EWM27697.1, cds2994 (CDS) Nannochloropsis gaditana

Overview
NameEWM27697.1
Unique Namecds2994
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:450782..451555 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27697.1
Productpre-mrna-splicing factor
Orig transcript idgnl|cribi|Naga_100104g26.5960.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:450782..451555 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0000398mRNA splicing, via spliceosome
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005681spliceosomal complex
Vocabulary: INTERPRO
TermDefinition
IPR006973Cwf_Cwc_15
Homology
BLAST of EWM27697.1 vs. NCBI_GenBank
Match: gi|585109969|gb|EWM27697.1| (pre-mrna-splicing factor [Nannochloropsis gaditana])

HSP 1 Score: 513.072 bits (1320), Expect = 0.000e+0
Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 0
Query:    1 MTTAAKSTWHSKQGEAADLGSWSLGGQTSRQFSVLDMPAHTTLKYRKPGQDTVSELQKKDLRIVLDEKEREAHLIKLQERGKGGDLQAREELRHLEAGEAAATPLLLKDKEELRKAIQRFDDRDDEVDDDDDHAGDRNGEEESDLDSSDDSDDEDEDEEELLRLELEKIKQEREQARRKQEEEEKAEAAHRKEEEINAAALKGNPLLGGGSAQMKRKWNDDVVFKNQSRGEGEKKKKFVNDTIRNPFHKAFLQRYMK 257
            MTTAAKSTWHSKQGEAADLGSWSLGGQTSRQFSVLDMPAHTTLKYRKPGQDTVSELQKKDLRIVLDEKEREAHLIKLQERGKGGDLQAREELRHLEAGEAAATPLLLKDKEELRKAIQRFDDRDDEVDDDDDHAGDRNGEEESDLDSSDDSDDEDEDEEELLRLELEKIKQEREQARRKQEEEEKAEAAHRKEEEINAAALKGNPLLGGGSAQMKRKWNDDVVFKNQSRGEGEKKKKFVNDTIRNPFHKAFLQRYMK
Sbjct:    1 MTTAAKSTWHSKQGEAADLGSWSLGGQTSRQFSVLDMPAHTTLKYRKPGQDTVSELQKKDLRIVLDEKEREAHLIKLQERGKGGDLQAREELRHLEAGEAAATPLLLKDKEELRKAIQRFDDRDDEVDDDDDHAGDRNGEEESDLDSSDDSDDEDEDEEELLRLELEKIKQEREQARRKQEEEEKAEAAHRKEEEINAAALKGNPLLGGGSAQMKRKWNDDVVFKNQSRGEGEKKKKFVNDTIRNPFHKAFLQRYMK 257          
BLAST of EWM27697.1 vs. NCBI_GenBank
Match: gi|698788750|ref|XP_009827407.1| (hypothetical protein H257_04539 [Aphanomyces astaci] >gi|574117254|gb|ETV82736.1| hypothetical protein H257_04539 [Aphanomyces astaci])

HSP 1 Score: 132.88 bits (333), Expect = 2.208e-34
Identity = 115/263 (43.73%), Postives = 156/263 (59.32%), Query Frame = 0
Query:    1 MTTAAKSTWHSKQGEAADLGSWSLGGQTSRQFSVLDMPAHTTLKYRKPGQDTVSELQKKDLRIVLDEKEREAHLIKLQERGKGGDLQAREELRHLEAGEAAATPLLLKDKEELRKAIQRFDDRDDEVDDDDDHAGDRNGEEESDLDSSDDSDDEDEDEEELLRLELEKIKQEREQARRKQEEEEKAEAAHRKEEEINAAALKGNPLLG------GGSAQMKRKWNDDVVFKNQSRGEGEKKKKFVNDTIRNPFHKAFLQRYMK 257
            MTTAA+ TW++  G+  + G W+ GGQ S QFS  D+P H  LK R+ GQ TV EL+ +DL+  L ++ER+     L+E+GK  D+  ++ LR  E        LLLK  E        ++DR  EV    D A D   + +SD DS  D D EDE+EE +  LE  K ++E E+ +++  + E AE + RKEE      L GNPL         GSA +KRKWNDDVVFKNQ+R E E KK+F+NDTIRN FH+ FL+ Y++
Sbjct:    1 MTTAARPTWNAAVGQKNE-GGWNSGGQVSMQFSARDLPGHKKLKTRQLGQGTVDELELRDLKSELTDRERKY----LEEKGKVVDVAQQKILRLKEN-----KMLLLKGDE--------WEDRAKEVQTQYDDADDDTRQNDSDDDSDSDDDSEDEEEELMRELEKIKKEREEERLKKEAADRE-AEESLRKEE-----ILLGNPLTSRQSSNPSGSATIKRKWNDDVVFKNQTRNEPETKKRFINDTIRNDFHRRFLKTYIQ 239          
BLAST of EWM27697.1 vs. NCBI_GenBank
Match: gi|727632068|ref|XP_010487068.1| (PREDICTED: protein CWC15 homolog [Camelina sativa])

HSP 1 Score: 132.494 bits (332), Expect = 3.206e-34
Identity = 103/262 (39.31%), Postives = 150/262 (57.25%), Query Frame = 0
Query:    1 MTTAAKSTWHSKQGEAADLGSWSLGGQTSRQFSVLDMPAHTTLKYRKPGQDTVSELQKKDLRIVLDEKEREAHLIKLQERGKGGDLQAREELRHLEAGEAAATPLLL----KDKEELRKAIQRFDDRDDEVDDDDDHAGDRNGEEESDLDSSDDSDDEDEDEEELLRLELEKIKQEREQARRKQEEEEKAEAAHRKEEEINAAALKGNPLLGGGSA-QMKRKWNDDVVFKNQSRGEGEKKKKFVNDTIRNPFHKAFLQRYMK 257
            MTTAA+ TW   +G     G+   G   S+++S  D+ AHTTLK R+ GQ T  EL+KK+LR  L+++ER                 ++++    E      + LLL    KD E+      R   R+ + DD D    ++ G+E  D         +DED+ E L  EL++IK+ER + R ++E+ E+ E  + KEEE+    LKGNPLL   ++  +KR+W+DDVVFKNQ+RGE +  K+F+NDTIR+ FH+ FLQRYMK
Sbjct:    1 MTTAARPTWAPAKGGNEQGGARIFG--PSQKYSSRDVAAHTTLKPRREGQHTQEELKKKNLRDELEDRERR-------------HFSSKDKSYSDERDSRRGSQLLLEGSKKDPED------RIYARNVDADDSDGDNNNKGGDESDDESDD-----DDEDDTEALMAELDQIKKERVEERLRKEKLEQMEELNAKEEEL----LKGNPLLNAPTSFNVKRRWDDDVVFKNQARGEMKAPKRFINDTIRSDFHRKFLQRYMK 232          
BLAST of EWM27697.1 vs. NCBI_GenBank
Match: gi|675167873|ref|XP_008892821.1| (hypothetical protein PPTG_01328 [Phytophthora parasitica INRA-310] >gi|568106350|gb|ETN20980.1| hypothetical protein PPTG_01328 [Phytophthora parasitica INRA-310])

HSP 1 Score: 132.109 bits (331), Expect = 5.749e-34
Identity = 118/264 (44.70%), Postives = 159/264 (60.23%), Query Frame = 0
Query:    1 MTTAAKSTWHSKQGEAADLGSWSLGGQTSRQFSVLDMPAHTTLKYRKPGQDTVSELQKKDLRIVLDEKEREAHLIKLQERGKGGDLQAREELRHLEAGEAAATPLLLKDKE------ELRKAIQRFDDRDDEVDDDDDHAGDRNGEEESDLDSSDDSDDEDEDEEELLRLELEKIKQEREQARRKQEEEEKAEAAHRKEEEINAAALKGNPLL--GGGSAQMKRKWNDDVVFKNQSRGEGEKKKKFVNDTIRNPFHKAFLQRYM 256
            MTTA + TWH+  G++ + G W  GG+ S Q S  D+PAH  LK R+ GQ T +E++  DLR  L+ KE +  L    E+G+  D  A+++LR LE  +     LLL D E      +L+K   ++DD DD               +  D   SD   D++++E EL+R ELEKIKQERE+ R + EEEE+  A  +  EEI    L+GNPL     GSA+MKR+WNDDVVFKNQSR E E KK+F+NDTIRN FH+ FL +Y+
Sbjct:    1 MTTAHRPTWHAAVGQSNE-GGWHAGGKLSDQVSARDLPAHKRLKMRQVGQGTANEVELLDLREELERKEEKYEL----EKGRKKDT-AQDKLRRLEENKKI---LLLGDAEADEKESQLKKVASKYDDADDG-------------ADSEDSSDSDSDSDDEDEEAELMR-ELEKIKQEREEERLRIEEEERKAAEQQSREEI----LQGNPLTQQAAGSAKMKRRWNDDVVFKNQSRNEPEVKKRFINDTIRNDFHRRFLSKYI 237          
BLAST of EWM27697.1 vs. NCBI_GenBank
Match: gi|727584309|ref|XP_010465135.1| (PREDICTED: protein CWC15 homolog [Camelina sativa])

HSP 1 Score: 131.339 bits (329), Expect = 8.128e-34
Identity = 109/262 (41.60%), Postives = 156/262 (59.54%), Query Frame = 0
Query:    1 MTTAAKSTWHSKQGEAADLGSWSLGGQTSRQFSVLDMPAHTTLKYRKPGQDTVSELQKKDLRIVLDEKEREAHLIKLQERGKGGDLQAREELRHLEAGEAAATPLLL----KDKEELRKAIQRFDDRDDEVDDDDDHAGDRNGEEESDLDSSDDSDDEDEDEEELLRLELEKIKQEREQARRKQEEEEKAEAAHRKEEEINAAALKGNPLLGGGSA-QMKRKWNDDVVFKNQSRGEGEKKKKFVNDTIRNPFHKAFLQRYMK 257
            MTTAA+ TW   +G     G+   G   S+++S  D+ AHTTLK R+ GQ T  EL+KK+LR  L+++ER                 ++++    E      + LLL    KD E+      R   R+ + DD D   GD N +   D +S D+SDD+DED+ E L  EL++IK+ER + R ++E+ E+ E  + KEEE+    LKGNPLL   ++  +KR+W+DDVVFKNQ+RGE +  K+F+NDTIR+ FH+ FLQRYMK
Sbjct:    1 MTTAARPTWAPAKGGNEQGGARIFG--PSQKYSSRDVAAHTTLKPRREGQHTQEELKKKNLRDELEDRERR-------------HFSSKDKSYSDERDSRRGSQLLLEGFKKDPED------RIYARNVDADDSD---GDINNK--GDDESDDESDDDDEDDTEALMAELDQIKKERVEERLRKEKLEQMEELNAKEEEL----LKGNPLLNAPTSFNVKRRWDDDVVFKNQARGEMKAPKRFINDTIRSDFHRKFLQRYMK 232          
BLAST of EWM27697.1 vs. NCBI_GenBank
Match: gi|301095922|ref|XP_002897060.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262108489|gb|EEY66541.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 131.339 bits (329), Expect = 1.096e-33
Identity = 113/265 (42.64%), Postives = 157/265 (59.25%), Query Frame = 0
Query:    1 MTTAAKSTWHSKQGEAADLGSWSLGGQTSRQFSVLDMPAHTTLKYRKPGQDTVSELQKKDLRIVLDEKEREAHLIKLQERGKGGDLQAREELRHLEAGEAAATPLLLKDKE------ELRKAIQRFDDRDDEVDDDDDHAGDRNGEEESDLDSSDDSDDEDEDEEELLRLELEKIKQEREQARRKQEEEEKAEAAHRKEEEINAAALKGNPLL---GGGSAQMKRKWNDDVVFKNQSRGEGEKKKKFVNDTIRNPFHKAFLQRYM 256
            MTTA + TWH+  G++ + G W  GG+ S Q S  D+PAH  LK R+ GQ T +E++  DLR  L+ KE +  +    E+G+  D  A+++LR LE  +     LLL D E      +L++   +++D DD             G        SD   D++++E EL+R ELEKIKQERE+ R ++EEE +     +  EEI    L+GNPL      GSA+MKR+WNDDVVFKNQSR E E KK+F+NDTIRN FH+ FL +Y+
Sbjct:    1 MTTAHRPTWHAAVGQSNE-GGWHAGGKLSDQVSARDLPAHKRLKMRQVGQGTANEVELLDLREELERKEEKYEV----EKGRKKDT-AQDKLRRLEENKKI---LLLGDAEADAKESQLKEVASKYNDADD-------------GAGSEASSDSDSDSDDEDEEAELMR-ELEKIKQEREEERLRKEEEARKTVELQSREEI----LQGNPLTQQQAAGSAKMKRRWNDDVVFKNQSRNEPEVKKRFINDTIRNDFHRRFLNKYI 238          
BLAST of EWM27697.1 vs. NCBI_GenBank
Match: gi|566022801|gb|ETI45712.1| (hypothetical protein F443_09806 [Phytophthora parasitica P1569] >gi|567960091|gb|ETK85655.1| hypothetical protein L915_09614 [Phytophthora parasitica] >gi|567988817|gb|ETL39089.1| hypothetical protein L916_09513 [Phytophthora parasitica] >gi|568018025|gb|ETL92202.1| hypothetical protein L917_09444 [Phytophthora parasitica] >gi|568048455|gb|ETM45507.1| hypothetical protein L914_09480 [Phytophthora parasitica] >gi|570326406|gb|ETO74354.1| hypothetical protein F444_09904 [Phytophthora parasitica P1976] >gi|570950267|gb|ETP15524.1| hypothetical protein F441_09751 [Phytophthora parasitica CJ01A1] >gi|570983842|gb|ETP43598.1| hypothetical protein F442_09708 [Phytophthora parasitica P10297])

HSP 1 Score: 130.954 bits (328), Expect = 1.504e-33
Identity = 118/264 (44.70%), Postives = 160/264 (60.61%), Query Frame = 0
Query:    1 MTTAAKSTWHSKQGEAADLGSWSLGGQTSRQFSVLDMPAHTTLKYRKPGQDTVSELQKKDLRIVLDEKEREAHLIKLQERGKGGDLQAREELRHLEAGEAAATPLLLKDKE------ELRKAIQRFDDRDDEVDDDDDHAGDRNGEEESDLDSSDDSDDEDEDEEELLRLELEKIKQEREQARRKQEEEEKAEAAHRKEEEINAAALKGNPLL--GGGSAQMKRKWNDDVVFKNQSRGEGEKKKKFVNDTIRNPFHKAFLQRYM 256
            MTTA + TWH+  G++ + G W  GG+ S Q S  D+PAH  LK R+ GQ T +E++  DLR  L+ KE +  L    E+G+  D  A+++LR LE  +     LLL D E      +L+K   ++DD DD               +  D   SD   D++++E EL+R ELEKIKQERE+ R ++EEEE+  A  +  EEI    L+GNPL     GSA+MKR+WNDDVVFKNQSR E E KK+F+NDTIRN FH+ FL +Y+
Sbjct:    1 MTTAHRPTWHAAVGQSNE-GGWHAGGKLSDQVSARDLPAHKRLKMRQVGQGTANEVELLDLREELERKEEKYEL----EKGRKKDT-AQDKLRRLEENKKI---LLLGDAEADEKESQLKKVASKYDDADDG-------------ADSEDSSDSDSDSDDEDEEAELMR-ELEKIKQEREEERLRKEEEERKAAEQQSREEI----LQGNPLTQQAAGSAKMKRRWNDDVVFKNQSRNEPEVKKRFINDTIRNDFHRRFLSKYI 237          
BLAST of EWM27697.1 vs. NCBI_GenBank
Match: gi|695415475|ref|XP_009526569.1| (hypothetical protein PHYSODRAFT_346188 [Phytophthora sojae] >gi|348677694|gb|EGZ17511.1| hypothetical protein PHYSODRAFT_346188 [Phytophthora sojae])

HSP 1 Score: 130.183 bits (326), Expect = 2.659e-33
Identity = 118/260 (45.38%), Postives = 159/260 (61.15%), Query Frame = 0
Query:    1 MTTAAKSTWHSKQGEAADLGSWSLGGQTSRQFSVLDMPAHTTLKYRKPGQDTVSELQKKDLRIVLDEKEREAHLIKLQERGKGGDLQAREELRHLEAGEAAATPLLLKDKEELRKAIQRFDDRDDEVDDDDDHAGDRNGEEESDLDSSDDSDDEDEDEEELLRLELEKIKQEREQARRKQEEEEKAEAAHRKEEEINAAALKGNPLL---GGGSAQMKRKWNDDVVFKNQSRGEGEKKKKFVNDTIRNPFHKAFLQRYMK 257
            MTTA + TWH+  G++ + G W  GG+ S Q S  D+PAH  LK R+ GQ T +E++  DLR  L+ KE +      QE+G+  D  A+++LR LE  +     LLL D E         D+R+ ++        D +   +S+  S  DSD +DEDEE  L  ELEKIKQERE+ R ++EEEE+  A  +  EEI    L+GNPL      GSA+MKR+WNDDVVFKNQSR E E KK+F+NDTIRN FH+ FL +Y++
Sbjct:    1 MTTAHRPTWHAAVGQSNE-GGWHAGGKLSEQTSARDLPAHKRLKMRQVGQGTANEVELLDLREELERKEEKHE----QEKGRKKDT-AQDKLRRLEENKKI---LLLGDAEA--------DERESQLKKVASKYDDADDGADSEDSSDSDSDSDDEDEEAELMRELEKIKQEREEERLRKEEEERKAAEQQSREEI----LQGNPLTQQQAAGSAKMKRRWNDDVVFKNQSRNEPEVKKRFINDTIRNDFHRRFLNKYIQ 239          
BLAST of EWM27697.1 vs. NCBI_GenBank
Match: gi|1214711649|gb|OWZ22644.1| (hypothetical protein PHMEG_0002623 [Phytophthora megakarya])

HSP 1 Score: 129.798 bits (325), Expect = 4.015e-33
Identity = 117/259 (45.17%), Postives = 159/259 (61.39%), Query Frame = 0
Query:    1 MTTAAKSTWHSKQGEAADLGSWSLGGQTSRQFSVLDMPAHTTLKYRKPGQDTVSELQKKDLRIVLDEKEREAHLIKLQERGKGGDLQAREELRHLEAGEAAATPLLLKDKEELRKAIQRFDDRDDEVDDDDDHAGDRNGEEESDLDSSDDSDDEDEDEEELLRLELEKIKQEREQARRKQEEEEKAEAAHRKEEEINAAALKGNPLL--GGGSAQMKRKWNDDVVFKNQSRGEGEKKKKFVNDTIRNPFHKAFLQRYMK 257
            MTTA + TWH+  G++ + G W  GG+ S Q S  D+PAH  LK R+ GQ T +E++  DLR  L+ KE +  L    E+G+  +  A+++LR LE  +     LLL D E         D+R+ ++        D +   +S+  S  DSD +DEDEE  L  ELEKIKQERE+ R ++EEEE+  A  +  EEI    L+GNPL     GSA+MKR+WNDDVVFKNQSR E E KK+F+NDTIRN FH+ FL +Y++
Sbjct:    1 MTTAHRPTWHAAVGQSNE-GGWHAGGKLSDQVSARDLPAHKRLKTRQVGQGTANEVELLDLREELERKEEKHEL----EKGRKKN-SAQDKLRRLEENKKI---LLLGDAEA--------DERESQLKKVASKYNDADDGADSEDSSDSDSDSDDEDEEAELMRELEKIKQEREEERLRKEEEERKAAEQQSREEI----LQGNPLTQQAAGSAKMKRRWNDDVVFKNQSRNEPELKKRFINDTIRNDFHRRFLNKYIQ 238          
BLAST of EWM27697.1 vs. NCBI_GenBank
Match: gi|125553730|gb|EAY99335.1| (hypothetical protein OsI_21306 [Oryza sativa Indica Group])

HSP 1 Score: 129.413 bits (324), Expect = 4.174e-33
Identity = 104/260 (40.00%), Postives = 150/260 (57.69%), Query Frame = 0
Query:    1 MTTAAKSTWHSKQGEAADLGSWSLGGQTSRQFSVLDMPAHTTLKYRKPGQDTVSELQKKDLRIVLDEKEREAHLIKLQERGKGGDLQAREELRHLEAGEAAATPLLLKDKEELRKAIQRFDDRDDEVDDDDDHAGDRNGEEESDLDSSDDSDDEDEDEEELLRLELEKIKQEREQARRKQEEEEKAEAAHRKEEEINAAALKGNPLLG---GGSAQMKRKWNDDVVFKNQSRGEGEKKKKFVNDTIRNPFHKAFLQRYMK 257
            MTTAA+ TW   +G     G+   G   S+++S  D+ AHTTLK RK GQ T  ELQK++LR  L+E+ER+ +  K +   +  D +              +T LLL+     R+A  +   R+ + DD D          E   D   D DD+D+D+ E L  ELE+IK+ER + + ++E ++  E A  KE E+    ++GNPL+     GS  +KR+W+DDVVFKNQ+RGE +  K+F+NDTIR+ FH+ FLQRYMK
Sbjct:    1 MTTAARPTWAPAKGGNEQGGTRIFG--PSQKYSSRDLAAHTTLKPRKEGQHTQEELQKRNLRDELEERERKHYSSKDKSYAEERDRRK-------------STSLLLEGSR--REAEDKIVPREIDADDSD---------VEPRSDDESDEDDDDDDDTEALMAELERIKKERAEEKLRKERQQAEEEAKMKEAEL----MRGNPLININNAGSFNVKRRWDDDVVFKNQARGETKTPKRFINDTIRSDFHRKFLQRYMK 230          
The following BLAST results are available for this feature:
BLAST of EWM27697.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109969|gb|EWM27697.1|0.000e+0100.00pre-mrna-splicing factor [Nannochloropsis gaditana... [more]
gi|698788750|ref|XP_009827407.1|2.208e-3443.73hypothetical protein H257_04539 [Aphanomyces astac... [more]
gi|727632068|ref|XP_010487068.1|3.206e-3439.31PREDICTED: protein CWC15 homolog [Camelina sativa][more]
gi|675167873|ref|XP_008892821.1|5.749e-3444.70hypothetical protein PPTG_01328 [Phytophthora para... [more]
gi|727584309|ref|XP_010465135.1|8.128e-3441.60PREDICTED: protein CWC15 homolog [Camelina sativa][more]
gi|301095922|ref|XP_002897060.1|1.096e-3342.64conserved hypothetical protein [Phytophthora infes... [more]
gi|566022801|gb|ETI45712.1|1.504e-3344.70hypothetical protein F443_09806 [Phytophthora para... [more]
gi|695415475|ref|XP_009526569.1|2.659e-3345.38hypothetical protein PHYSODRAFT_346188 [Phytophtho... [more]
gi|1214711649|gb|OWZ22644.1|4.015e-3345.17hypothetical protein PHMEG_0002623 [Phytophthora m... [more]
gi|125553730|gb|EAY99335.1|4.174e-3340.00hypothetical protein OsI_21306 [Oryza sativa Indic... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3002rna3002Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications