EWM27659.1, cds3016 (CDS) Nannochloropsis gaditana

Overview
NameEWM27659.1
Unique Namecds3016
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:515992..516105 +
Alignment locationCM002460.1:516249..517172 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27659.1
ProductSEC-C motif-containing protein
Orig transcript idgnl|cribi|Naga_100059g4.8064.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:515992..516105 +
CM002460.1supercontigCM002460.1:516249..517172 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR003323OTU_dom
IPR004027SEC_C_motif
Homology
BLAST of EWM27659.1 vs. NCBI_GenBank
Match: gi|585109929|gb|EWM27659.1| (SEC-C motif-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 717.613 bits (1851), Expect = 0.000e+0
Identity = 345/345 (100.00%), Postives = 345/345 (100.00%), Query Frame = 0
Query:    1 MGKRGPGLVRRKGNMGSHSRKDEYITAPEGRWNGGKQQKQKGKRFDKDEEQRFMQHVEDLGARILTMDSDGNCLFRALADQLRGRPEDHGEIRQHVIDFIEAHETDFAPFVEDDEKFSDYVHRMRNEGEWGGQQEICAASRCFHVNVVIHQLDCPRFEILFKASAPTIHLSFHGASHYNSIRAWDDPCRMGDPAKPFLALTALPLSTSKTSTLTSFSSSPSLAPHRREGKSIPGAEIKERGDEDDELRRKTRKEMADISDESDGSIDRDEPRATEEKVLKRGGQCPCRSGKKWRKCCRKVERQRQRHIHHMNGYNAMRHEQVHEEHVKNGIGEEKLAVRLAAISL 345
            MGKRGPGLVRRKGNMGSHSRKDEYITAPEGRWNGGKQQKQKGKRFDKDEEQRFMQHVEDLGARILTMDSDGNCLFRALADQLRGRPEDHGEIRQHVIDFIEAHETDFAPFVEDDEKFSDYVHRMRNEGEWGGQQEICAASRCFHVNVVIHQLDCPRFEILFKASAPTIHLSFHGASHYNSIRAWDDPCRMGDPAKPFLALTALPLSTSKTSTLTSFSSSPSLAPHRREGKSIPGAEIKERGDEDDELRRKTRKEMADISDESDGSIDRDEPRATEEKVLKRGGQCPCRSGKKWRKCCRKVERQRQRHIHHMNGYNAMRHEQVHEEHVKNGIGEEKLAVRLAAISL
Sbjct:    1 MGKRGPGLVRRKGNMGSHSRKDEYITAPEGRWNGGKQQKQKGKRFDKDEEQRFMQHVEDLGARILTMDSDGNCLFRALADQLRGRPEDHGEIRQHVIDFIEAHETDFAPFVEDDEKFSDYVHRMRNEGEWGGQQEICAASRCFHVNVVIHQLDCPRFEILFKASAPTIHLSFHGASHYNSIRAWDDPCRMGDPAKPFLALTALPLSTSKTSTLTSFSSSPSLAPHRREGKSIPGAEIKERGDEDDELRRKTRKEMADISDESDGSIDRDEPRATEEKVLKRGGQCPCRSGKKWRKCCRKVERQRQRHIHHMNGYNAMRHEQVHEEHVKNGIGEEKLAVRLAAISL 345          
BLAST of EWM27659.1 vs. NCBI_GenBank
Match: gi|298704741|emb|CBJ28337.1| (OTU domain-containing protein, putative [Ectocarpus siliculosus])

HSP 1 Score: 162.155 bits (409), Expect = 3.126e-43
Identity = 106/290 (36.55%), Postives = 141/290 (48.62%), Query Frame = 0
Query:   53 FMQHVEDLGARILTMDSDGNCLFRALADQLRGRPEDHGEIRQHVIDFIEAHETDFAPFVEDDEKFSDYVHRMRNEGEWGGQQEICAASRCFHVNVVIHQLDCPRFEILFKASAPTIHLSFHGASHYNSIRAWDDPCRMGDPAK-PFLALTALPLSTSKTSTLTSFSSSPSLAPHRREGKSIPGAEIKE----------RGDEDDELRRKTRKE--MADISDES-----------DGSIDRDEPR-------------------ATEEKVLKRGGQCPCRSGKKWRKCCRK 299
            F   VE +G +I  +  DGNCLFR+LADQL GR EDH  +R  V+D ++ +   F P++EDDE F DY+ RMR E EWGG QE+ AAS+ +  NVV+HQ   PRF I  + +  TIHLS+HG  HYNS+RA      +GD A  P L +T   L T  +   +    SP         +S P A              RGD+  EL    R E  + +  D +           DG    ++P+                       K + R   CPC SG K++KCCRK
Sbjct:   47 FEAQVEQIGCKIKFIQGDGNCLFRSLADQLEGRSEDHSSVRAKVMDHLQRNREVFEPYMEDDETFGDYLERMRGEAEWGGNQELVAASQLYKTNVVVHQFKAPRFFIPCEKARRTIHLSYHGEHHYNSVRA------IGDEANGPALPIT---LQTPTSKGGSHKRESPWPEEEAAVARSCPWASPPNIVAALETTGGRGDDAIELLIAARNEPGLEEGVDNTAGDKKGTGKLEDGGDSGEKPQENGRPGEGKGRGGGVAKKSEKAAKKVARASDCPCGSGLKYKKCCRK 327          
BLAST of EWM27659.1 vs. NCBI_GenBank
Match: gi|1004138158|gb|KXZ46175.1| (hypothetical protein GPECTOR_46g244 [Gonium pectorale])

HSP 1 Score: 151.369 bits (381), Expect = 3.488e-38
Identity = 72/159 (45.28%), Postives = 94/159 (59.12%), Query Frame = 0
Query:   36 KQQKQKGKRFDKDE------EQRFMQHVEDLGARILTMDSDGNCLFRALADQLRGRPEDHGEIRQHVIDFIEAHETDFAPFVEDDEKFSDYVHRMRNEGEWGGQQEICAASRCFHVNVVIHQLDCPRFEILFKA--SAPTIHLSFHGASHYNSIRAWDD 186
            K  K KGKR  K               +  LG RI  +  DGNC FRAL+DQL+G  + HG++R  V+ +I  H+ DFAPF+EDDE F  YV RMR +G W G  E+ AASRC   N+ I+Q   PR+ +L +   +AP +HLS+H   HYNS+R  DD
Sbjct:   36 KATKDKGKRAGKGAWHVSSGGDDLEAELASLGLRIKEIVGDGNCFFRALSDQLQGDEKSHGQLRARVVGYIGEHQDDFAPFIEDDESFGSYVARMRKDGTWAGYMEVVAASRCLEANLTIYQAGQPRWRVLSQPEDAAPMLHLSYHDGQHYNSVRCADD 194          
BLAST of EWM27659.1 vs. NCBI_GenBank
Match: gi|1052178425|ref|XP_017698107.1| (PREDICTED: OTU domain-containing protein 3 isoform X4 [Phoenix dactylifera])

HSP 1 Score: 141.739 bits (356), Expect = 9.173e-36
Identity = 90/269 (33.46%), Postives = 132/269 (49.07%), Query Frame = 0
Query:   39 KQKGKRFDKDEEQRFMQHVEDLGARILTMDSDGNCLFRALADQLRGRPEDHGEIRQHVIDFIEAHETDFAPFVEDDEKFSDYVHRMRNEGEWGGQQEICAASRCFHVNVVIHQLDCPRFEILFKAS--APTIHLSFHGASHYNSIRAWDDPCRMGDPAKPFLALTALPLSTSKTSTLTSFSSSPSLAPHRREGKSIPGAEIK-ERGDEDDELRRKTRKEMADISDESDGSIDRDEPRAT-------EEKVLKRGGQCPCRSGKKWRKCC 297
            KQ GK    D    F   ++ LG +I+ + +DGNC FRALADQL G  E+H + R  V+ +I  H  DF PF+EDD  F +Y   M  +G W G  E+ AAS     N+ IH+L  PR+ I   +S  A  IHL +H   HYNS+R  +D C    PAKP + +  L            F     L   +    ++  +E     GD+ +E+    + E A ++ + +  + R   +         E+K + R  +CPC S KK++ CC
Sbjct:   20 KQHGKL---DAVAEFRSQLDVLGLKIIQVTADGNCFFRALADQLEGNEEEHKKYRDMVVQYILNHREDFEPFIEDDVPFDEYCQSMEKDGTWAGHMELQAASLVTRRNICIHRLRSPRWYINNFSSHGASMIHLCYHDGEHYNSVRLKEDSCE--GPAKPII-IEVLQEVDGDVDAAVEF-----LIADQDSDDNVHASEDNVYHGDDQNEI--CGQPETASMNTKCEAGVARSNTQPVQSHSIQHEDKKIPRNKECPCGSKKKYKACC 275          
BLAST of EWM27659.1 vs. NCBI_GenBank
Match: gi|1052178423|ref|XP_017698106.1| (PREDICTED: OTU domain-containing protein 3 isoform X3 [Phoenix dactylifera])

HSP 1 Score: 140.584 bits (353), Expect = 2.760e-35
Identity = 90/270 (33.33%), Postives = 130/270 (48.15%), Query Frame = 0
Query:   39 KQKGKRFDKDEEQRFMQHVEDLGARILTMDSDGNCLFRALADQLRGRPEDHGEIRQHVIDFIEAHETDFAPFVEDDEKFSDYVHRMRNEGEWGGQQEICAASRCFHVNVVIHQLDCPRFEILFKAS--APTIHLSFHGASHYNSIRAWDDPCRMGDPAKPFLALTALPLSTSKTSTLTSFSSSPSLAPHRREGKSIPGAEIKERGD--EDDELRRKTRKEMADISDESDGSIDRDEPRAT-------EEKVLKRGGQCPCRSGKKWRKCC 297
            KQ GK    D    F   ++ LG +I+ + +DGNC FRALADQL G  E+H + R  V+ +I  H  DF PF+EDD  F +Y   M  +G W G  E+ AAS     N+ IH+L  PR+ I   +S  A  IHL +H   HYNS+R  +D C    PAKP + +  L            F     L   +    ++  +E     D   DD+     + E A ++ + +  + R   +         E+K + R  +CPC S KK++ CC
Sbjct:   20 KQHGKL---DAVAEFRSQLDVLGLKIIQVTADGNCFFRALADQLEGNEEEHKKYRDMVVQYILNHREDFEPFIEDDVPFDEYCQSMEKDGTWAGHMELQAASLVTRRNICIHRLRSPRWYINNFSSHGASMIHLCYHDGEHYNSVRLKEDSCE--GPAKPII-IEVLQEVDGDVDAAVEF-----LIADQDSDDNVHASEDNVYHDCPGDDQNEICGQPETASMNTKCEAGVARSNTQPVQSHSIQHEDKKIPRNKECPCGSKKKYKACC 278          
BLAST of EWM27659.1 vs. NCBI_GenBank
Match: gi|661894073|emb|CDP02514.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 138.658 bits (348), Expect = 3.708e-34
Identity = 97/314 (30.89%), Postives = 139/314 (44.27%), Query Frame = 0
Query:   39 KQKGKRFDKDEEQRFMQHVEDLGARILTMDSDGNCLFRALADQLRGRPEDHGEIRQHVIDFIEAHETDFAPFVEDDEKFSDYVHRMRNEGEWGGQQEICAASRCFHVNVVIHQLDCPRFEI--LFKASAPTIHLSFHGASHYNSIRAWDDPCRMGDPAKPFLALTALPLS-TSKTSTLTSFSSSPSLAPHRREGKSIPGAEIKERGDEDDELRRKTRKEMADISD-------------------------------ESDGSIDRDEPRATEEKV------------------LKRGGQCPCRSGKKWRKCCRKV 300
            K+ GK+ D  E   F Q ++ LG +I+ + +DGNC FRALADQL G  E+H + R  V+ FI  +   F PF+ED+  F +Y   M  +G W G  E+ AAS   H N+ IH+   PR+ I       A  IHLS+H   HYNS+R+ DD C    PA+P +      LS TS  +   +  S   +A +  + + +    +   G ED E  +K  +E+   +D                               E D  I   +    E+K                   + R   CPC S KK++ CCR V
Sbjct:   19 KKAGKQADISE---FKQQLDALGLKIIQVTADGNCFFRALADQLEGNEEEHEKYRNMVVRFIMKNREMFEPFIEDEVPFDEYCQSMEKDGTWAGHMELQAASLVTHCNICIHRHISPRWYIQNFDNCEAKMIHLSYHDGEHYNSVRSKDDTC--AGPARPIVIKADADLSATSHHAKSATTKSMGDIAGNNVQPRCLKMV-MTGSGCEDVEKVKKVLQEVGGDADAAIEYLIAQQNSEESLQENVQLYISENTVHGEHDSEILEQQSMQNEKKTGNTQMTQIENSLSLDDKKIPRNKACPCGSKKKYKSCCRSV 326          
BLAST of EWM27659.1 vs. NCBI_GenBank
Match: gi|224081718|ref|XP_002306480.1| (hypothetical protein POPTR_0005s18390g [Populus trichocarpa] >gi|222855929|gb|EEE93476.1| hypothetical protein POPTR_0005s18390g [Populus trichocarpa])

HSP 1 Score: 137.502 bits (345), Expect = 4.987e-34
Identity = 92/298 (30.87%), Postives = 137/298 (45.97%), Query Frame = 0
Query:   36 KQQKQKGKRFDKDEEQ-------RFMQHVEDLGARILTMDSDGNCLFRALADQLRGRPEDHGEIRQHVIDFIEAHETDFAPFVEDDEKFSDYVHRMRNEGEWGGQQEICAASRCFHVNVVIHQLDCPRFEI--LFKASAPTIHLSFHGASHYNSIRAWDDPCRMGDPAKPFLALTALPLSTSKTSTLTSFSSSPSLAPHRREGKSI------PGAEIKER---------GDEDDELRRKTRKEMADISDESDGSIDRDEPRATEE--------KVLKRGGQCPCRSGKKWRKCCRKVE 301
            KQQK K K+    ++Q       +F   ++ LG +I+ + +DGNC FR LADQL G  E+HG+ R  V+ +I      F PF+EDD  F +Y   M  +G W G  E+ AAS   H N+ +H+   PR+ I    +  A  +HLS+H   HYNS+R+ DDPC    PA+P +      LS +        S+   +A    +  S+       G E  E+         GD D  +     ++ +D     + S+  D   + E         K + R   C C S KK +  C  V+
Sbjct:    5 KQQKSKPKKTPHVKKQGKQANIVQFRAQLDALGLKIIEVTADGNCFFRGLADQLEGNEEEHGKYRSMVVQYIMNTREMFEPFIEDDVPFDEYCQLMEKDGTWAGHMELQAASLVTHSNICVHRYMSPRWYIRNFDQHGARMVHLSYHDEEHYNSVRSKDDPC--NGPAQPIIIKVDADLSATSVQAKAVSSTKAGIAKDSFDAGSLKLVMAGSGCENAEKVKQVLLEVDGDVDAAIEFLIAEQESDSFSAENNSLCSDTNISYENLMVLYTFRKKIPRNKDCSCGSKKKHKAYCGAVK 300          
BLAST of EWM27659.1 vs. NCBI_GenBank
Match: gi|971511706|dbj|GAQ86487.1| (hypothetical protein KFL_002920040 [Klebsormidium nitens])

HSP 1 Score: 137.887 bits (346), Expect = 7.611e-34
Identity = 66/147 (44.90%), Postives = 87/147 (59.18%), Query Frame = 0
Query:   53 FMQHVEDLGARILTMDSDGNCLFRALADQLRGRPEDHGEIRQHVIDFIEAHETDFAPFVEDDEKFSDYVHRMRNEGEWGGQQEICAASRCFHVNVVIHQLDCPRFEI--LFKASAPTIHLSFHGASHYNSIRAWDDPCRMGDPAKPF 197
            F + +  +G +I  + +DGNC FRA+ADQL G   DH   R+ V++++ AHE DFAPFVEDD     Y+  MR +G W G  E+ AAS     N+ IH++  PR+ I     A   TIHLS+H   HYNS+R  DDP   G PA P 
Sbjct:   63 FREQLRVIGLKIQEVTADGNCFFRAIADQLEGDAGDHVAYRERVVEYMAAHEADFAPFVEDDVPLEKYLQEMREDGTWAGNMELQAASLVTRANICIHRVQSPRWHIRNFDVAETRTIHLSYHDGEHYNSVRREDDPG--GGPALPI 207          
BLAST of EWM27659.1 vs. NCBI_GenBank
Match: gi|719970109|ref|XP_010270437.1| (PREDICTED: OTU domain-containing protein 3 isoform X3 [Nelumbo nucifera])

HSP 1 Score: 137.887 bits (346), Expect = 1.106e-33
Identity = 71/172 (41.28%), Postives = 96/172 (55.81%), Query Frame = 0
Query:   39 KQKGKRFDKDEEQRFMQHVEDLGARILTMDSDGNCLFRALADQLRGRPEDHGEIRQHVIDFIEAHETDFAPFVEDDEKFSDYVHRMRNEGEWGGQQEICAASRCFHVNVVIHQLDCPRFEI--LFKASAPTIHLSFHGASHYNSIRAWDDPCRMGDPAKPFLALTALPLSTS 208
            K++GK+ D  E   F   ++ LG +++ + +DGNC FRALADQL G  E+HG+ R  V+ +I  H  +F PF+EDD  F +Y   M  +G W G  E+ AAS     N+ IHQL  PR+ I          IHLS+H   HYNS+R  DD C    PAKP +      LS +
Sbjct:   18 KKQGKQSDLSE---FCSQLDALGLKVVQVTADGNCFFRALADQLEGNEEEHGKYRHMVVQYILKHREEFEPFIEDDIPFDEYCQSMEKDGTWAGHMELQAASLVTRSNICIHQLMSPRWYIRNFDNRGIRMIHLSYHNEEHYNSVRLKDDECN--GPAKPIVIKADAVLSAT 184          
BLAST of EWM27659.1 vs. NCBI_GenBank
Match: gi|567963045|gb|ETK88553.1| (hypothetical protein L915_07213 [Phytophthora parasitica] >gi|568020990|gb|ETL95099.1| hypothetical protein L917_07054 [Phytophthora parasitica] >gi|570953169|gb|ETP18426.1| hypothetical protein F441_07363 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 135.191 bits (339), Expect = 1.377e-33
Identity = 63/138 (45.65%), Postives = 89/138 (64.49%), Query Frame = 0
Query:   56 HVEDLGARILTMDSDGNCLFRALADQLRGRPEDHGEIRQHVIDFIEAHETDFAPFVEDDEKFSDYVHRMRNEGEWGGQQEICAASRCFHVNVVIHQLDCPRFEILFKAS---APT--IHLSFHGASHYNSIRAWDDPC 188
             + D+G ++  +++DGNCLFRAL DQL G    H E+R+ ++ ++E H  DF PF+ED+EKF  Y  RMR +G WGG QE+ AA+R F V VV+HQ D P   I+        PT  +H+++HG  HY+S+RA  DP 
Sbjct:   59 QLADVGCKLHEVEADGNCLFRALGDQLYGDQHQHEEVRKKIVSYLEQHRDDFEPFMEDEEKFEKYCERMREDGTWGGNQELYAAARLFQVYVVVHQ-DQPSARIMMIECDRLKPTRFVHVAYHGEDHYDSVRALKDPV 195          
The following BLAST results are available for this feature:
BLAST of EWM27659.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109929|gb|EWM27659.1|0.000e+0100.00SEC-C motif-containing protein [Nannochloropsis ga... [more]
gi|298704741|emb|CBJ28337.1|3.126e-4336.55OTU domain-containing protein, putative [Ectocarpu... [more]
gi|1004138158|gb|KXZ46175.1|3.488e-3845.28hypothetical protein GPECTOR_46g244 [Gonium pector... [more]
gi|1052178425|ref|XP_017698107.1|9.173e-3633.46PREDICTED: OTU domain-containing protein 3 isoform... [more]
gi|1052178423|ref|XP_017698106.1|2.760e-3533.33PREDICTED: OTU domain-containing protein 3 isoform... [more]
gi|661894073|emb|CDP02514.1|3.708e-3430.89unnamed protein product [Coffea canephora][more]
gi|224081718|ref|XP_002306480.1|4.987e-3430.87hypothetical protein POPTR_0005s18390g [Populus tr... [more]
gi|971511706|dbj|GAQ86487.1|7.611e-3444.90hypothetical protein KFL_002920040 [Klebsormidium ... [more]
gi|719970109|ref|XP_010270437.1|1.106e-3341.28PREDICTED: OTU domain-containing protein 3 isoform... [more]
gi|567963045|gb|ETK88553.1|1.377e-3345.65hypothetical protein L915_07213 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3024rna3024Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications