rna301, rna301 (mRNA) Nannochloropsis gaditana

Overview
Namerna301
Unique Namerna301
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length933
Alignment locationCM002455.1:747106..748143 +

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Properties
Property NameValue
ProductTetratricopeptide TPR2
Orig transcript idgnl|cribi|Naga_100026g14.10667.mrna
Orig protein idgnl|cribi|Naga_100026g14.10667
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:747106..748143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100026g14gene290Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna301rna301-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30413.1cds301Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna301 ID=rna301|Name=rna301|organism=Nannochloropsis gaditana|type=mRNA|length=933bp
ATGTCGGGCTTCCTCGGTGCGAACTGCCACGGCAAAGGCGGCGTGCGGCT
ACTCAAGCTTCATCGTCAAGGCGATCACCACGACTTTATCCAACTCACAG
CACAGATCCTTCTGACGGGCGGGGTGGACGAGGCATTCACAAAGGCAGAT
AACCGAAATATCGTCGCCACAGATACTGTCAAAAATACGGTTTACATTTT
GGCGCGTCGCCATCAATTTGCCTCCATCGAAGAATTTGGAATCATTATTG
CAAAACATTTTCTTGCCCAGTACCCAGCGATCGTCACCAAAGTCGATGTG
CAGCTGGTCAAAGATTTGTGGACCCGCGTTGTAAACAAGGACTCTCACGG
TCGCATTGCTCAGCACAATCATGCTTTCATAAAAGTAGGACCGCAAACCA
CGCACACGCACATCGTAGCCGAGAAAGTAGGCGGCTCTGTCGTCGTATCT
GTGCGTTCTGGCATTCGATCTCTGATTTTGCTCAAGACGACCCAGTCGGG
CTTCGAGAACTTCCACCGCGACGAGTTTCGCGCGTTGGGGGACACGAACG
ACCGGCTTGTGGGGACCTCGGTTGACGGGGAATGGTCCTTTAGCGCCGCC
ACGATTGCGTCTCGCCCAGACTACGAGGCTTTGAATAAGACAGTCCTCGA
CACTCTCATCGACGAGTTCGCCGGCCCCGCAGACAAGGGGGTGTACAGCG
TATCGGTGCAGCAGACTCTCTACGACATGGGCACTGGCCTCCTCGCCAAG
GTTCCCGGCGTGGACAAGATCGAGCTTTACATGCCAAACATCCACAACAT
CCCTGTGGACCTCTCAAAATTTCGTATCGAGAATAAGGATCACAGTGGGA
AGCCTGACATCTTTCTGCCTATGGACGACCCCCACGGTATGATCAAGGCG
ATCATCGAGCGGCCTCGAGGAGCGCGTCTGTAG
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protein sequence of rna301

>rna301-protein ID=rna301-protein|Name=rna301|organism=Nannochloropsis gaditana|type=polypeptide|length=264bp
MKGGTGPLILVALFSSLAYCINLSKCFIRISNRTRPFRETIRTTTSQHAR
AESVVAYHSSKMQLSLSWFSGRSEKSKEPRVLVSEGMELFRRGDVEGSIM
YFDEALLLGGAQLEPYLWQRGLSLYYAGRYREGAEQFRKDVAVNPADTEE
AIWAFLCEAQVDGFEEARRKMLIVQTDPRPYMRRAYELFKGTCSEEDLAK
EGANLSSPAAFYALLYLGLYAEARDEADKARNYIHASVATPYGNANRDYM
AGLARVHLIIRKWI
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mRNA from alignment at CM002455.1:747106..748143+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna301 ID=rna301|Name=rna301|organism=Nannochloropsis gaditana|type=mRNA|length=1038bp|location=Sequence derived from alignment at CM002455.1:747106..748143+ (Nannochloropsis gaditana)
ATGAAAGGGGGAACCGGGCCACTTATTTTGGTCGCACTCTTTAGTTCCCT
GGCGTATTGCATCAACTTGTCGAAGTGCTTCATCAGGATAAGCAACCGTA
CGCGTCCATTCAGGGAAACCATCCGAACGACAACCTCTCAACATGCCCGT
GCTGAAAGTGTGGTTGCCTATCATTCATCGAAAATGCAATTGTCATTGTC
GTGGTTCAGTGGAAGGAGCGAAAAAAGCAAAGAACCCCGGGTTCTTGTGA
GTGAAGGTAATGTTACGAAAAACTTGTGCAATGTGCCGAAGGTCTGCAGA
ATCCAATTTAAGCGCTTTTCGGTGGTTTAAATCGTTCCTACACTGACTTG
ATATATTGAAATGTAAAAACATGCAATGCCATTTCTCACCAACATTTGAT
CCGTGCCCAATTCAATATGAAAGGAATGGAACTGTTTCGTCGAGGGGATG
TAGAGGGCTCAATAATGTATTTTGACGAGGCGCTTCTTCTTGGCGGCGCG
CAACTTGAGCCTTACCTTTGGCAGCGGGGACTATCACTTTACTACGCTGG
ACGGTATAGGGAGGGCGCAGAACAATTTCGTGAGTATGGGTGAACTAAGG
ATTATCATAAGCATGCAAGTGACCCATCTACTCCATTTGGAAACCCCAAC
CGCAGGCAAAGACGTCGCTGTGAACCCTGCGGACACAGAAGAAGCCATCT
GGGCCTTTCTGTGTGAGGCACAGGTTGACGGCTTCGAAGAAGCACGAAGA
AAAATGTTGATCGTGCAGACAGACCCTCGTCCTTACATGCGTCGGGCTTA
CGAGCTTTTCAAAGGCACGTGTTCGGAGGAGGATCTTGCCAAAGAGGGAG
CCAACCTGTCATCTCCCGCCGCATTTTATGCCCTATTATACCTGGGGCTA
TATGCGGAGGCGCGTGATGAGGCCGACAAAGCCCGGAATTACATTCATGC
CAGCGTCGCCACGCCCTACGGGAACGCCAATCGCGACTACATGGCTGGCT
TAGCACGGGTGCACTTGATCATTCGAAAATGGATCTAA
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Coding sequence (CDS) from alignment at CM002455.1:747106..748143+

>rna301 ID=rna301|Name=rna301|organism=Nannochloropsis gaditana|type=CDS|length=2385bp|location=Sequence derived from alignment at CM002455.1:747106..748143+ (Nannochloropsis gaditana)
ATGAAAGGGGGAACCGGGCCACTTATTTTGGTCGCACTCTTTAGTTCCCT
GGCGTATTGCATCAACTTGTCGAAGTGCTTCATCAGGATAAGCAACCGTA
CGCGTCCATTCAGGGAAACCATCCGAACGACAACCTCTCAACATGCCCGT
GCTGAAAGTGTGGTTGCCTATCATTCATCGAAAATGCAATTGTCATTGTC
GTGGTTCAGTGGAAGGAGCGAAAAAAGCAAAGAACCCCGGGTTCTTGTGA
GTGAAGGAATGGAACTGTTTCGTCGAGGGGATGTAGAGGGCTCAATAATG
TATTTTGACGAGGCGCTTCTTCTTGGCGGCGCGCAACTTGAGCCTTACCT
TTGGCAGCGGGGACTATCACTTTACTACGCTGGACGGTATAGGGAGGGCG
CAGAACAATTTCGCAAAGACGTCGCTGTGAACCCTGCGGACACAGAAGAA
GCCATCTGGGCCTTTCTGTGTGAGGCACAGGTTGACGGCTTCGAAGAAGC
ACGAAGAAAAATGTTGATCGTGCAGACAGACCCTCGTCCTTACATGCGTC
GGGCTTACGAGCTTTTCAAAGGCACGTGTTCGGAGGAGGATCTTGCCAAA
GAGGGAGCCAACCTGTCATCTCCCGCCGCATTTTATGCCCTATTATACCT
GGGGCTATATGCGGAGGCGCGTGATGAGGCCGACAAAGCCCGGAATTACA
TTCATGCCAGCGTCGCCACGCCCTACGGGAACGCCAATCGCGACTACATG
GCTGGCTTAGCACGGGTGCACTTGATCATTCGAAAATGGATCTAAATGAA
AGGGGGAACCGGGCCACTTATTTTGGTCGCACTCTTTAGTTCCCTGGCGT
ATTGCATCAACTTGTCGAAGTGCTTCATCAGGATAAGCAACCGTACGCGT
CCATTCAGGGAAACCATCCGAACGACAACCTCTCAACATGCCCGTGCTGA
AAGTGTGGTTGCCTATCATTCATCGAAAATGCAATTGTCATTGTCGTGGT
TCAGTGGAAGGAGCGAAAAAAGCAAAGAACCCCGGGTTCTTGTGAGTGAA
GGAATGGAACTGTTTCGTCGAGGGGATGTAGAGGGCTCAATAATGTATTT
TGACGAGGCGCTTCTTCTTGGCGGCGCGCAACTTGAGCCTTACCTTTGGC
AGCGGGGACTATCACTTTACTACGCTGGACGGTATAGGGAGGGCGCAGAA
CAATTTCGCAAAGACGTCGCTGTGAACCCTGCGGACACAGAAGAAGCCAT
CTGGGCCTTTCTGTGTGAGGCACAGGTTGACGGCTTCGAAGAAGCACGAA
GAAAAATGTTGATCGTGCAGACAGACCCTCGTCCTTACATGCGTCGGGCT
TACGAGCTTTTCAAAGGCACGTGTTCGGAGGAGGATCTTGCCAAAGAGGG
AGCCAACCTGTCATCTCCCGCCGCATTTTATGCCCTATTATACCTGGGGC
TATATGCGGAGGCGCGTGATGAGGCCGACAAAGCCCGGAATTACATTCAT
GCCAGCGTCGCCACGCCCTACGGGAACGCCAATCGCGACTACATGGCTGG
CTTAGCACGGGTGCACTTGATCATTCGAAAATGGATCTAAATGAAAGGGG
GAACCGGGCCACTTATTTTGGTCGCACTCTTTAGTTCCCTGGCGTATTGC
ATCAACTTGTCGAAGTGCTTCATCAGGATAAGCAACCGTACGCGTCCATT
CAGGGAAACCATCCGAACGACAACCTCTCAACATGCCCGTGCTGAAAGTG
TGGTTGCCTATCATTCATCGAAAATGCAATTGTCATTGTCGTGGTTCAGT
GGAAGGAGCGAAAAAAGCAAAGAACCCCGGGTTCTTGTGAGTGAAGGAAT
GGAACTGTTTCGTCGAGGGGATGTAGAGGGCTCAATAATGTATTTTGACG
AGGCGCTTCTTCTTGGCGGCGCGCAACTTGAGCCTTACCTTTGGCAGCGG
GGACTATCACTTTACTACGCTGGACGGTATAGGGAGGGCGCAGAACAATT
TCGCAAAGACGTCGCTGTGAACCCTGCGGACACAGAAGAAGCCATCTGGG
CCTTTCTGTGTGAGGCACAGGTTGACGGCTTCGAAGAAGCACGAAGAAAA
ATGTTGATCGTGCAGACAGACCCTCGTCCTTACATGCGTCGGGCTTACGA
GCTTTTCAAAGGCACGTGTTCGGAGGAGGATCTTGCCAAAGAGGGAGCCA
ACCTGTCATCTCCCGCCGCATTTTATGCCCTATTATACCTGGGGCTATAT
GCGGAGGCGCGTGATGAGGCCGACAAAGCCCGGAATTACATTCATGCCAG
CGTCGCCACGCCCTACGGGAACGCCAATCGCGACTACATGGCTGGCTTAG
CACGGGTGCACTTGATCATTCGAAAATGGATCTAA
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Synonyms
Publications