rna3002, rna3002 (mRNA) Nannochloropsis gaditana

Overview
Namerna3002
Unique Namerna3002
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length375
Alignment locationCM002460.1:450601..451672 +

Link to JBrowse

Properties
Property NameValue
Productpre-mrna-splicing factor
Orig transcript idgnl|cribi|Naga_100104g26.5960.mrna
Orig protein idgnl|cribi|Naga_100104g26.5960
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:450601..451672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100104g26gene2881Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3002rna3002-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27697.1cds2994Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3002 ID=rna3002|Name=rna3002|organism=Nannochloropsis gaditana|type=mRNA|length=375bp
ATGTCAGTAATTGGCACGGCGCTTGGCGCATCTGTGGAGAAATGTGAAAT
CAAGTCGCAGCCGGTCACCACCCACCTTAAGAAAGTACACAGTCGTGGCC
GCGAGGGGAAAGGCGCGCGACGAGGAAGAATCTACCGTGGCAAATTCCCT
CTCTATTGCGGTGAAGATGTCTTGATCCGAGCTCGTGGCGGGCCTCCTCT
ACACCAACACACACAAGGCAGGTCATTTACTCTCAGGATTGAGGAGAATT
ACAATGGTCGTGTGAAATTCATACTGGTCAGAGATAAGGACGGTATATAC
ATTGAGTCAAGAACAAGATATGTTTGTACTTTTCATGAAGGAAGTGAGGG
GTATATGAAGGCGACAGGAGGTTAA
back to top

protein sequence of rna3002

>rna3002-protein ID=rna3002-protein|Name=rna3002|organism=Nannochloropsis gaditana|type=polypeptide|length=257bp
MTTAAKSTWHSKQGEAADLGSWSLGGQTSRQFSVLDMPAHTTLKYRKPGQ
DTVSELQKKDLRIVLDEKEREAHLIKLQERGKGGDLQAREELRHLEAGEA
AATPLLLKDKEELRKAIQRFDDRDDEVDDDDDHAGDRNGEEESDLDSSDD
SDDEDEDEEELLRLELEKIKQEREQARRKQEEEEKAEAAHRKEEEINAAA
LKGNPLLGGGSAQMKRKWNDDVVFKNQSRGEGEKKKKFVNDTIRNPFHKA
FLQRYMK
back to top

mRNA from alignment at CM002460.1:450601..451672+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3002 ID=rna3002|Name=rna3002|organism=Nannochloropsis gaditana|type=mRNA|length=1072bp|location=Sequence derived from alignment at CM002460.1:450601..451672+ (Nannochloropsis gaditana)
TTCATCGATGATTGGCAGTAATTGCGAGCGTCATCCATGTGGATGCATCG
TGGCGATGGCGATGGCTGGTCACGCTCCCCGAATACTCGTGTAGCATGTC
CAGATTAGAACCAAAAACAGAGCCGCGCATCACTCACTTGTCGCTGCCCT
CGTATATTACAGTGAATTGCTTTGCCGAAGCATGACGACAGCAGCCAAAT
CTACATGGCACTCCAAGCAGGGCGAAGCAGCGGACCTGGGCAGCTGGAGC
CTCGGCGGGCAAACATCTCGTCAATTTTCTGTTCTCGACATGCCTGCGCA
CACGACTCTAAAATACCGTAAGCCCGGGCAAGATACCGTTTCCGAGCTTC
AAAAAAAAGATCTTCGGATAGTTTTagacgagaaggagcgggaagCTCAC
TTGATAAAACTGCAGGagcgtgggaaaggaggggacctGCAGGCTCGAGA
AGAGTTACGGCAtttggaggcaggagaggcagCGGCCACGCCCTTGCTAC
taaaggacaaagaggaatTGCGAAAAGCAATACAACGATTTGATGATCGA
GACGATGAggtggatgatgatgacgatCACGCTGGGGACAgaaacgggga
ggaagagagcgactTGGACAGCAGCGATGATagtgacgacgaggatgagg
acgaagaagagctACTGCGGTTGGAACTGGAGAAAATAAAGCAGGAGCGG
GAACAAGCACGTcgaaagcaagaggaagaagaaaaggcagaggccgcgca
ccgaaaggaggaagagattaACGCTGCAGCGCTCAAGGGCAACCCCCTCC
TCGGTGGGGGCAGCGCACAAATGAAGCGCAAGTGGAACGATGACGTGGTT
TTCAAAAACCAGtcgcgaggagaaggcgagaagaagaaaaaattTGTGAA
CGACACAATTCGCAATCCTTTTCACAAGGCGTTTCTGCAGCGATACATGA
AGTAGGTCGATACCCCGGATGGCTGTAGGATGGAATACCTTTTGGCGGTA
CGCATAAGTCAAAGGAATGTGTTGAAAAGTTAAAAGCTTAAAACAAAAAC
GTGTCAATACTTGATTTGCTTA
back to top

Coding sequence (CDS) from alignment at CM002460.1:450601..451672+

>rna3002 ID=rna3002|Name=rna3002|organism=Nannochloropsis gaditana|type=CDS|length=774bp|location=Sequence derived from alignment at CM002460.1:450601..451672+ (Nannochloropsis gaditana)
ATGACGACAGCAGCCAAATCTACATGGCACTCCAAGCAGGGCGAAGCAGC
GGACCTGGGCAGCTGGAGCCTCGGCGGGCAAACATCTCGTCAATTTTCTG
TTCTCGACATGCCTGCGCACACGACTCTAAAATACCGTAAGCCCGGGCAA
GATACCGTTTCCGAGCTTCAAAAAAAAGATCTTCGGATAGTTTTagacga
gaaggagcgggaagCTCACTTGATAAAACTGCAGGagcgtgggaaaggag
gggacctGCAGGCTCGAGAAGAGTTACGGCAtttggaggcaggagaggca
gCGGCCACGCCCTTGCTACtaaaggacaaagaggaatTGCGAAAAGCAAT
ACAACGATTTGATGATCGAGACGATGAggtggatgatgatgacgatCACG
CTGGGGACAgaaacggggaggaagagagcgactTGGACAGCAGCGATGAT
agtgacgacgaggatgaggacgaagaagagctACTGCGGTTGGAACTGGA
GAAAATAAAGCAGGAGCGGGAACAAGCACGTcgaaagcaagaggaagaag
aaaaggcagaggccgcgcaccgaaaggaggaagagattaACGCTGCAGCG
CTCAAGGGCAACCCCCTCCTCGGTGGGGGCAGCGCACAAATGAAGCGCAA
GTGGAACGATGACGTGGTTTTCAAAAACCAGtcgcgaggagaaggcgaga
agaagaaaaaattTGTGAACGACACAATTCGCAATCCTTTTCACAAGGCG
TTTCTGCAGCGATACATGAAGTAG
back to top
Synonyms
Publications