rna3018, rna3018 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3018
Unique Name	rna3018
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1026
Alignment location	CM002460.1:494181..496118 -

Link to JBrowse

Properties


Property Name	Value
Product	glutamyl-trna reductase
Orig transcript id	gnl\|cribi\|Naga_100125g4.432.mrna
Orig protein id	gnl\|cribi\|Naga_100125g4.432
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:494181..496118 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100125g4	gene2897	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27669.1	cds3010	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3018	rna3018-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:494181..496118-
coding sequence from alignment at CM002460.1:494181..496118-

mRNA sequence

>rna3018 ID=rna3018|Name=rna3018|organism=Nannochloropsis gaditana|type=mRNA|length=1026bp
ATGCCGACATCTCCTTTCTTCTCTGTTGTACAGGGCTTCCTGAATGGGAC
TGCTGAGCCTTATCAATGGGGAATTTTGGCCGGCTGTCTCGTCTACCTCA
CCGGAGTGGTGGTTGTCTTGTATTTGCTCGTCGCGGGTGGCTCTTTCGAG
CGAATGCGAGAACAGGCAGAGGCTTACAAGCAACTGGGTGTTAAGGCGCT
CCAAGTCCCACTCACAAGCAAGCCTCGCTTGTACGAAGCCCTGCTTGAGG
CTTCTCGATCCTTGCCTCGCAGACCACATTTAGATGAGGGGTGCCTACGG
GGGCGCGGCGTGGAGTTGAGGCTCATAGAAACTGGAGACGAGGTGCAAGC
AACGGATGAGAAGGGCGCACTGGCACGCACCTTGTTCGGGATAAGCGATG
GCTCCCCCCGTTACGGACATGGCGGCTATGACCCGATCGAGCAGATATGG
CGCTGGTTGCCAGAAAGCTTGGGTCCGCCCGAAGGGGCATCGGAAATGAG
GAAGTTTCTGGACAGGACGATGCGGGCGAGAGAGGCGGATAGCGCAACGT
TCTATGTGTTGGATCAGCCCTCAGGGTACGTCATAGGTATGGCCAGCATC
CTGGAGAACACGCCTACACATCTGCGGGCGGAAATCGGTGACATTTGGCT
GACGCCCGCGTTTCGAGGGACTTATGCGGGCTTGGAGGCGGGACAGCTTC
TTCTTCGATTCCTCTTCGAGACGCTAGGATACCGTCGGGTGGAATGGCGG
TGCGATGCAGACAATTACGCTGCACAGAAAGCTGCCGAGCGAATGGGATT
TGTCAAAGAAGGTCTTCTCCGTAAACACATGATTTGGCGGGAGGCGAATC
GTGATACTGTCTTGTATGCTCTTACAAATTCAGATTGGCGAGATTCTGCA
GCGAGTCAGATTGAGGCACGTCTGGAGAAGCTATTTGAAGATGTGAAGGG
ATTGCGAAAAACAGAAGCGAATGCAACGATAGGAACCGCAAGAGATGATT
CAGCGTCAGCAAAAAAAGACAAGTAA

protein sequence of rna3018

>rna3018-protein ID=rna3018-protein|Name=rna3018|organism=Nannochloropsis gaditana|type=polypeptide|length=645bp
MSCQRAEKFTLYAHTSLAGVRLPLYLLQKSAVRSLWDLSRGPIRSFAAYR
GRPISCTSVTMCPLRVFFALLQLHILCVFGLGGYASSAGDARATGRNCPF
RGWAVGKTSANTATSSCAFVAPSPPSRSAAALSSTTSEVAGPSSEGGFRT
SMGLFVAPTTGHTAHSLSRRRRVGPALKPLYAATVAAPTASIPADAIAAA
AEKKEKEANKKKRKATSMTPLEVHVIGLSHHNAAVEVREKLSIPEAQWNE
AANKLCESGVIAEACTLSTCNRFEIYFAAHDSYAAFHEATAFLERHSGLP
QSVLRKNLFLLSGEDAIWHLMRVSGGLDSLVVGEGQILSQVKQCYNHGME
EDGKGGKVISRMLNSAVAAGKRVRSETGISKGAVSISSAAVEFSQLRCPK
DLGKPFEDSRVAIVGAGKMSRLLMIHMASQGVKAVTLMNRGRERAETLAA
EFPEMEVAVRLMDDLWPVMHTHDVVYTSTSAQGCLLTKDNIQASGLAPGK
VIVDISVPRNVETEVSEIEGMFAYNVDHLKEVVDRNTAMRKKQMLEAEDL
LVEEMEKFRSWQFSLGAVPALMKLQEKAETMRMEELKKASKKLNNLSEKE
LQTVERLTKGIVNKLLHGPMSHLRATEDLEKNLVALKTLKAVFEL

mRNA from alignment at CM002460.1:494181..496118-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3018 ID=rna3018|Name=rna3018|organism=Nannochloropsis gaditana|type=mRNA|length=1938bp|location=Sequence derived from alignment at CM002460.1:494181..496118- (Nannochloropsis gaditana)
ATGTCATGCCAGCGCGCAGAAAAATTCACTCTATACGCACACACATCTCT
CGCAGGCGTAAGGCTACCTCTCTACCTGCTGCAAAAGTCCGCTGTGCGGT
CGCTGTGGGATTTGTCAAGAGGACCAATTCGCTCGTTTGCTGCTTACCGA
GGTCGACCAATCAGCTGCACTTCTGTCACCATGTGCCCCCTGCGCGTGTT
TTTCGCATTGCTTCAGCTCCATATCCTATGTGTTTTCGGCTTGGGAGGGT
ACGCCTCTTCTGCCGGAGACGCTCGGGCAACCGGCCGCAACTGTCCTTTC
CGGGGCTGGGCAGTGGGTAAGACCTCTGCAAACACAGCCACGAGTTCATG
TGCTTTCGTGGCACCATCCCCGCCTTCTCGCAGCGCAGCCGCGCTCTCAT
CGACCACAAGCGAGGTTGCGGGGCCGTCATCGGAAGGGGGTTTCCGGACC
TCCATGGGGCTGTTTGTGGCACCCACTACCGGACACACGGCGCACTCGTT
GTCCCGGAGGCGCCGCGTCGGCCCCGCGCTGAAGCCGCTCTACGCCGCCA
CTGTGGCTGCCCCGACTGCCAGCATCCCTGCAGATGCGATCGCGGCTGCA
GCGGAGAAAAAGGAGAAGGAGGCGAACAAGAAGAAGCGCAAGGCGACTTC
CATGACCCCCTTGGAAGTGCACGTGATCGGCCTTTCTCACCACAACGCGG
CGGTGGAGGTGCGGGAGAAGCTGTCCATCCCGGAGGCCCAGTGGAACGAG
GCGGCCAACAAGCTCTGCGAGAGCGGGGTCATAGCAGAGGCCTGCACGTT
GTCGACATGCAACCGCTTTGAGATCTACTTCGCGGCCCACGACTCGTACG
CCGCCTTCCACGAGGCCACCGCCTTCCTGGAGCGGCACTCGGGCCTGCCG
CAGAGCGTGCTGCGGAAGAACTTGTTCCTCCTGTCGGGAGAGGACGCGAT
CTGGCACCTGATGCGGGTCTCGGGGGGCCTGGACTCCCTGGTGGTGGGGG
AGGGACAGATCCTCAGCCAGGTGAAGCAGTGTTACAACCACGGAATGGAG
GAGGACGGAAAGGGTGGTAAGGTCATCTCTCGGATGTTGAACTCGGCGGT
GGCGGCTGGGAAGCGCGTGCGGTCCGAGACGGGCATCAGCAAGGGGGCCG
TCTCCATCTCTTCGGCGGCCGTTGAATTCTCGCAGCTCCGGTGCCCCAAG
GACCTGGGCAAGCCCTTCGAGGACAGCCGCGTGGCCATTGTGGGCGCGGG
CAAGATGTCGCGCCTCCTGATGATCCACATGGCCTCCCAGGGGGTCAAGG
CAGTGACGCTCATGAACCGAGGGCGCGAGAGAGCCGAGACCCTGGCGGCG
GAGTTCCCAGAGATGGAGGTGGCGGTGCGGCTCATGGACGACCTCTGGCC
GGTCATGCACACCCACGACGTCGTCTATACCTCCACGTCGGCGCAGGGCT
GCCTTCTGACCAAGGACAACATCCAGGCCTCGGGACTGGCCCCCGGGAAG
GTGATAGTTGACATATCGGTGCCGCGCAACGTGGAGACGGAGGTGAGCGA
GATTGAGGGCATGTTCGCCTACAACGTAGACCATCTGAAGGAGGTGGTGG
ACCGGAATACGGCCATGCGCAAGAAGCAGATGCTGGAGGCAGAGGACCTG
CTGGTGGAGGAGATGGAGAAATTTCGCTCGTGGCAGTTCTCCCTGGGGGC
TGTCCCGGCTCTGATGAAGCTGCAGGAGAAGGCGGAGACGATGCGCATGG
AAGAGCTGAAGAAGGCATCCAAGAAACTGAACAACCTTTCAGAAAAGGAG
CTTCAGACTGTGGAACGGCTCACGAAAGGGATCGTTAACAAGCTTCTGCA
CGGACCAATGTCGCACTTGCGGGCTACGGAGGATCTGGAGAAGAACCTCG
TGGCACTCAAGACGCTGAAAGCCGTCTTCGAGCTGTGA

Coding sequence (CDS) from alignment at CM002460.1:494181..496118-

>rna3018 ID=rna3018|Name=rna3018|organism=Nannochloropsis gaditana|type=CDS|length=1938bp|location=Sequence derived from alignment at CM002460.1:494181..496118- (Nannochloropsis gaditana)
ATGTCATGCCAGCGCGCAGAAAAATTCACTCTATACGCACACACATCTCT
CGCAGGCGTAAGGCTACCTCTCTACCTGCTGCAAAAGTCCGCTGTGCGGT
CGCTGTGGGATTTGTCAAGAGGACCAATTCGCTCGTTTGCTGCTTACCGA
GGTCGACCAATCAGCTGCACTTCTGTCACCATGTGCCCCCTGCGCGTGTT
TTTCGCATTGCTTCAGCTCCATATCCTATGTGTTTTCGGCTTGGGAGGGT
ACGCCTCTTCTGCCGGAGACGCTCGGGCAACCGGCCGCAACTGTCCTTTC
CGGGGCTGGGCAGTGGGTAAGACCTCTGCAAACACAGCCACGAGTTCATG
TGCTTTCGTGGCACCATCCCCGCCTTCTCGCAGCGCAGCCGCGCTCTCAT
CGACCACAAGCGAGGTTGCGGGGCCGTCATCGGAAGGGGGTTTCCGGACC
TCCATGGGGCTGTTTGTGGCACCCACTACCGGACACACGGCGCACTCGTT
GTCCCGGAGGCGCCGCGTCGGCCCCGCGCTGAAGCCGCTCTACGCCGCCA
CTGTGGCTGCCCCGACTGCCAGCATCCCTGCAGATGCGATCGCGGCTGCA
GCGGAGAAAAAGGAGAAGGAGGCGAACAAGAAGAAGCGCAAGGCGACTTC
CATGACCCCCTTGGAAGTGCACGTGATCGGCCTTTCTCACCACAACGCGG
CGGTGGAGGTGCGGGAGAAGCTGTCCATCCCGGAGGCCCAGTGGAACGAG
GCGGCCAACAAGCTCTGCGAGAGCGGGGTCATAGCAGAGGCCTGCACGTT
GTCGACATGCAACCGCTTTGAGATCTACTTCGCGGCCCACGACTCGTACG
CCGCCTTCCACGAGGCCACCGCCTTCCTGGAGCGGCACTCGGGCCTGCCG
CAGAGCGTGCTGCGGAAGAACTTGTTCCTCCTGTCGGGAGAGGACGCGAT
CTGGCACCTGATGCGGGTCTCGGGGGGCCTGGACTCCCTGGTGGTGGGGG
AGGGACAGATCCTCAGCCAGGTGAAGCAGTGTTACAACCACGGAATGGAG
GAGGACGGAAAGGGTGGTAAGGTCATCTCTCGGATGTTGAACTCGGCGGT
GGCGGCTGGGAAGCGCGTGCGGTCCGAGACGGGCATCAGCAAGGGGGCCG
TCTCCATCTCTTCGGCGGCCGTTGAATTCTCGCAGCTCCGGTGCCCCAAG
GACCTGGGCAAGCCCTTCGAGGACAGCCGCGTGGCCATTGTGGGCGCGGG
CAAGATGTCGCGCCTCCTGATGATCCACATGGCCTCCCAGGGGGTCAAGG
CAGTGACGCTCATGAACCGAGGGCGCGAGAGAGCCGAGACCCTGGCGGCG
GAGTTCCCAGAGATGGAGGTGGCGGTGCGGCTCATGGACGACCTCTGGCC
GGTCATGCACACCCACGACGTCGTCTATACCTCCACGTCGGCGCAGGGCT
GCCTTCTGACCAAGGACAACATCCAGGCCTCGGGACTGGCCCCCGGGAAG
GTGATAGTTGACATATCGGTGCCGCGCAACGTGGAGACGGAGGTGAGCGA
GATTGAGGGCATGTTCGCCTACAACGTAGACCATCTGAAGGAGGTGGTGG
ACCGGAATACGGCCATGCGCAAGAAGCAGATGCTGGAGGCAGAGGACCTG
CTGGTGGAGGAGATGGAGAAATTTCGCTCGTGGCAGTTCTCCCTGGGGGC
TGTCCCGGCTCTGATGAAGCTGCAGGAGAAGGCGGAGACGATGCGCATGG
AAGAGCTGAAGAAGGCATCCAAGAAACTGAACAACCTTTCAGAAAAGGAG
CTTCAGACTGTGGAACGGCTCACGAAAGGGATCGTTAACAAGCTTCTGCA
CGGACCAATGTCGCACTTGCGGGCTACGGAGGATCTGGAGAAGAACCTCG
TGGCACTCAAGACGCTGAAAGCCGTCTTCGAGCTGTGA

Synonyms

Publications