rna3024, rna3024 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3024
Unique Name	rna3024
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2623
Alignment location	CM002460.1:515788..517204 +

Link to JBrowse

Properties


Property Name	Value
Product	SEC-C motif-containing protein
Orig transcript id	gnl\|cribi\|Naga_100059g4.8064.mrna
Orig protein id	gnl\|cribi\|Naga_100059g4.8064
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:515788..517204 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100059g4	gene2903	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3024	rna3024-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27659.1	cds3016	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:515788..517204+
coding sequence from alignment at CM002460.1:515788..517204+

mRNA sequence

>rna3024 ID=rna3024|Name=rna3024|organism=Nannochloropsis gaditana|type=mRNA|length=2623bp
AGTGAGCTACAAGGTAACCACCCGTGCCACCCTTCAACATGAGAAGAAAC
CTTGAGATTTTGAAGAATCAAATTATCACCAAATTCGAGATTTAAAGATG
TGCATATTTTCACCCAGGCATGCTGCCTTCAGCATCACTTTCGTCTCGAC
ATGGCGGCCATGGACCTCTAACATGGACACTCAGAAGCTTACGATCCCAA
CGACCTAGACAATTGTCGAGCCATCTTGCCAGCGCTGTAAACATAAAATG
GGCGAAGAGGGGTTTTTCGCACATGGACAAGATTTTTGTATCTTTGTGTG
GTCATGGTGCTCAAATCTTGCGGCAGTGCGCTTGCAGGGCCGCCTCATCG
TCGCGTATGGACGTGCATGTGGCGTTTTCTGACCTGCCCCCCCGTTGCTA
CCATACAAAGCGTGCCTTCGCGACGTTACATTCACCATTTCCAAGTAATG
AATCACTTGTCACCTCACGGGTCGTCGTCGAAGAAGTCCCAACAGTGAGA
TCGGAAAACATGCGATTGCTTGCGCTGAAACGTTCAAGCAATCCAGCGGA
AATCGTTAAGATCGTGACAAATGCATGGGTGGCCGCCGAAGCACCAAACG
AATTTAGCTACAGCCTTGCTATGAATGCATGTGCACAAATGTGTAATTAT
CAGCAGGCCTGGGAGTTGCTGCGGCGGGCGGAGACAACTCATAGGATCAC
TCCTTCCGAATGGATGTGGGGTGCGCTCTTATCCGCTTGCGTTCGGGCTC
GCCGTCTAGATGAAGTGCTCAAGGTGATAAATAGCATGAAAAGTAGGGGT
GTTAGGATGAATGCGCACTTTGTGGCCCAACTTGTTGATGCATACGGCCG
CGAAGGGGATTGGAAGGGGGCATTGTTGGCGTTCGAAAGCCACAAAGCGG
ACTTGCTGCGGCAGTATGCGGGACGCTCTGGCCACGAGAAAAGATCACTA
ACTGTTTGCTTTACGACCCTCATCACTGCACTGGGCCGGGGCCGACAATG
GGAACGAGCTCGTGACGTTCTGTTGACAGAAATGCCTCGTGAGAGTGTGT
CCCCTGACCTGGTTGCCTACGGAAGCGTCATGCATTCTTGTGGGCGGGCA
AGGCAGTGGAGGGAGGTGTTGGCCCTCTTCAACCATCTCCAGTCCCAAGC
TGAGCTCGAACCCTCCAACGTCATTATTCATTTCGTGCTGCATGCCTATT
ATTGGAGCGACGCTGCCAGCTGGCGGGGCGCGGTTCACCTTTTCAACGAC
ATGGAACAGGGCAAATACGCACGGGCACGCCCCACCGCCCCTATCTGTCG
GACTTTCTTTAAAGTGCTTGGAAAATTTGCCCCGGCCGCAGAGGCTCACG
CGTTTTATAACAAGCTCCCTGCGTCGTACAAGAACTTGACCACGATCGCT
GCTGATGTCCTGCTCGCCTACGCTAACGAGAAGGACGGCAAGGGTGCTCT
CACCTTCTTGCAGCACCTTCGCGAACACGGTCCAGAGCCGGACGGAATCT
GCCTCTCGAATGTTGTGCTAGCATGCGGGAGGGCGGGCTTGATGGAGGAT
GCACAGGCGCTTCTCCAGGAAGCTCGGCAATCCAGCCCTTTTGGAGGGTC
GAAATCCGCCTGCCTCTTGGACAAAATGAGCAAAGTTGAGGCATTTGAAG
AAGCGACGGCTTTCTACTCTGCCATCACCCATACCATTCCAGATCACCCT
GGGGCGATGCCGCCACCCGTGGCCATGAACACGGGCCTCCACGTTTTTTG
CAATGTCGGGGATTGGGAGAGCGCCGTCAAAGTTCTCCGACAAATGGCGT
CCGGCGGTGTGCAACCCATCGAGGCAAACCGTGCATCTATACTGTTGGCT
TCTAGCTCGGCGGGGCAGTGGCCTGTGGCGACTTATTTGCTCGAGGAGGG
GGCTTTTCTGCGCCTTAAGAACGTGGGAACCAGCGGCTTTGAGGCTTGGG
CGCAAGGGGTGGAGGACGGCATTCTCACGGCTTTCGGACCGGCTTTATAC
AGGCAGCTGCAGCAGCAGGGACTTGTTGATCATACTCATAAAGAAAGTGA
GGCAGCGAAGAACGTGAAGGTGGTGGACTTTCATGGCCTGGGAGCCCGTC
AGTGCGTATGTGCCATACTGACCTTGTTGCAAGATTTGGAAAATGCGGAG
GCACTGAAGGCTGCGAAAAAGCGGCCGTTGCGCAGTAGAAGTCATGAACA
GGTCGCATCTAAATATGGTACATTGGTGCCCAAGAATGAGAACGAACTCT
TTCACGGTCACCGAAATGGCAGGGACTTTGCTTCAACAGATGAACGTGAT
CCCGTTCCCAGCATTGTGATGGTCGTGGGTCGAGGTAAGCATAGCGTTGC
AGGTGTTAGCATCTTATACCCCTCCATTTCAAAGGCTCTAGCGACGCCTT
CTCTATTCGAGCCTCCAATGAATGCGCGACCAGTGCCCAACAACCCGGGG
CGGATAGTCTTGTCGCGACAGGAGGTGAAAAAGTACATCGACGCACAACT
AAGCCGACGCTAAAAGCAAATGATTATGGATCAACGTTGACCACGTCAAT
AGTCTAGAGTAGTATGATAGAAACTGTAACTTTGTAAATGGGAAAAAGAA
TAAATGCAACATGTTAGTAAAGC

protein sequence of rna3024

>rna3024-protein ID=rna3024-protein|Name=rna3024|organism=Nannochloropsis gaditana|type=polypeptide|length=345bp
MGKRGPGLVRRKGNMGSHSRKDEYITAPEGRWNGGKQQKQKGKRFDKDEE
QRFMQHVEDLGARILTMDSDGNCLFRALADQLRGRPEDHGEIRQHVIDFI
EAHETDFAPFVEDDEKFSDYVHRMRNEGEWGGQQEICAASRCFHVNVVIH
QLDCPRFEILFKASAPTIHLSFHGASHYNSIRAWDDPCRMGDPAKPFLAL
TALPLSTSKTSTLTSFSSSPSLAPHRREGKSIPGAEIKERGDEDDELRRK
TRKEMADISDESDGSIDRDEPRATEEKVLKRGGQCPCRSGKKWRKCCRKV
ERQRQRHIHHMNGYNAMRHEQVHEEHVKNGIGEEKLAVRLAAISL

mRNA from alignment at CM002460.1:515788..517204+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3024 ID=rna3024|Name=rna3024|organism=Nannochloropsis gaditana|type=mRNA|length=1417bp|location=Sequence derived from alignment at CM002460.1:515788..517204+ (Nannochloropsis gaditana)
GTGCTTTATGTAAAGCTCTCAATCGTCCACACACACGATTACAAATAAAC
AGGGCGTGATTATGGAAGTCGTATTCGCAAGTATGTGACAATTTGACTGA
TTTATCTCAGAAACATCTTGATAAATTCCAAGTCTCCATCTTCAGCCTTT
CTTTTCGAGCTCAAAGCTGAGCTTTCCTGCCGCTCTCCTGCTGTGATAGC
CGACATGGGGAAGCGAGGCCCAGGACTTGTCCGCCGTAAAGGAAATATGG
GTAGCCACAGTCGTAAGGACGAGTACATAACGGCGCCCGAGGGTCGCTGG
AATGGAGGAAAACAACAGGTAACGACCTTCCTGCACCTTACAGCAATTTA
CGACTTTCCATGAGTGTCAACTTTCAAAAATCTGGAGCGATGTAGGACTT
TCTTACCTTGAAAGCTTCGACACAAAACCCGCCTTTTCAACGTCGCGCAC
ACACATTCCAGAaacagaaaggaaagcgattcgacaaagacgaggagcaa
AGGTTTATGCAACATGTCGAGGATCTTGGTGCACGAATTTTGACCATGGA
CTCAGACGGAAATTGTCTCTTTCGAGCTTTGGCTGACCAATTGCGGGGAC
GGCCCGAGGATCATGGGGAAATTCGTCAACACGTCATCGACTTCATAGAA
GCACATGAAACAGATTTTGCGCCATTTGTGGAGGACGATGAGAAATTCTC
AGATTATGTACATAGGATGCGGAACGAAGGAGAGTGGGGAGGTCAGCAAG
AGATATGTGCTGCCAGTCGTTGTTTTCACGTCAACGTAGTCATTCATCAG
CTAGACTGCCCACGCTTTGAAATTCTCTTCAAAGCTAGCGCGCCAACCAT
TCATCTATCTTTCCACGGCGCTTCTCATTATAACAGCATTCGTGCATGGG
ATGATCCCTGCCGGATGGGAGATCCTGCAAAGCCCTTTCTGGCTCTGACT
GCCTTACCCCTCTCGACGTCAAAAACTTCAACACTCacatccttctcttc
ttcaccTTCCTTGGCGCCACatcgacgggagggaaaatcGATACCGGGTG
CAGAGATCAAAGAGCGAGGTGACGAAGATGATGAATTACGTAGAAAGACG
CGCAAGGAAATGGCAGATATCAGCGATGAGTCGGACGGCAGTATTGACCG
TGACGAGCCTCGGGCAACAGAAGAGAAAGTCTTGAAAAGGGGCGGTCAGT
GTCCGTGTCGATCTGGAAAGAAGTGGCGGAAGTGCTGTCGCAAAGTTGAG
AGACAACGGCAGCGTCACATTCACCACATGAATGGATATAATGCAATGAG
GCACGAACAGGTCCATGAAGAACATGTAAAAAATGGCATCGGAGAAGAAA
AACTAGCTGTCAGACTAGCCGCCATCTCACTGTAAGATATAAAGAAAGAC
CAATGCAACGTCATTTA

Coding sequence (CDS) from alignment at CM002460.1:515788..517204+

>rna3024 ID=rna3024|Name=rna3024|organism=Nannochloropsis gaditana|type=CDS|length=2076bp|location=Sequence derived from alignment at CM002460.1:515788..517204+ (Nannochloropsis gaditana)
ATGGGGAAGCGAGGCCCAGGACTTGTCCGCCGTAAAGGAAATATGGGTAG
CCACAGTCGTAAGGACGAGTACATAACGGCGCCCGAGGGTCGCTGGAATG
GAGGAAAACAACAGAaacagaaaggaaagcgattcgacaaagacgaggag
caaAGGTTTATGCAACATGTCGAGGATCTTGGTGCACGAATTTTGACCAT
GGACTCAGACGGAAATTGTCTCTTTCGAGCTTTGGCTGACCAATTGCGGG
GACGGCCCGAGGATCATGGGGAAATTCGTCAACACGTCATCGACTTCATA
GAAGCACATGAAACAGATTTTGCGCCATTTGTGGAGGACGATGAGAAATT
CTCAGATTATGTACATAGGATGCGGAACGAAGGAGAGTGGGGAGGTCAGC
AAGAGATATGTGCTGCCAGTCGTTGTTTTCACGTCAACGTAGTCATTCAT
CAGCTAGACTGCCCACGCTTTGAAATTCTCTTCAAAGCTAGCGCGCCAAC
CATTCATCTATCTTTCCACGGCGCTTCTCATTATAACAGCATTCGTGCAT
GGGATGATCCCTGCCGGATGGGAGATCCTGCAAAGCCCTTTCTGGCTCTG
ACTGCCTTACCCCTCTCGACGTCAAAAACTTCAACACTCacatccttctc
ttcttcaccTTCCTTGGCGCCACatcgacgggagggaaaatcGATACCGG
GTGCAGAGATCAAAGAGCGAGGTGACGAAGATGATGAATTACGTAGAAAG
ACGCGCAAGGAAATGGCAGATATCAGCGATGAGTCGGACGGCAGTATTGA
CCGTGACGAGCCTCGGGCAACAGAAGAGAAAGTCTTGAAAAGGGGCGGTC
AGTGTCCGTGTCGATCTGGAAAGAAGTGGCGGAAGTGCTGTCGCAAAGTT
GAGAGACAACGGCAGCGTCACATTCACCACATGAATGGATATAATGCAAT
GAGGCACGAACAGGTCCATGAAGAACATGTAAAAAATGGCATCGGAGAAG
AAAAACTAGCTGTCAGACTAGCCGCCATCTCACTGTAAATGGGGAAGCGA
GGCCCAGGACTTGTCCGCCGTAAAGGAAATATGGGTAGCCACAGTCGTAA
GGACGAGTACATAACGGCGCCCGAGGGTCGCTGGAATGGAGGAAAACAAC
AGAaacagaaaggaaagcgattcgacaaagacgaggagcaaAGGTTTATG
CAACATGTCGAGGATCTTGGTGCACGAATTTTGACCATGGACTCAGACGG
AAATTGTCTCTTTCGAGCTTTGGCTGACCAATTGCGGGGACGGCCCGAGG
ATCATGGGGAAATTCGTCAACACGTCATCGACTTCATAGAAGCACATGAA
ACAGATTTTGCGCCATTTGTGGAGGACGATGAGAAATTCTCAGATTATGT
ACATAGGATGCGGAACGAAGGAGAGTGGGGAGGTCAGCAAGAGATATGTG
CTGCCAGTCGTTGTTTTCACGTCAACGTAGTCATTCATCAGCTAGACTGC
CCACGCTTTGAAATTCTCTTCAAAGCTAGCGCGCCAACCATTCATCTATC
TTTCCACGGCGCTTCTCATTATAACAGCATTCGTGCATGGGATGATCCCT
GCCGGATGGGAGATCCTGCAAAGCCCTTTCTGGCTCTGACTGCCTTACCC
CTCTCGACGTCAAAAACTTCAACACTCacatccttctcttcttcaccTTC
CTTGGCGCCACatcgacgggagggaaaatcGATACCGGGTGCAGAGATCA
AAGAGCGAGGTGACGAAGATGATGAATTACGTAGAAAGACGCGCAAGGAA
ATGGCAGATATCAGCGATGAGTCGGACGGCAGTATTGACCGTGACGAGCC
TCGGGCAACAGAAGAGAAAGTCTTGAAAAGGGGCGGTCAGTGTCCGTGTC
GATCTGGAAAGAAGTGGCGGAAGTGCTGTCGCAAAGTTGAGAGACAACGG
CAGCGTCACATTCACCACATGAATGGATATAATGCAATGAGGCACGAACA
GGTCCATGAAGAACATGTAAAAAATGGCATCGGAGAAGAAAAACTAGCTG
TCAGACTAGCCGCCATCTCACTGTAA

Synonyms

Publications