| (hypothetical protein H257_04507 [Aphanomyces astaci] >gi|574118439|gb|ETV83920.1| hypothetical protein H257_04507 [Aphanomyces astaci])

HSP 1 Score: 328.176 bits (840), Expect = 9.478e-111
Identity = 158/207 (76.33%), Postives = 179/207 (86.47%), Query Frame = 0
Query:    1 MARQENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGRRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVSTEEGQSLANDFGIQFFETSAKNDINVEKSFVTIAREVKNRMLVDGGPRATGGKAI-VDAKRSNEAKKCWSRG 206
            MAR ENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFK+KN++LDG++IKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDR SF SIRNWVGQIQQHADVHVNKIL+GNKCDM   +VVSTEEGQ+LA+++GI+FFETSAKN+INVE  F+ IA EVK R++ +GGP       + +  K SN+  K  + G
Sbjct:    1 MARNENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKVKNIDLDGKKIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRASFNSIRNWVGQIQQHADVHVNKILVGNKCDMLDDKVVSTEEGQALADEYGIKFFETSAKNNINVEGGFIEIANEVKTRLMEEGGPHKKNDLVVNLGKKGSNDPTKAGNGG 207          
BLAST of EWM27640.1 vs. NCBI_GenBank
Match: gi|223997470|ref|XP_002288408.1| (rab-type small G protein, partial [Thalassiosira pseudonana CCMP1335] >gi|223998436|ref|XP_002288891.1| rab-type small GTPase, partial [Thalassiosira pseudonana CCMP1335] >gi|220975516|gb|EED93844.1| rab-type small G protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220975999|gb|EED94327.1| rab-type small GTPase, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 322.398 bits (825), Expect = 5.739e-109
Identity = 152/178 (85.39%), Postives = 166/178 (93.26%), Query Frame = 0
Query:    4 QENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGRRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVSTEEGQSLANDFGIQFFETSAKNDINVEKSFVTIAREVKNRMLVDGG 181
            Q  P+DMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKN+E+DG+RIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNW+ QIQQHADVHVNKIL+GNKCDM  ++VVSTEEGQ LA +FG+ FFE SAKNDINVE+SF+ IAR VK+RM+ DGG
Sbjct:    3 QAAPYDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNVEVDGKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWISQIQQHADVHVNKILVGNKCDMLDEKVVSTEEGQKLAKEFGVDFFECSAKNDINVEQSFLGIARSVKDRMVKDGG 180          
The following BLAST results are available for this feature:
BLAST of EWM27640.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109910|gb|EWM27640.1|0.000e+0100.00rab gtpase [Nannochloropsis gaditana][more]
gi|301117946|ref|XP_002906701.1|1.133e-11385.25Rab8 family GTPase, putative [Phytophthora infesta... [more]
gi|675197121|ref|XP_008907445.1|1.662e-11385.25hypothetical protein PPTG_13487 [Phytophthora para... [more]
gi|669157376|ref|XP_008614250.1|5.623e-11283.61rab family, other [Saprolegnia diclina VS20] >gi|5... [more]
gi|325179736|emb|CCA14139.1|7.601e-11285.08Rab8 family GTPase putative [Albugo laibachii Nc14... [more]
gi|673036300|ref|XP_008872111.1|1.061e-11175.73hypothetical protein H310_08215 [Aphanomyces invad... [more]
gi|813208884|ref|XP_012210283.1|1.915e-11183.06hypothetical protein SPRG_15745 [Saprolegnia paras... [more]
gi|1173927282|gb|OQR81313.1|2.518e-11183.06Rab8 family GTPase [Thraustotheca clavata][more]
gi|698788636|ref|XP_009827350.1|9.478e-11176.33hypothetical protein H257_04507 [Aphanomyces astac... [more]
gi|223997470|ref|XP_002288408.1|5.739e-10985.39rab-type small G protein, partial [Thalassiosira p... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3026rna3026Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications