EWM27697.1, cds2994 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27697.1 vs. NCBI_GenBank
Match: gi|585109969|gb|EWM27697.1| (pre-mrna-splicing factor [Nannochloropsis gaditana]) HSP 1 Score: 513.072 bits (1320), Expect = 0.000e+0 Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 0
Query: 1 MTTAAKSTWHSKQGEAADLGSWSLGGQTSRQFSVLDMPAHTTLKYRKPGQDTVSELQKKDLRIVLDEKEREAHLIKLQERGKGGDLQAREELRHLEAGEAAATPLLLKDKEELRKAIQRFDDRDDEVDDDDDHAGDRNGEEESDLDSSDDSDDEDEDEEELLRLELEKIKQEREQARRKQEEEEKAEAAHRKEEEINAAALKGNPLLGGGSAQMKRKWNDDVVFKNQSRGEGEKKKKFVNDTIRNPFHKAFLQRYMK 257
MTTAAKSTWHSKQGEAADLGSWSLGGQTSRQFSVLDMPAHTTLKYRKPGQDTVSELQKKDLRIVLDEKEREAHLIKLQERGKGGDLQAREELRHLEAGEAAATPLLLKDKEELRKAIQRFDDRDDEVDDDDDHAGDRNGEEESDLDSSDDSDDEDEDEEELLRLELEKIKQEREQARRKQEEEEKAEAAHRKEEEINAAALKGNPLLGGGSAQMKRKWNDDVVFKNQSRGEGEKKKKFVNDTIRNPFHKAFLQRYMK
Sbjct: 1 MTTAAKSTWHSKQGEAADLGSWSLGGQTSRQFSVLDMPAHTTLKYRKPGQDTVSELQKKDLRIVLDEKEREAHLIKLQERGKGGDLQAREELRHLEAGEAAATPLLLKDKEELRKAIQRFDDRDDEVDDDDDHAGDRNGEEESDLDSSDDSDDEDEDEEELLRLELEKIKQEREQARRKQEEEEKAEAAHRKEEEINAAALKGNPLLGGGSAQMKRKWNDDVVFKNQSRGEGEKKKKFVNDTIRNPFHKAFLQRYMK 257
BLAST of EWM27697.1 vs. NCBI_GenBank
Match: gi|698788750|ref|XP_009827407.1| (hypothetical protein H257_04539 [Aphanomyces astaci] >gi|574117254|gb|ETV82736.1| hypothetical protein H257_04539 [Aphanomyces astaci]) HSP 1 Score: 132.88 bits (333), Expect = 2.208e-34 Identity = 115/263 (43.73%), Postives = 156/263 (59.32%), Query Frame = 0
Query: 1 MTTAAKSTWHSKQGEAADLGSWSLGGQTSRQFSVLDMPAHTTLKYRKPGQDTVSELQKKDLRIVLDEKEREAHLIKLQERGKGGDLQAREELRHLEAGEAAATPLLLKDKEELRKAIQRFDDRDDEVDDDDDHAGDRNGEEESDLDSSDDSDDEDEDEEELLRLELEKIKQEREQARRKQEEEEKAEAAHRKEEEINAAALKGNPLLG------GGSAQMKRKWNDDVVFKNQSRGEGEKKKKFVNDTIRNPFHKAFLQRYMK 257
MTTAA+ TW++ G+ + G W+ GGQ S QFS D+P H LK R+ GQ TV EL+ +DL+ L ++ER+ L+E+GK D+ ++ LR E LLLK E ++DR EV D A D + +SD DS D D EDE+EE + LE K ++E E+ +++ + E AE + RKEE L GNPL GSA +KRKWNDDVVFKNQ+R E E KK+F+NDTIRN FH+ FL+ Y++
Sbjct: 1 MTTAARPTWNAAVGQKNE-GGWNSGGQVSMQFSARDLPGHKKLKTRQLGQGTVDELELRDLKSELTDRERKY----LEEKGKVVDVAQQKILRLKEN-----KMLLLKGDE--------WEDRAKEVQTQYDDADDDTRQNDSDDDSDSDDDSEDEEEELMRELEKIKKEREEERLKKEAADRE-AEESLRKEE-----ILLGNPLTSRQSSNPSGSATIKRKWNDDVVFKNQTRNEPETKKRFINDTIRNDFHRRFLKTYIQ 239
BLAST of EWM27697.1 vs. NCBI_GenBank
Match: gi|727632068|ref|XP_010487068.1| (PREDICTED: protein CWC15 homolog [Camelina sativa]) HSP 1 Score: 132.494 bits (332), Expect = 3.206e-34 Identity = 103/262 (39.31%), Postives = 150/262 (57.25%), Query Frame = 0
Query: 1 MTTAAKSTWHSKQGEAADLGSWSLGGQTSRQFSVLDMPAHTTLKYRKPGQDTVSELQKKDLRIVLDEKEREAHLIKLQERGKGGDLQAREELRHLEAGEAAATPLLL----KDKEELRKAIQRFDDRDDEVDDDDDHAGDRNGEEESDLDSSDDSDDEDEDEEELLRLELEKIKQEREQARRKQEEEEKAEAAHRKEEEINAAALKGNPLLGGGSA-QMKRKWNDDVVFKNQSRGEGEKKKKFVNDTIRNPFHKAFLQRYMK 257
MTTAA+ TW +G G+ G S+++S D+ AHTTLK R+ GQ T EL+KK+LR L+++ER ++++ E + LLL KD E+ R R+ + DD D ++ G+E D +DED+ E L EL++IK+ER + R ++E+ E+ E + KEEE+ LKGNPLL ++ +KR+W+DDVVFKNQ+RGE + K+F+NDTIR+ FH+ FLQRYMK
Sbjct: 1 MTTAARPTWAPAKGGNEQGGARIFG--PSQKYSSRDVAAHTTLKPRREGQHTQEELKKKNLRDELEDRERR-------------HFSSKDKSYSDERDSRRGSQLLLEGSKKDPED------RIYARNVDADDSDGDNNNKGGDESDDESDD-----DDEDDTEALMAELDQIKKERVEERLRKEKLEQMEELNAKEEEL----LKGNPLLNAPTSFNVKRRWDDDVVFKNQARGEMKAPKRFINDTIRSDFHRKFLQRYMK 232
BLAST of EWM27697.1 vs. NCBI_GenBank
Match: gi|675167873|ref|XP_008892821.1| (hypothetical protein PPTG_01328 [Phytophthora parasitica INRA-310] >gi|568106350|gb|ETN20980.1| hypothetical protein PPTG_01328 [Phytophthora parasitica INRA-310]) HSP 1 Score: 132.109 bits (331), Expect = 5.749e-34 Identity = 118/264 (44.70%), Postives = 159/264 (60.23%), Query Frame = 0
Query: 1 MTTAAKSTWHSKQGEAADLGSWSLGGQTSRQFSVLDMPAHTTLKYRKPGQDTVSELQKKDLRIVLDEKEREAHLIKLQERGKGGDLQAREELRHLEAGEAAATPLLLKDKE------ELRKAIQRFDDRDDEVDDDDDHAGDRNGEEESDLDSSDDSDDEDEDEEELLRLELEKIKQEREQARRKQEEEEKAEAAHRKEEEINAAALKGNPLL--GGGSAQMKRKWNDDVVFKNQSRGEGEKKKKFVNDTIRNPFHKAFLQRYM 256
MTTA + TWH+ G++ + G W GG+ S Q S D+PAH LK R+ GQ T +E++ DLR L+ KE + L E+G+ D A+++LR LE + LLL D E +L+K ++DD DD + D SD D++++E EL+R ELEKIKQERE+ R + EEEE+ A + EEI L+GNPL GSA+MKR+WNDDVVFKNQSR E E KK+F+NDTIRN FH+ FL +Y+
Sbjct: 1 MTTAHRPTWHAAVGQSNE-GGWHAGGKLSDQVSARDLPAHKRLKMRQVGQGTANEVELLDLREELERKEEKYEL----EKGRKKDT-AQDKLRRLEENKKI---LLLGDAEADEKESQLKKVASKYDDADDG-------------ADSEDSSDSDSDSDDEDEEAELMR-ELEKIKQEREEERLRIEEEERKAAEQQSREEI----LQGNPLTQQAAGSAKMKRRWNDDVVFKNQSRNEPEVKKRFINDTIRNDFHRRFLSKYI 237
BLAST of EWM27697.1 vs. NCBI_GenBank
Match: gi|727584309|ref|XP_010465135.1| (PREDICTED: protein CWC15 homolog [Camelina sativa]) HSP 1 Score: 131.339 bits (329), Expect = 8.128e-34 Identity = 109/262 (41.60%), Postives = 156/262 (59.54%), Query Frame = 0
Query: 1 MTTAAKSTWHSKQGEAADLGSWSLGGQTSRQFSVLDMPAHTTLKYRKPGQDTVSELQKKDLRIVLDEKEREAHLIKLQERGKGGDLQAREELRHLEAGEAAATPLLL----KDKEELRKAIQRFDDRDDEVDDDDDHAGDRNGEEESDLDSSDDSDDEDEDEEELLRLELEKIKQEREQARRKQEEEEKAEAAHRKEEEINAAALKGNPLLGGGSA-QMKRKWNDDVVFKNQSRGEGEKKKKFVNDTIRNPFHKAFLQRYMK 257
MTTAA+ TW +G G+ G S+++S D+ AHTTLK R+ GQ T EL+KK+LR L+++ER ++++ E + LLL KD E+ R R+ + DD D GD N + D +S D+SDD+DED+ E L EL++IK+ER + R ++E+ E+ E + KEEE+ LKGNPLL ++ +KR+W+DDVVFKNQ+RGE + K+F+NDTIR+ FH+ FLQRYMK
Sbjct: 1 MTTAARPTWAPAKGGNEQGGARIFG--PSQKYSSRDVAAHTTLKPRREGQHTQEELKKKNLRDELEDRERR-------------HFSSKDKSYSDERDSRRGSQLLLEGFKKDPED------RIYARNVDADDSD---GDINNK--GDDESDDESDDDDEDDTEALMAELDQIKKERVEERLRKEKLEQMEELNAKEEEL----LKGNPLLNAPTSFNVKRRWDDDVVFKNQARGEMKAPKRFINDTIRSDFHRKFLQRYMK 232
BLAST of EWM27697.1 vs. NCBI_GenBank
Match: gi|301095922|ref|XP_002897060.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262108489|gb|EEY66541.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 131.339 bits (329), Expect = 1.096e-33 Identity = 113/265 (42.64%), Postives = 157/265 (59.25%), Query Frame = 0
Query: 1 MTTAAKSTWHSKQGEAADLGSWSLGGQTSRQFSVLDMPAHTTLKYRKPGQDTVSELQKKDLRIVLDEKEREAHLIKLQERGKGGDLQAREELRHLEAGEAAATPLLLKDKE------ELRKAIQRFDDRDDEVDDDDDHAGDRNGEEESDLDSSDDSDDEDEDEEELLRLELEKIKQEREQARRKQEEEEKAEAAHRKEEEINAAALKGNPLL---GGGSAQMKRKWNDDVVFKNQSRGEGEKKKKFVNDTIRNPFHKAFLQRYM 256
MTTA + TWH+ G++ + G W GG+ S Q S D+PAH LK R+ GQ T +E++ DLR L+ KE + + E+G+ D A+++LR LE + LLL D E +L++ +++D DD G SD D++++E EL+R ELEKIKQERE+ R ++EEE + + EEI L+GNPL GSA+MKR+WNDDVVFKNQSR E E KK+F+NDTIRN FH+ FL +Y+
Sbjct: 1 MTTAHRPTWHAAVGQSNE-GGWHAGGKLSDQVSARDLPAHKRLKMRQVGQGTANEVELLDLREELERKEEKYEV----EKGRKKDT-AQDKLRRLEENKKI---LLLGDAEADAKESQLKEVASKYNDADD-------------GAGSEASSDSDSDSDDEDEEAELMR-ELEKIKQEREEERLRKEEEARKTVELQSREEI----LQGNPLTQQQAAGSAKMKRRWNDDVVFKNQSRNEPEVKKRFINDTIRNDFHRRFLNKYI 238
BLAST of EWM27697.1 vs. NCBI_GenBank
Match: gi|566022801|gb|ETI45712.1| (hypothetical protein F443_09806 [Phytophthora parasitica P1569] >gi|567960091|gb|ETK85655.1| hypothetical protein L915_09614 [Phytophthora parasitica] >gi|567988817|gb|ETL39089.1| hypothetical protein L916_09513 [Phytophthora parasitica] >gi|568018025|gb|ETL92202.1| hypothetical protein L917_09444 [Phytophthora parasitica] >gi|568048455|gb|ETM45507.1| hypothetical protein L914_09480 [Phytophthora parasitica] >gi|570326406|gb|ETO74354.1| hypothetical protein F444_09904 [Phytophthora parasitica P1976] >gi|570950267|gb|ETP15524.1| hypothetical protein F441_09751 [Phytophthora parasitica CJ01A1] >gi|570983842|gb|ETP43598.1| hypothetical protein F442_09708 [Phytophthora parasitica P10297]) HSP 1 Score: 130.954 bits (328), Expect = 1.504e-33 Identity = 118/264 (44.70%), Postives = 160/264 (60.61%), Query Frame = 0
Query: 1 MTTAAKSTWHSKQGEAADLGSWSLGGQTSRQFSVLDMPAHTTLKYRKPGQDTVSELQKKDLRIVLDEKEREAHLIKLQERGKGGDLQAREELRHLEAGEAAATPLLLKDKE------ELRKAIQRFDDRDDEVDDDDDHAGDRNGEEESDLDSSDDSDDEDEDEEELLRLELEKIKQEREQARRKQEEEEKAEAAHRKEEEINAAALKGNPLL--GGGSAQMKRKWNDDVVFKNQSRGEGEKKKKFVNDTIRNPFHKAFLQRYM 256
MTTA + TWH+ G++ + G W GG+ S Q S D+PAH LK R+ GQ T +E++ DLR L+ KE + L E+G+ D A+++LR LE + LLL D E +L+K ++DD DD + D SD D++++E EL+R ELEKIKQERE+ R ++EEEE+ A + EEI L+GNPL GSA+MKR+WNDDVVFKNQSR E E KK+F+NDTIRN FH+ FL +Y+
Sbjct: 1 MTTAHRPTWHAAVGQSNE-GGWHAGGKLSDQVSARDLPAHKRLKMRQVGQGTANEVELLDLREELERKEEKYEL----EKGRKKDT-AQDKLRRLEENKKI---LLLGDAEADEKESQLKKVASKYDDADDG-------------ADSEDSSDSDSDSDDEDEEAELMR-ELEKIKQEREEERLRKEEEERKAAEQQSREEI----LQGNPLTQQAAGSAKMKRRWNDDVVFKNQSRNEPEVKKRFINDTIRNDFHRRFLSKYI 237
BLAST of EWM27697.1 vs. NCBI_GenBank
Match: gi|695415475|ref|XP_009526569.1| (hypothetical protein PHYSODRAFT_346188 [Phytophthora sojae] >gi|348677694|gb|EGZ17511.1| hypothetical protein PHYSODRAFT_346188 [Phytophthora sojae]) HSP 1 Score: 130.183 bits (326), Expect = 2.659e-33 Identity = 118/260 (45.38%), Postives = 159/260 (61.15%), Query Frame = 0
Query: 1 MTTAAKSTWHSKQGEAADLGSWSLGGQTSRQFSVLDMPAHTTLKYRKPGQDTVSELQKKDLRIVLDEKEREAHLIKLQERGKGGDLQAREELRHLEAGEAAATPLLLKDKEELRKAIQRFDDRDDEVDDDDDHAGDRNGEEESDLDSSDDSDDEDEDEEELLRLELEKIKQEREQARRKQEEEEKAEAAHRKEEEINAAALKGNPLL---GGGSAQMKRKWNDDVVFKNQSRGEGEKKKKFVNDTIRNPFHKAFLQRYMK 257
MTTA + TWH+ G++ + G W GG+ S Q S D+PAH LK R+ GQ T +E++ DLR L+ KE + QE+G+ D A+++LR LE + LLL D E D+R+ ++ D + +S+ S DSD +DEDEE L ELEKIKQERE+ R ++EEEE+ A + EEI L+GNPL GSA+MKR+WNDDVVFKNQSR E E KK+F+NDTIRN FH+ FL +Y++
Sbjct: 1 MTTAHRPTWHAAVGQSNE-GGWHAGGKLSEQTSARDLPAHKRLKMRQVGQGTANEVELLDLREELERKEEKHE----QEKGRKKDT-AQDKLRRLEENKKI---LLLGDAEA--------DERESQLKKVASKYDDADDGADSEDSSDSDSDSDDEDEEAELMRELEKIKQEREEERLRKEEEERKAAEQQSREEI----LQGNPLTQQQAAGSAKMKRRWNDDVVFKNQSRNEPEVKKRFINDTIRNDFHRRFLNKYIQ 239
BLAST of EWM27697.1 vs. NCBI_GenBank
Match: gi|1214711649|gb|OWZ22644.1| (hypothetical protein PHMEG_0002623 [Phytophthora megakarya]) HSP 1 Score: 129.798 bits (325), Expect = 4.015e-33 Identity = 117/259 (45.17%), Postives = 159/259 (61.39%), Query Frame = 0
Query: 1 MTTAAKSTWHSKQGEAADLGSWSLGGQTSRQFSVLDMPAHTTLKYRKPGQDTVSELQKKDLRIVLDEKEREAHLIKLQERGKGGDLQAREELRHLEAGEAAATPLLLKDKEELRKAIQRFDDRDDEVDDDDDHAGDRNGEEESDLDSSDDSDDEDEDEEELLRLELEKIKQEREQARRKQEEEEKAEAAHRKEEEINAAALKGNPLL--GGGSAQMKRKWNDDVVFKNQSRGEGEKKKKFVNDTIRNPFHKAFLQRYMK 257
MTTA + TWH+ G++ + G W GG+ S Q S D+PAH LK R+ GQ T +E++ DLR L+ KE + L E+G+ + A+++LR LE + LLL D E D+R+ ++ D + +S+ S DSD +DEDEE L ELEKIKQERE+ R ++EEEE+ A + EEI L+GNPL GSA+MKR+WNDDVVFKNQSR E E KK+F+NDTIRN FH+ FL +Y++
Sbjct: 1 MTTAHRPTWHAAVGQSNE-GGWHAGGKLSDQVSARDLPAHKRLKTRQVGQGTANEVELLDLREELERKEEKHEL----EKGRKKN-SAQDKLRRLEENKKI---LLLGDAEA--------DERESQLKKVASKYNDADDGADSEDSSDSDSDSDDEDEEAELMRELEKIKQEREEERLRKEEEERKAAEQQSREEI----LQGNPLTQQAAGSAKMKRRWNDDVVFKNQSRNEPELKKRFINDTIRNDFHRRFLNKYIQ 238
BLAST of EWM27697.1 vs. NCBI_GenBank
Match: gi|125553730|gb|EAY99335.1| (hypothetical protein OsI_21306 [Oryza sativa Indica Group]) HSP 1 Score: 129.413 bits (324), Expect = 4.174e-33 Identity = 104/260 (40.00%), Postives = 150/260 (57.69%), Query Frame = 0
Query: 1 MTTAAKSTWHSKQGEAADLGSWSLGGQTSRQFSVLDMPAHTTLKYRKPGQDTVSELQKKDLRIVLDEKEREAHLIKLQERGKGGDLQAREELRHLEAGEAAATPLLLKDKEELRKAIQRFDDRDDEVDDDDDHAGDRNGEEESDLDSSDDSDDEDEDEEELLRLELEKIKQEREQARRKQEEEEKAEAAHRKEEEINAAALKGNPLLG---GGSAQMKRKWNDDVVFKNQSRGEGEKKKKFVNDTIRNPFHKAFLQRYMK 257
MTTAA+ TW +G G+ G S+++S D+ AHTTLK RK GQ T ELQK++LR L+E+ER+ + K + + D + +T LLL+ R+A + R+ + DD D E D D DD+D+D+ E L ELE+IK+ER + + ++E ++ E A KE E+ ++GNPL+ GS +KR+W+DDVVFKNQ+RGE + K+F+NDTIR+ FH+ FLQRYMK
Sbjct: 1 MTTAARPTWAPAKGGNEQGGTRIFG--PSQKYSSRDLAAHTTLKPRKEGQHTQEELQKRNLRDELEERERKHYSSKDKSYAEERDRRK-------------STSLLLEGSR--REAEDKIVPREIDADDSD---------VEPRSDDESDEDDDDDDDTEALMAELERIKKERAEEKLRKERQQAEEEAKMKEAEL----MRGNPLININNAGSFNVKRRWDDDVVFKNQARGETKTPKRFINDTIRSDFHRKFLQRYMK 230 The following BLAST results are available for this feature:
BLAST of EWM27697.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|