rna3009, rna3009 (mRNA) Nannochloropsis gaditana

Overview
Namerna3009
Unique Namerna3009
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2246
Alignment locationCM002460.1:466107..467453 +

Link to JBrowse

Properties
Property NameValue
ProductRibosomal protein L18e/L15P
Orig transcript idgnl|cribi|Naga_100125g16.430.mrna
Orig protein idgnl|cribi|Naga_100125g16.430
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:466107..467453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100125g16gene2888Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3009rna3009-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27667.1cds3001Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3009 ID=rna3009|Name=rna3009|organism=Nannochloropsis gaditana|type=mRNA|length=2246bp
CAGGCATGTTGCTCGATAAGGAAGCGGGCACATTCAGTGCATTCGATTTC
GGTCTTGATCGGCGGCTTATCAAGGCGGTGTCGCGCATGGGTTTTATTTA
CCCAACCCTGGTACAAAGTAAGGCAATCCCGTTGGCCATGGAGGGGAAGG
ATTTACTCGTGCGTGCCCGCACCGGGTCCGGGAAAACCGCCGCCTTCGCC
CTGCCTACTCTCCACAAAATTCTGCTCCAGAAGGCAGAAGAGAGCACACT
CGGCATGTCCCATTCTGTTTCGACGACACCTGCCACACGGTCGAGTCGCA
AGAAGCCAAAGGCGGGGGCGCAATCATCACCCAGCGGGGTATTGGCCTTA
ATTCTTGTCCCCACAAAAGAATTGTGCGACCAAACCTACCGTACCTTCGT
AGATCTAACCTACTACTGTCGAGACGTGGTGAGTGTGCAGGCCTTGCTCG
GAGGGGGGGACGCGGCGGCCATGAGCGCGCAACAAGCCCTTCTGAGGGAC
CAGCCCGACCTGCTCGTGGCCACGCCCTCTCGCCTCGTCTCCCACTTGCA
GGCTGGGAACATATCCTTGAAGGCCTCGGTACAAACCCTGGTCATGGACG
AGGCCGACCTGATCCTCTCCTTCGGTTACGAGGAGGACGTGAAGCGAGTC
GTGGCGGCGCTGCCCCGCATCTACCAGGGCATCCTCATGTCCGCCACCCT
CAGCCCCGAACTCGACGACTTAAAGCGTGTAGTCCTGCACAGCCCGGCCG
TACTCAAGCTGGAGGAGGGTCGAACGGATGGCGAGCTTCTCCAGTTCTAC
GTGAGCCTCCCCGAGGCCGACAAGCTCCTGCTCGTCTTCGTCTTCCTGAA
GCTGGGGGTGCTGGAGGGAAAGGGGCTCTTTTTCGTGAACGGCCTGGACG
CCTGCTACCGGCTCAAGCTCTTTTTGGAGCAGTTCTCCATTCGATCCGCG
GTCTTGAATGCCGAGCTGCCGCTGAACTCCCGGCTGCACACGCTGCAGGA
GTTCAACCGAGGCATCTTCGACTTCCTGATAGCCACGGACGAGAGCCTGG
ACACGGCGTGCGGGCCAGAGAGCGAGGAGGAAGAAGAAGAGGAGGAGGAG
GGGGAGGAGAAGGAGGAGGAGGAGGAGGAGGGGGAGGAAGAGGGAGTTGA
AAAGGAGGAGGGGGGGAAAGGCAGCATGCGAAAAGGGAAGGGGGGAGCTG
AGGTGTCGGCGGGGAGGAGGGGAAGGCGCCAGTCGAGGGGTGGAGGACCG
GCCGCGGGGAAAGAGGAGGGCCGGCCGGGGGAGAAGGAAGAAGAGGAGGA
TGAGAAAGAGTACGGCGTGCACCGGGGTATCGACTTCCGGGCCGTCAATT
TCGTCGTGAACGTGGACTTCCCGCGGTCCGCCCGCGCCTACACGCATCGG
ATCGGCCGCACCGCCCGTGGAGGGGCCAACGGGACAGCCCTCTCCCTCCT
GAACAAGGACGACGCGAGGGAGCAGGAGGTGCTGGCGGCGGTGCAGGCCT
CTCAGCCCGCCCTGCCGCCCTCGGAGGGGGACACCCTGGCCGACAGCCTC
GGTCCCGGGGGCGAGGTGGGGGCGACAGGCGCGCTGCGCACCCAGCCTAC
GCCCCTGGCCTTTGATCTGAAGGAGCTGGAGGGATTTCGGTACCGGGTGG
AGGATGTGCGGCGGGCGGTGACGCGGATGGCGGTCAAGGAGGCTCGCTTA
GCGGAGATCAAGCAGGAGCTCTTGAACTCCCAGGCCCTGAAGACGCACTT
TCAGGAGAACCCGCACGAGTTCCAGATCCTGCGGCACGACAAGGGCATTC
TGCCCTCGCACCGGGTGCAAGAGCACTTGAAGCACGTGCCTGACTACCTC
CTGCCCGACGGGATGCGGGTGGGCGCAGATCCCGCGACCAAGAAGCGGAA
GCGGCGTCGGAGGGCGGGCAGAAAGAGGGCGGTGGGGCAGGGGGCGGACC
AACAGCGGAGGAAGAGCAACGACCCGTTGCAGCATTTTGCGACGGAGGAG
GACGAGGAGGAGGGCAGCGGAGGGGAGGACGGTGGGGAGGGCGACGACCG
AGAGGAGGTTTTCGACAAGGAGGAGGAGGAAGAGAACGGAGGGGTACCGA
TGGAACAGCGTATTTATAGCAAGGGCGACGATCTGGGCGAAAGCTCGGCT
GGGCGTGTGCGGTGGAAGAAGCTCCACAAGAAGGGGAAGTTCTCGGACAA
GAAACGGATGACTCCCAAGGAGTACAAACTCTACCACCGGCACTAG
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protein sequence of rna3009

>rna3009-protein ID=rna3009-protein|Name=rna3009|organism=Nannochloropsis gaditana|type=polypeptide|length=148bp
MPSRLSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILMDKYHP
GYFGKVGMRHFHVLKNRTYTKAVNVDKLWSLLGAEAYEAAKAGGGDKAPV
LDVTQMGFFKVLGKGKLPSVPLVVKAKYFSKDAEKKIREAGGATLLTA
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mRNA from alignment at CM002460.1:466107..467453+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3009 ID=rna3009|Name=rna3009|organism=Nannochloropsis gaditana|type=mRNA|length=1347bp|location=Sequence derived from alignment at CM002460.1:466107..467453+ (Nannochloropsis gaditana)
AAGACACCGTACCAgtgcctcccctctttctgcaCTCACACTCCCCGGAC
AatcgtgccccccctcccgaagcACCGGGACGAAGGTTATGTGGGACGGG
TGGGTTGGATTCagtggaaggaagcgaaatTAGTAAGATGGATGGCGGGG
CAAGATGCAGGGCAATGTAGATGAACGACCTTCGCTGAGGCCTCCCTCgt
aagtggaggagaggcaggccTCAGGAATGGCTGGCCTGCTGCCAGGCTGT
CTTGCCAAGGCGTCCACTCTATGGAAGCTTTGGCTGTGTACACTGGTGCT
GACATGCTTGTGTCTTTGCCAATGGGCGCCGCCTTTTTGCTGTGCTTTTA
CCCGCAGCACTGGAAAAAGACGGGAAGACAAAGGCTGACCGACACTCCGT
TTCCCTACCACACATGACAATCATGCAGGAGAGTTTACTTCTTCTTTGTT
TTGAAAATGGTAAGTGCAGTAGACTGGGGGAAAGGACTGAACAGACACGC
CATTGCGAAGGTTTGCTTTTCGCAGTAATTGCCTGGATCTCACgtctctt
gcctcctcccctccccaatTTAGCCTTCGAGGCTCTCCAAGAACCGAAAA
AAGCGAGGACATGTCAGCGCAGGCCACGGCCGCATTGGCAAGCATCGCAA
GCATCCGGGTACGTGTCATAATGCATGCATGGAGGGTCATTTATTTttcg
ggaaggggagggaggggcgtgcaTGTGAGCGCTGCTGCACTCAATGATTG
TCCCTCACCACCTCACGACTTCCTTATTGTCTGCAATTCCAGGTGGGCGG
GGTAACGCCGGTGGTCAACACCACCATCGCATCCTGATGGATAAATATCA
CCCTGGGTACTTCGGTAAGGTGGGGATGCGGCACTTCCACGTCCTGAAGA
ACCGGACCTACACCAAGGCCGTCAACGTGGACAAGCTCTGGTCGCTGTTG
GGGGCCGAGGCGTAcgaggcggcgaaggcgggcggaggggacaaggcccC
GGTGCTGGATGTGACACAGATGGGGTTCTTCAAGGTGcttggaaaaggga
agctGCCCTCCGTGCCCCTGGTCGTGAAGGCCAAGTACTTCTCGAAGGAC
GCGGAGAAAAAGAtcagggaggccgggggagcCACGCTCCTAACCGCGTA
AATAGAGGGAGGACGCCAGAGATAGGTGCTTTGGAGTGAGGAAGTCATGC
CTCGGGGTCGAGGGCTGGTGGGAAGGGTGACGTGTGGGTAGAAGGAACTC
AGCTTACACGACAGCACCGAGTAAAGAAGCAAAGGATCGCActgggcaag
gaaggggaaacaaTTGCCAGTCTTTTGAATCGCAGTCATGGTTTTGC
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Coding sequence (CDS) from alignment at CM002460.1:466107..467453+

>rna3009 ID=rna3009|Name=rna3009|organism=Nannochloropsis gaditana|type=CDS|length=1341bp|location=Sequence derived from alignment at CM002460.1:466107..467453+ (Nannochloropsis gaditana)
ATGCCTTCGAGGCTCTCCAAGAACCGAAAAAAGCGAGGACATGTCAGCGC
AGGCCACGGCCGCATTGGCAAGCATCGCAAGCATCCGGGTGGGCGGGGTA
ACGCCGGTGGTCAACACCACCATCGCATCCTGATGGATAAATATCACCCT
GGGTACTTCGGTAAGGTGGGGATGCGGCACTTCCACGTCCTGAAGAACCG
GACCTACACCAAGGCCGTCAACGTGGACAAGCTCTGGTCGCTGTTGGGGG
CCGAGGCGTAcgaggcggcgaaggcgggcggaggggacaaggcccCGGTG
CTGGATGTGACACAGATGGGGTTCTTCAAGGTGcttggaaaagggaagct
GCCCTCCGTGCCCCTGGTCGTGAAGGCCAAGTACTTCTCGAAGGACGCGG
AGAAAAAGAtcagggaggccgggggagcCACGCTCCTAACCGCGTAAATG
CCTTCGAGGCTCTCCAAGAACCGAAAAAAGCGAGGACATGTCAGCGCAGG
CCACGGCCGCATTGGCAAGCATCGCAAGCATCCGGGTGGGCGGGGTAACG
CCGGTGGTCAACACCACCATCGCATCCTGATGGATAAATATCACCCTGGG
TACTTCGGTAAGGTGGGGATGCGGCACTTCCACGTCCTGAAGAACCGGAC
CTACACCAAGGCCGTCAACGTGGACAAGCTCTGGTCGCTGTTGGGGGCCG
AGGCGTAcgaggcggcgaaggcgggcggaggggacaaggcccCGGTGCTG
GATGTGACACAGATGGGGTTCTTCAAGGTGcttggaaaagggaagctGCC
CTCCGTGCCCCTGGTCGTGAAGGCCAAGTACTTCTCGAAGGACGCGGAGA
AAAAGAtcagggaggccgggggagcCACGCTCCTAACCGCGTAAATGCCT
TCGAGGCTCTCCAAGAACCGAAAAAAGCGAGGACATGTCAGCGCAGGCCA
CGGCCGCATTGGCAAGCATCGCAAGCATCCGGGTGGGCGGGGTAACGCCG
GTGGTCAACACCACCATCGCATCCTGATGGATAAATATCACCCTGGGTAC
TTCGGTAAGGTGGGGATGCGGCACTTCCACGTCCTGAAGAACCGGACCTA
CACCAAGGCCGTCAACGTGGACAAGCTCTGGTCGCTGTTGGGGGCCGAGG
CGTAcgaggcggcgaaggcgggcggaggggacaaggcccCGGTGCTGGAT
GTGACACAGATGGGGTTCTTCAAGGTGcttggaaaagggaagctGCCCTC
CGTGCCCCTGGTCGTGAAGGCCAAGTACTTCTCGAAGGACGCGGAGAAAA
AGAtcagggaggccgggggagcCACGCTCCTAACCGCGTAA
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Synonyms
Publications