EWM30413.1, cds301 (CDS) Nannochloropsis gaditana

Overview
NameEWM30413.1
Unique Namecds301
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:747106..747361 +
Alignment locationCM002455.1:747529..747684 +
Alignment locationCM002455.1:747761..748143 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30413.1
ProductTetratricopeptide TPR2
Orig transcript idgnl|cribi|Naga_100026g14.10667.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:747106..747361 +
CM002455.1supercontigCM002455.1:747529..747684 +
CM002455.1supercontigCM002455.1:747761..748143 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005575cellular_component
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013026TPR-contain_dom
IPR013105TPR_2
IPR011990TPR-like_helical_dom
Homology
BLAST of EWM30413.1 vs. NCBI_GenBank
Match: gi|585113073|gb|EWM30413.1| (Tetratricopeptide TPR2 [Nannochloropsis gaditana])

HSP 1 Score: 545.814 bits (1405), Expect = 0.000e+0
Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 0
Query:    1 MKGGTGPLILVALFSSLAYCINLSKCFIRISNRTRPFRETIRTTTSQHARAESVVAYHSSKMQLSLSWFSGRSEKSKEPRVLVSEGMELFRRGDVEGSIMYFDEALLLGGAQLEPYLWQRGLSLYYAGRYREGAEQFRKDVAVNPADTEEAIWAFLCEAQVDGFEEARRKMLIVQTDPRPYMRRAYELFKGTCSEEDLAKEGANLSSPAAFYALLYLGLYAEARDEADKARNYIHASVATPYGNANRDYMAGLARVHLIIRKWI 264
            MKGGTGPLILVALFSSLAYCINLSKCFIRISNRTRPFRETIRTTTSQHARAESVVAYHSSKMQLSLSWFSGRSEKSKEPRVLVSEGMELFRRGDVEGSIMYFDEALLLGGAQLEPYLWQRGLSLYYAGRYREGAEQFRKDVAVNPADTEEAIWAFLCEAQVDGFEEARRKMLIVQTDPRPYMRRAYELFKGTCSEEDLAKEGANLSSPAAFYALLYLGLYAEARDEADKARNYIHASVATPYGNANRDYMAGLARVHLIIRKWI
Sbjct:    1 MKGGTGPLILVALFSSLAYCINLSKCFIRISNRTRPFRETIRTTTSQHARAESVVAYHSSKMQLSLSWFSGRSEKSKEPRVLVSEGMELFRRGDVEGSIMYFDEALLLGGAQLEPYLWQRGLSLYYAGRYREGAEQFRKDVAVNPADTEEAIWAFLCEAQVDGFEEARRKMLIVQTDPRPYMRRAYELFKGTCSEEDLAKEGANLSSPAAFYALLYLGLYAEARDEADKARNYIHASVATPYGNANRDYMAGLARVHLIIRKWI 264          
BLAST of EWM30413.1 vs. NCBI_GenBank
Match: gi|923791695|ref|XP_013684496.1| (PREDICTED: uncharacterized protein LOC106388868 [Brassica napus] >gi|674865017|emb|CDY67876.1| BnaAnng25460D [Brassica napus])

HSP 1 Score: 197.208 bits (500), Expect = 4.846e-59
Identity = 103/219 (47.03%), Postives = 136/219 (62.10%), Query Frame = 0
Query:   45 TSQHARAESVVAYHSSKMQLSLSWFSGRSEKSKEPRVLVSEGMELFRRGDVEGSIMYFDEALLLGGAQLEPYLWQRGLSLYYAGRYREGAEQFRKDVAVNPADTEEAIWAFLCEAQVDGFEEARRKMLIVQTDPRPYMRRAYELFKGTCSEEDLAKEGANLSSPAAFYALLYLGLYAEARDEADKARNYIHASVATPYGNANRDYMAGLARVHLIIRKW 263
            T QHA A S   +  S   +  +   G     +E    +  GM+LFR+GDV GS+  FD+A++L   Q + YLWQRGLSLYY  R+ EGAEQFR DVA NP DTEE+IW FLCEA++ G + AR++ L V  D RP MR AY LFK     E L  + ++  +   FYA LY GLY EA  +++KA+ +I A+  +PYG  + DYMA LA+VH + R W
Sbjct:   38 TPQHAHALSRRLFLPSVSSIWDAITGGGDSNPREAIAAIRNGMQLFRQGDVSGSVTEFDKAIVLDSRQ-KAYLWQRGLSLYYMDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEARLHGVDVARKQFLEVGRDSRPVMREAYNLFKNGGDPEKLVNDFSSGQASEVFYASLYAGLYYEAEGKSEKAKFHITAACGSPYGQRSDDYMASLAKVHCLCRNW 255          
BLAST of EWM30413.1 vs. NCBI_GenBank
Match: gi|1191671439|gb|OTG23405.1| (putative tetratricopeptide repeat (TPR)-like superfamily protein [Helianthus annuus])

HSP 1 Score: 197.978 bits (502), Expect = 9.644e-59
Identity = 101/194 (52.06%), Postives = 128/194 (65.98%), Query Frame = 0
Query:   70 SGRSEKSKEPRVLVSEGMELFRRGDVEGSIMYFDEALLLGGAQLEPYLWQRGLSLYYAGRYREGAEQFRKDVAVNPADTEEAIWAFLCEAQVDGFEEARRKMLIVQTDPRPYMRRAYELFKGTCSEEDLAKEGANLSSPAAFYALLYLGLYAEARDEADKARNYIHASVATPYGNANRDYMAGLARVHLIIRKW 263
            +G ++ S++  + +  GM LFR+GDV GS+  FD A+ L   Q + YLWQRGLSLYY  R+ EGAEQFR DVA NP DTEE+IW FLCEAQ+ G  EAR+K L V  DPRP MR AY +F+     E L    +       FYA LY GLY E+++EADKA+ +I AS  +PYG  + DYMA LA+VH + R W
Sbjct:  104 TGGADSSRQALIAIRRGMVLFRQGDVAGSVAEFDNAMKLDPRQ-KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGAAEARKKFLEVGRDPRPVMRDAYNMFRDGGDPEKLVDAFSKGRESEYFYASLYAGLYYESQNEADKAKVHIVASCKSPYGQRSDDYMASLAKVHCLCRNW 296          
BLAST of EWM30413.1 vs. NCBI_GenBank
Match: gi|902193012|gb|KNA12179.1| (hypothetical protein SOVF_127800 [Spinacia oleracea])

HSP 1 Score: 196.438 bits (498), Expect = 1.333e-58
Identity = 98/193 (50.78%), Postives = 128/193 (66.32%), Query Frame = 0
Query:   71 GRSEKSKEPRVLVSEGMELFRRGDVEGSIMYFDEALLLGGAQLEPYLWQRGLSLYYAGRYREGAEQFRKDVAVNPADTEEAIWAFLCEAQVDGFEEARRKMLIVQTDPRPYMRRAYELFKGTCSEEDLAKEGANLSSPAAFYALLYLGLYAEARDEADKARNYIHASVATPYGNANRDYMAGLARVHLIIRKW 263
            G +   +E  + +  GM+LFR+GD+ GS+  FD+A+ L   Q + YLWQRGLSLYY  R+ EGAEQFR DVA NP DTEE+IW FLCEA + G +EAR++ L+V  DPRP MR+AYE+F+     + LA   ++      FYA LY GLY EA  E + A+NYI A+  +PY   + DYMA LA+VH I R W
Sbjct:   73 GSNYNPREAALAIRRGMQLFRQGDIIGSVAEFDKAVELDPRQ-KAYLWQRGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEALLYGVDEARKRFLVVGRDPRPVMRQAYEMFRDGGDPQKLADTFSSSRDGEYFYAFLYAGLYHEALGEEEAAKNYIVAACQSPYAQRSDDYMASLAKVHCICRNW 264          
BLAST of EWM30413.1 vs. NCBI_GenBank
Match: gi|976927230|gb|KVI11023.1| (Tetratricopeptide-like helical, partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 197.208 bits (500), Expect = 1.638e-58
Identity = 102/194 (52.58%), Postives = 127/194 (65.46%), Query Frame = 0
Query:   70 SGRSEKSKEPRVLVSEGMELFRRGDVEGSIMYFDEALLLGGAQLEPYLWQRGLSLYYAGRYREGAEQFRKDVAVNPADTEEAIWAFLCEAQVDGFEEARRKMLIVQTDPRPYMRRAYELFKGTCSEEDLAKEGANLSSPAAFYALLYLGLYAEARDEADKARNYIHASVATPYGNANRDYMAGLARVHLIIRKW 263
            +G    S+E  + +  GM LFR+GDV GS+  FD A+ L   Q + YLWQRGLSLYY  R+ EGAEQFR DVA NP DTEE+IW FLCEAQ+ G  EAR++ L V  DPRP MR AY +FK     E L    +   +   FYA LY GLY E+++EADKA+ ++ AS  +PYG  + DYMA LA+VH   RKW
Sbjct:  101 TGGGGSSREALIAIRRGMVLFRQGDVSGSVAEFDNAIKLDSRQ-KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGATEARKRFLEVGRDPRPVMREAYNMFKDGGDPEKLVAVFSEGRASEYFYASLYAGLYYESQNEADKAKVHLVASCQSPYGLRSDDYMASLAKVHCACRKW 293          
BLAST of EWM30413.1 vs. NCBI_GenBank
Match: gi|1028941003|ref|XP_016713707.1| (PREDICTED: uncharacterized protein LOC107927189 [Gossypium hirsutum])

HSP 1 Score: 195.282 bits (495), Expect = 3.179e-58
Identity = 110/243 (45.27%), Postives = 143/243 (58.85%), Query Frame = 0
Query:   27 FIRISNRTRPFRETIRTTTSQHARAESVVAYHSSKMQLSLSWFSG------RSEKSKEPRVLVSEGMELFRRGDVEGSIMYFDEALLLGGAQLEPYLWQRGLSLYYAGRYREGAEQFRKDVAVNPADTEEAIWAFLCEAQVDGFEEARRKMLIVQTDPRPYMRRAYELFKGTCSEEDLAKEGANLSSPAAFYALLYLGLYAEARDEADKARNYIHASVATPYGNANRDYMAGLARVHLIIRKW 263
            F  I  +T+PF  T R    Q+      ++   S+    L   SG       +   K+  + +  GM LFR GDV GS++ FD+A+ L   Q + YLWQRGLSLYY  R+ E AEQFR DVA NP DTEE+IW FLCEAQ+ G +EAR++ L V  DPRP MR AY LFK     E L     N   P  FYA LY GLY E++ +AD A+ +I ++  +PYG+ + DYMA LA+VH + R W
Sbjct:   28 FFSIKTQTKPFSFTTRIHNLQYPS----LSLTFSRRFFILPSVSGIWDALTGNNNPKDAVIAIRRGMLLFREGDVPGSVVEFDKAIELDPRQ-KAYLWQRGLSLYYLDRFEEAAEQFRIDVAENPNDTEESIWCFLCEAQLYGVDEARQRFLEVGRDPRPVMREAYNLFKDGGDPEKLVAAFTN--GPQYFYASLYAGLYYESQKKADAAKVHILSACNSPYGHRSDDYMASLAKVHCLCRNW 263          
BLAST of EWM30413.1 vs. NCBI_GenBank
Match: gi|1026767933|gb|OAE28161.1| (hypothetical protein AXG93_638s1510 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 195.667 bits (496), Expect = 5.478e-58
Identity = 99/195 (50.77%), Postives = 129/195 (66.15%), Query Frame = 0
Query:   69 FSGRSEKSKEPRVLVSEGMELFRRGDVEGSIMYFDEALLLGGAQLEPYLWQRGLSLYYAGRYREGAEQFRKDVAVNPADTEEAIWAFLCEAQVDGFEEARRKMLIVQTDPRPYMRRAYELFKGTCSEEDLAKEGANLSSPAAFYALLYLGLYAEARDEADKARNYIHASVATPYGNANRDYMAGLARVHLIIRKW 263
              GR   S++  ++   GM+LF +G V+ S+  FDEA+ L   Q  PYLWQRGLSLYY  R+ +GA QFR+DVAVNP DTEEAIW FLCEA++ G EEARRK L+V TD RP MR+ YE+F+     E++ +  ++      FYA LY GLY E  D  D AR  + A+V +PYG+ + DYMA LA+VH + R W
Sbjct:   95 MGGRERPSQQAILVTRRGMQLFEQGKVKESVEKFDEAMELDPRQ-RPYLWQRGLSLYYLDRFEDGAAQFREDVAVNPNDTEEAIWTFLCEAKLYGAEEARRKFLMVGTDSRPVMRKIYEVFRDGRPVEEILQSVSSTGGADFFYASLYTGLYHEVYDNTDAAREAMVAAVRSPYGSRSGDYMATLAKVHCLCRNW 288          
BLAST of EWM30413.1 vs. NCBI_GenBank
Match: gi|1035914410|gb|OAY44003.1| (hypothetical protein MANES_08G114800 [Manihot esculenta])

HSP 1 Score: 194.897 bits (494), Expect = 5.829e-58
Identity = 115/273 (42.12%), Postives = 154/273 (56.41%), Query Frame = 0
Query:    6 GPLILVALFSSLAYCINLSKCFIRISNRTRPFRETIRTTTSQHARAESVVAYHSSKMQLSLSWFSGR---------------SEKSKEPRVLVSEGMELFRRGDVEGSIMYFDEALLLGGAQLEPYLWQRGLSLYYAGRYREGAEQFRKDVAVNPADTEEAIWAFLCEAQVDGFEEARRKMLIVQTDPRPYMRRAYELFKGTCSEEDLAKEGANLSSPAAFYALLYLGLYAEARDEADKARNYIHASVATPYGNANRDYMAGLARVHLIIRKW 263
             P     L SS +YC + +      ++ T P+   +RT T  + R  S +      +Q  L +FS R                  ++E  V +  GM LFR+GDV GS+  FD+A+ L   Q + YLWQRGLSLYY  R+ EGAEQFR DVA NP DTEE+IW FLCEAQ+ G +EAR++ L V  DPRP MR AY +FK     E L    +N      FYA LY GLY E++++ D A+ +I A+  +PYG  + DYMA L++VH + R W
Sbjct:    6 NPKPTTILISSASYCSSPA------TSLTLPY--PLRTNT--NPRLFSTIPSSIHNLQHPLPFFSRRLFLPAVSGIWDALTGGNNAREAIVAIRRGMVLFRQGDVLGSLAEFDKAIELDPRQ-KAYLWQRGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARKRFLEVGRDPRPVMRDAYNMFKDRGDPEKLVTAFSNGPENEYFYASLYAGLYHESQNKPDAAKFHIVAACRSPYGQRSDDYMAALSKVHCLCRNW 267          
BLAST of EWM30413.1 vs. NCBI_GenBank
Match: gi|1150130975|ref|XP_020240219.1| (uncharacterized protein LOC109819039 isoform X2 [Cajanus cajan])

HSP 1 Score: 194.126 bits (492), Expect = 7.332e-58
Identity = 97/195 (49.74%), Postives = 129/195 (66.15%), Query Frame = 0
Query:   70 SGRSEKSKEPRVLVSEGMELFRRGDVEGSIMYFDEALLLGGAQLEPYLWQRGLSLYYAGRYREGAEQFRKDVAVNPADTEEAIWAFLCEAQVDGFEEARRKMLIVQTDPRPYMRRAYELFKGTCSEEDLAKEGANLSSPAAFYALLYLGLYAEARDEADKARNYIHASVATPYGNANRDYMAGLARVHLIIRKWI 264
            +G +  ++E  + +  GM LFR+GDV GS+  FD+A+ L   Q + YLWQRGLSLYY  R+ EGAEQFR DVA NP DTEE+IW FLCEAQ+ G +EAR++ L V TDPRP MR AY +FK     E L    +       FYA LY GLY E++++AD A+ +I A+  + YG  + DYMA L++VH + R W+
Sbjct:   62 TGGNNNAREAVLAIRRGMSLFRQGDVSGSVEEFDKAIQLDPRQ-KAYLWQRGLSLYYLNRFDEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARKRYLEVGTDPRPVMREAYNMFKDGGDPEKLVAAFSGSREGEYFYASLYAGLYYESQNQADAAKVHIVAACQSSYGQRSDDYMASLSKVHCLCRNWV 255          
BLAST of EWM30413.1 vs. NCBI_GenBank
Match: gi|1044553082|ref|XP_017412539.1| (PREDICTED: uncharacterized protein LOC108324191 isoform X2 [Vigna angularis] >gi|965608598|dbj|BAT95089.1| hypothetical protein VIGAN_08175300 [Vigna angularis var. angularis])

HSP 1 Score: 194.126 bits (492), Expect = 9.007e-58
Identity = 111/257 (43.19%), Postives = 148/257 (57.59%), Query Frame = 0
Query:   27 FIRISNRTRPFRETIRTTTSQHARAESVVAYHSSKMQLSLS-----------------W--FSGRSEKSKEPRVLVSEGMELFRRGDVEGSIMYFDEALLLGGAQLEPYLWQRGLSLYYAGRYREGAEQFRKDVAVNPADTEEAIWAFLCEAQVDGFEEARRKMLIVQTDPRPYMRRAYELFKGTCSEEDLAKEGANLSSPAAFYALLYLGLYAEARDEADKARNYIHASVATPYGNANRDYMAGLARVHLIIRKWI 264
            F+ IS+  +P   +I  + S H  + S     SSK   SL+                 W   +G S  ++E  + +  GM LFR+GDV GS++ FD+A+ L   Q + YLWQRGLSLYY  R+ EGAEQFR DVA NP DTEE+IW FLCEAQ+ G +EAR++ L V  DPRP MR AY +FK     E L    +       FYA LY GLY E+++E D A+ +I A+  + YG  + DYMA L++VH   R W+
Sbjct:    4 FMSISHNLKP---SILVSPSLH-HSSSFPILLSSKQPFSLTHPLNLTRRLFLPSVSGIWDALTGASNNAREAVLAIRRGMSLFRQGDVSGSLVEFDKAIQLDPRQ-KAYLWQRGLSLYYLNRFEEGAEQFRFDVAQNPNDTEESIWCFLCEAQLYGVDEARKRFLEVGIDPRPVMREAYNMFKDGGDPEKLVAAFSGGRDSEYFYASLYAGLYYESQNEIDAAKVHIVAACQSSYGQRSDDYMAALSKVHCQCRNWV 255          
The following BLAST results are available for this feature:
BLAST of EWM30413.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113073|gb|EWM30413.1|0.000e+0100.00Tetratricopeptide TPR2 [Nannochloropsis gaditana][more]
gi|923791695|ref|XP_013684496.1|4.846e-5947.03PREDICTED: uncharacterized protein LOC106388868 [B... [more]
gi|1191671439|gb|OTG23405.1|9.644e-5952.06putative tetratricopeptide repeat (TPR)-like super... [more]
gi|902193012|gb|KNA12179.1|1.333e-5850.78hypothetical protein SOVF_127800 [Spinacia olerace... [more]
gi|976927230|gb|KVI11023.1|1.638e-5852.58Tetratricopeptide-like helical, partial [Cynara ca... [more]
gi|1028941003|ref|XP_016713707.1|3.179e-5845.27PREDICTED: uncharacterized protein LOC107927189 [G... [more]
gi|1026767933|gb|OAE28161.1|5.478e-5850.77hypothetical protein AXG93_638s1510 [Marchantia po... [more]
gi|1035914410|gb|OAY44003.1|5.829e-5842.12hypothetical protein MANES_08G114800 [Manihot escu... [more]
gi|1150130975|ref|XP_020240219.1|7.332e-5849.74uncharacterized protein LOC109819039 isoform X2 [C... [more]
gi|1044553082|ref|XP_017412539.1|9.007e-5843.19PREDICTED: uncharacterized protein LOC108324191 is... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna301rna301Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications