EWM27667.1, cds3001 (CDS) Nannochloropsis gaditana

Overview
NameEWM27667.1
Unique Namecds3001
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:466563..466565 +
Alignment locationCM002460.1:466680..466764 +
Alignment locationCM002460.1:466899..467257 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27667.1
ProductRibosomal protein L18e/L15P
Orig transcript idgnl|cribi|Naga_100125g16.430.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:466563..466565 +
CM002460.1supercontigCM002460.1:466680..466764 +
CM002460.1supercontigCM002460.1:466899..467257 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0015934large ribosomal subunit
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR030878Ribosomal_L15
IPR001196Ribosomal_L15_CS
IPR021131Ribosomal_L18e/L15P
Homology
[Close]
BLAST of EWM27667.1 vs. NCBI_GenBank
Match: gi|585109938|gb|EWM27667.1| (Ribosomal protein L18e/L15P [Nannochloropsis gaditana])

HSP 1 Score: 297.36 bits (760), Expect = 4.761e-102
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0 
Query:    1 MPSRLSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILMDKYHPGYFGKVGMRHFHVLKNRTYTKAVNVDKLWSLLGAEAYEAAKAGGGDKAPVLDVTQMGFFKVLGKGKLPSVPLVVKAKYFSKDAEKKIREAGGATLLTA 148
            MPSRLSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILMDKYHPGYFGKVGMRHFHVLKNRTYTKAVNVDKLWSLLGAEAYEAAKAGGGDKAPVLDVTQMGFFKVLGKGKLPSVPLVVKAKYFSKDAEKKIREAGGATLLTA
Sbjct:    1 MPSRLSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILMDKYHPGYFGKVGMRHFHVLKNRTYTKAVNVDKLWSLLGAEAYEAAKAGGGDKAPVLDVTQMGFFKVLGKGKLPSVPLVVKAKYFSKDAEKKIREAGGATLLTA 148
[Close]
BLAST of EWM27667.1 vs. NCBI_GenBank
Match: gi|553180480|ref|XP_005853411.1| (large subunit ribosomal protein L27Ae, partial [Nannochloropsis gaditana CCMP526] >gi|422295651|gb|EKU22950.1| large subunit ribosomal protein L27Ae, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 295.434 bits (755), Expect = 3.210e-101
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0 
Query:    2 PSRLSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILMDKYHPGYFGKVGMRHFHVLKNRTYTKAVNVDKLWSLLGAEAYEAAKAGGGDKAPVLDVTQMGFFKVLGKGKLPSVPLVVKAKYFSKDAEKKIREAGGATLLTA 148
            PSRLSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILMDKYHPGYFGKVGMRHFHVLKNRTYTKAVNVDKLWSLLGAEAYEAAKAGGGDKAPVLDVTQMGFFKVLGKGKLPSVPLVVKAKYFSKDAEKKIREAGGATLLTA
Sbjct:    1 PSRLSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILMDKYHPGYFGKVGMRHFHVLKNRTYTKAVNVDKLWSLLGAEAYEAAKAGGGDKAPVLDVTQMGFFKVLGKGKLPSVPLVVKAKYFSKDAEKKIREAGGATLLTA 147
[Close]
BLAST of EWM27667.1 vs. NCBI_GenBank
Match: gi|301111414|ref|XP_002904786.1| (ribosomal protein L27 [Phytophthora infestans T30-4] >gi|695394001|ref|XP_009520762.1| hypothetical protein PHYSODRAFT_354074 [Phytophthora sojae] >gi|66270187|gb|AAY43423.1| ribosomal protein L27 [Phytophthora infestans] >gi|262095116|gb|EEY53168.1| ribosomal protein L27 [Phytophthora infestans T30-4] >gi|348685659|gb|EGZ25474.1| hypothetical protein PHYSODRAFT_354074 [Phytophthora sojae])

HSP 1 Score: 236.498 bits (602), Expect = 7.712e-78
Identity = 111/148 (75.00%), Postives = 129/148 (87.16%), Query Frame = 0 
Query:    1 MPSRLSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILMDKYHPGYFGKVGMRHFHVLKNRTYTKAVNVDKLWSLLGAEAYEAAKAGGGDKAPVLDVTQMGFFKVLGKGKLPSVPLVVKAKYFSKDAEKKIREAGGATLLTA 148
            MPSR SKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILMDK+HPGYFGKVGMRHFH+L+NRT+   VNV++LW+L+  +  E A+     KAPV+DVT+ G+FKVLGKG+LP VP++VKAKYFS +AEKKI+ AGGA LLTA
Sbjct:    1 MPSRFSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILMDKFHPGYFGKVGMRHFHLLRNRTHCPTVNVERLWTLVSEKTKEQAEKAKDGKAPVIDVTKAGYFKVLGKGRLPEVPVIVKAKYFSAEAEKKIKAAGGACLLTA 148
[Close]
BLAST of EWM27667.1 vs. NCBI_GenBank
Match: gi|298710836|emb|CBJ26345.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 234.187 bits (596), Expect = 6.124e-77
Identity = 115/148 (77.70%), Postives = 129/148 (87.16%), Query Frame = 0 
Query:    1 MPSRLSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILMDKYHPGYFGKVGMRHFHVLKNRTYTKAVNVDKLWSLLGAEAYEAAKAGGGDKAPVLDVTQMGFFKVLGKGKLPSVPLVVKAKYFSKDAEKKIREAGGATLLTA 148
            MPSR SKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRIL DK+HPGYFGKVGMRHFHVL+NR +   VN+DKLWS+L     E AKAGGG KAPV+DVT  G+FKVLGKGKLP+VP++V+AK FSK AE+KI+ AGGA LL+A
Sbjct:    1 MPSRFSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILFDKFHPGYFGKVGMRHFHVLRNREHCPIVNLDKLWSMLPEGTMEQAKAGGG-KAPVIDVTDNGYFKVLGKGKLPAVPIIVRAKIFSKLAEQKIKAAGGACLLSA 147
[Close]
BLAST of EWM27667.1 vs. NCBI_GenBank
Match: gi|325186878|emb|CCA21423.1| (ribosomal protein L27 putative [Albugo laibachii Nc14])

HSP 1 Score: 234.187 bits (596), Expect = 6.615e-77
Identity = 105/148 (70.95%), Postives = 130/148 (87.84%), Query Frame = 0 
Query:    1 MPSRLSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILMDKYHPGYFGKVGMRHFHVLKNRTYTKAVNVDKLWSLLGAEAYEAAKAGGGDKAPVLDVTQMGFFKVLGKGKLPSVPLVVKAKYFSKDAEKKIREAGGATLLTA 148
            MP+R SKNRKKRGHVSAGHGR+GKHRKHPGGRGNAGGQHHHRILMDK+HPGYFGKVGMRHFH+L+NR +   VNV++LW+L+  ++ E A+    +KAP++DVT+ GFFKVLGKG+LP +P++VKAK+FS++AEKKI+  GGA LLTA
Sbjct:    1 MPTRCSKNRKKRGHVSAGHGRVGKHRKHPGGRGNAGGQHHHRILMDKFHPGYFGKVGMRHFHLLRNRQHCPTVNVERLWTLVSEKSKEQAEKSTDNKAPIIDVTKAGFFKVLGKGRLPKIPVIVKAKFFSQEAEKKIKAVGGACLLTA 148
[Close]
BLAST of EWM27667.1 vs. NCBI_GenBank
Match: gi|675211983|ref|XP_008914876.1| (60S ribosomal protein L27a [Phytophthora parasitica INRA-310] >gi|566008981|gb|ETI31892.1| 60S ribosomal protein L27a [Phytophthora parasitica P1569] >gi|567946442|gb|ETK72252.1| 60S ribosomal protein L27a [Phytophthora parasitica] >gi|567975135|gb|ETL25704.1| 60S ribosomal protein L27a [Phytophthora parasitica] >gi|568004594|gb|ETL78913.1| 60S ribosomal protein L27a [Phytophthora parasitica] >gi|568034517|gb|ETM32186.1| 60S ribosomal protein L27a [Phytophthora parasitica] >gi|568084862|gb|ETM99782.1| 60S ribosomal protein L27a [Phytophthora parasitica INRA-310] >gi|570312662|gb|ETO60610.1| 60S ribosomal protein L27a [Phytophthora parasitica P1976] >gi|570936460|gb|ETP01717.1| 60S ribosomal protein L27a [Phytophthora parasitica CJ01A1] >gi|570966758|gb|ETP29877.1| 60S ribosomal protein L27a [Phytophthora parasitica P10297] >gi|970646206|gb|KUF86451.1| 60S ribosomal protein L27a [Phytophthora nicotianae])

HSP 1 Score: 232.646 bits (592), Expect = 1.937e-76
Identity = 109/148 (73.65%), Postives = 127/148 (85.81%), Query Frame = 0 
Query:    1 MPSRLSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILMDKYHPGYFGKVGMRHFHVLKNRTYTKAVNVDKLWSLLGAEAYEAAKAGGGDKAPVLDVTQMGFFKVLGKGKLPSVPLVVKAKYFSKDAEKKIREAGGATLLTA 148
            MPSR SKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILMDK+HPGYFGKVGMRHFH+L+NR +   VNV++LW+L+  +  E A+     KAPV+DVT+ G+FKVLGKG+LP VP++VKAKYFS +AEKKI+  GGA LLTA
Sbjct:    1 MPSRFSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILMDKFHPGYFGKVGMRHFHLLRNRQHCPTVNVERLWTLVSEKTKEQAEKAKDGKAPVIDVTKAGYFKVLGKGRLPEVPVIVKAKYFSAEAEKKIKAVGGACLLTA 148
[Close]
BLAST of EWM27667.1 vs. NCBI_GenBank
Match: gi|953501152|emb|CEG37522.1| (60s ribosomal protein l27a [Plasmopara halstedii])

HSP 1 Score: 241.891 bits (616), Expect = 3.068e-76
Identity = 111/148 (75.00%), Postives = 129/148 (87.16%), Query Frame = 0 
Query:    1 MPSRLSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILMDKYHPGYFGKVGMRHFHVLKNRTYTKAVNVDKLWSLLGAEAYEAAKAGGGDKAPVLDVTQMGFFKVLGKGKLPSVPLVVKAKYFSKDAEKKIREAGGATLLTA 148
            MPSR SKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILMDK+HPGYFGKVGMRHFH+L+NR++   VNV++LW+L+  +  E A+     KAPV+DVT+ GFFKVLGKG+LP VPL+VKAK+FS +AEKKI+ AGGA LLTA
Sbjct:    1 MPSRFSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILMDKFHPGYFGKVGMRHFHLLRNRSHCPTVNVERLWTLVSEKTKEQAEKAKDGKAPVIDVTKAGFFKVLGKGRLPEVPLIVKAKFFSAEAEKKIKAAGGACLLTA 148
[Close]
BLAST of EWM27667.1 vs. NCBI_GenBank
Match: gi|1214702547|gb|OWZ14719.1| (60S ribosomal protein L27a, partial [Phytophthora megakarya])

HSP 1 Score: 231.106 bits (588), Expect = 7.881e-76
Identity = 109/147 (74.15%), Postives = 127/147 (86.39%), Query Frame = 0 
Query:    2 PSRLSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILMDKYHPGYFGKVGMRHFHVLKNRTYTKAVNVDKLWSLLGAEAYEAAKAGGGDKAPVLDVTQMGFFKVLGKGKLPSVPLVVKAKYFSKDAEKKIREAGGATLLTA 148
            PSR SKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILMDK+HPGYFGKVGMRHFH+L+NR +   VNV++LW+L+  +  E A+     KAPV+DVT+ G+FKVLGKG+LP VP++VKAKYFS +AEKKI+ AGGA LLTA
Sbjct:    1 PSRFSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILMDKFHPGYFGKVGMRHFHLLRNRQHCPTVNVERLWTLVSDKTKEQAEKAKDGKAPVIDVTKAGYFKVLGKGRLPEVPVIVKAKYFSAEAEKKIKAAGGACLLTA 147
[Close]
BLAST of EWM27667.1 vs. NCBI_GenBank
Match: gi|698809084|ref|XP_009837571.1| (60S ribosomal protein L27a [Aphanomyces astaci] >gi|574107272|gb|ETV72785.1| 60S ribosomal protein L27a [Aphanomyces astaci])

HSP 1 Score: 226.868 bits (577), Expect = 4.265e-74
Identity = 106/148 (71.62%), Postives = 126/148 (85.14%), Query Frame = 0 
Query:    1 MPSRLSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILMDKYHPGYFGKVGMRHFHVLKNRTYTKAVNVDKLWSLLGAEAYEAAKAGGGDKAPVLDVTQMGFFKVLGKGKLPSVPLVVKAKYFSKDAEKKIREAGGATLLTA 148
            MP+   KNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRIL DK+HPGYFGKVGMR FH+L+NR +   VNV+KLWSL+ A+  E A+A    KAP++DVT+ G+FKVLGKG+LP+VP++VKAKYFS++AE KI+  GGA LLTA
Sbjct:    1 MPTATHKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILFDKFHPGYFGKVGMRQFHLLRNRYHCPTVNVEKLWSLVSAQVKETAEASKDGKAPIIDVTKAGYFKVLGKGRLPAVPVIVKAKYFSQEAENKIKAVGGACLLTA 148
[Close]
BLAST of EWM27667.1 vs. NCBI_GenBank
Match: gi|669142102|ref|XP_008606613.1| (60S ribosomal protein L27a [Saprolegnia diclina VS20] >gi|813174579|ref|XP_012204946.1| 60S ribosomal protein L27a [Saprolegnia parasitica CBS 223.65] >gi|530741897|gb|EQC40139.1| 60S ribosomal protein L27a [Saprolegnia diclina VS20] >gi|641530214|gb|KDO24351.1| 60S ribosomal protein L27a [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 225.328 bits (573), Expect = 1.774e-73
Identity = 105/148 (70.95%), Postives = 126/148 (85.14%), Query Frame = 0 
Query:    1 MPSRLSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILMDKYHPGYFGKVGMRHFHVLKNRTYTKAVNVDKLWSLLGAEAYEAAKAGGGDKAPVLDVTQMGFFKVLGKGKLPSVPLVVKAKYFSKDAEKKIREAGGATLLTA 148
            MP+   KNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRIL DK+HPGYFGKVGMR FH+LKNR +   VNV+K+WSL+ AE  EAA+     KAP++DVT+ G+FKVLGKG+LP++P++VKAK+FS++AE KI+  GGA LLTA
Sbjct:    1 MPTAAHKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILFDKFHPGYFGKVGMRRFHLLKNRLHCPTVNVEKIWSLVSAETKEAAEKSKDGKAPIIDVTKSGYFKVLGKGRLPAIPVIVKAKFFSQEAENKIKAVGGACLLTA 148
The following BLAST results are available for this feature:
BLAST of EWM27667.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109938|gb|EWM27667.1|4.761e-102100.00Ribosomal protein L18e/L15P [Nannochloropsis gadit... [more]
gi|553180480|ref|XP_005853411.1|3.210e-101100.00large subunit ribosomal protein L27Ae, partial [Na... [more]
gi|301111414|ref|XP_002904786.1|7.712e-7875.00ribosomal protein L27 [Phytophthora infestans T30-... [more]
gi|298710836|emb|CBJ26345.1|6.124e-7777.70conserved unknown protein [Ectocarpus siliculosus][more]
gi|325186878|emb|CCA21423.1|6.615e-7770.95ribosomal protein L27 putative [Albugo laibachii N... [more]
gi|675211983|ref|XP_008914876.1|1.937e-7673.6560S ribosomal protein L27a [Phytophthora parasitic... [more]
gi|953501152|emb|CEG37522.1|3.068e-7675.0060s ribosomal protein l27a [Plasmopara halstedii][more]
gi|1214702547|gb|OWZ14719.1|7.881e-7674.1560S ribosomal protein L27a, partial [Phytophthora ... [more]
gi|698809084|ref|XP_009837571.1|4.265e-7471.6260S ribosomal protein L27a [Aphanomyces astaci] >g... [more]
gi|669142102|ref|XP_008606613.1|1.774e-7370.9560S ribosomal protein L27a [Saprolegnia diclina VS... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3009rna3009Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications