rna3001, rna3001 (mRNA) Nannochloropsis gaditana

Overview
Namerna3001
Unique Namerna3001
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length507
Alignment locationCM002460.1:449409..450059 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100104g25.5958.mrna
Orig protein idgnl|cribi|Naga_100104g25.5958
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:449409..450059 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100104g25gene2880Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3001rna3001-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27695.1cds2993Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3001 ID=rna3001|Name=rna3001|organism=Nannochloropsis gaditana|type=mRNA|length=507bp
ATGTACTTTCGAGGTGGCGATATTTTGCGGGAGAACGCTCATGAGCTTTA
CAGCCAGGCACCCTGCTCTCTCTTATTTGAGGCCTTCAACTTTGTAAATG
CCACAAGATATATGCTCGTCTTCGACCCAAAGGAAAAGTTTAATCCATGT
ATTGATGTAGTCCGGAGCAAGATTCCAGAGTCAACTTCAGTGTCGACGCC
ATGTCATAGCATCGGATGTCATATGACTTTACTCGGGCGGGCATCCTACG
TAGTGGTATCAGGATTTACAACGTTTGCGCCGCGCGAGTATGGAAACGCC
ACTATCAAAATCTGTGTAGCGGGTAACACCTCAGCCTTCAAACCATGGAG
TTATACAGAGACTACCAAAATTCAAATGCTAACCACACGTAGCGAGCCTG
TGTTGGACAAGTATAATGTAACGTCTATTCGTGTTTTCATAAATGAAAGT
GCACCACATGAGTGCGGCAGCTCGCAAGCCGAACCCCTCTTCTCCAGCTT
TTTCTGA
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protein sequence of rna3001

>rna3001-protein ID=rna3001-protein|Name=rna3001|organism=Nannochloropsis gaditana|type=polypeptide|length=124bp
MSVIGTALGASVEKCEIKSQPVTTHLKKVHSRGREGKGARRGRIYRGKFP
LYCGEDVLIRARGGPPLHQHTQGRSFTLRIEENYNGRVKFILVRDKDGIY
IESRTRYVCTFHEGSEGYMKATGG
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mRNA from alignment at CM002460.1:449409..450059+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3001 ID=rna3001|Name=rna3001|organism=Nannochloropsis gaditana|type=mRNA|length=651bp|location=Sequence derived from alignment at CM002460.1:449409..450059+ (Nannochloropsis gaditana)
ATGTCAGTAATTGGCACGGCGCTTGGCGCATCTGTGTCATACAAAAAGGA
CTCTTATCATAGTTATCATGATATGTTCTCGCAGTGACACAATAGGGAGA
AATGTGAAATCAAGTCGCAGCCGGTCACCACCCACCTTAAGAAAGTACAC
AGTCGTGGccgcgaggggaaaggcgcgcgacgaggaagaatcTACCGTGG
CAAATTCCCTCTCTATTGCGGTGAAGATGTCTTGATCCGAGCTCGTGGCG
GGCCTCCTCTACACCAACACACACAAGGTGGTTGTCCGTGTTTTTGGCTA
GTGTGGTTGTGTGAGGGGGCTTTCCGTCCTTCAATCGCCCGCCAcgtccc
tcctcacctcctttcAAAACACGCACACGCAGGCAGGTCATTTACTCTCA
GGAGTCCGGCAGCATCGCCACCCAGAGATTCCTAGAGTACCCCATATCCG
AGGATCGCGGGCTAAAGATGTACCcggccaaggcgaaggaTTTCCTCGCG
GAGATCTTCGGGAGTTGAGGAGAATTACAATGGTCGTGTGAAATTCATAC
TGGTCAGAGATAAGGACGGTATATACATTGAGTCAAGAACAAGATATGTT
TGTACTTTTCATGAAGGAAGTGAGGGGTATATGAAGGCGACAGGAGGTTA
A
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Coding sequence (CDS) from alignment at CM002460.1:449409..450059+

>rna3001 ID=rna3001|Name=rna3001|organism=Nannochloropsis gaditana|type=CDS|length=1500bp|location=Sequence derived from alignment at CM002460.1:449409..450059+ (Nannochloropsis gaditana)
ATGTCAGTAATTGGCACGGCGCTTGGCGCATCTGTGGAGAAATGTGAAAT
CAAGTCGCAGCCGGTCACCACCCACCTTAAGAAAGTACACAGTCGTGGcc
gcgaggggaaaggcgcgcgacgaggaagaatcTACCGTGGCAAATTCCCT
CTCTATTGCGGTGAAGATGTCTTGATCCGAGCTCGTGGCGGGCCTCCTCT
ACACCAACACACACAAGGCAGGTCATTTACTCTCAGGATTGAGGAGAATT
ACAATGGTCGTGTGAAATTCATACTGGTCAGAGATAAGGACGGTATATAC
ATTGAGTCAAGAACAAGATATGTTTGTACTTTTCATGAAGGAAGTGAGGG
GTATATGAAGGCGACAGGAGGTTAAATGTCAGTAATTGGCACGGCGCTTG
GCGCATCTGTGGAGAAATGTGAAATCAAGTCGCAGCCGGTCACCACCCAC
CTTAAGAAAGTACACAGTCGTGGccgcgaggggaaaggcgcgcgacgagg
aagaatcTACCGTGGCAAATTCCCTCTCTATTGCGGTGAAGATGTCTTGA
TCCGAGCTCGTGGCGGGCCTCCTCTACACCAACACACACAAGGCAGGTCA
TTTACTCTCAGGATTGAGGAGAATTACAATGGTCGTGTGAAATTCATACT
GGTCAGAGATAAGGACGGTATATACATTGAGTCAAGAACAAGATATGTTT
GTACTTTTCATGAAGGAAGTGAGGGGTATATGAAGGCGACAGGAGGTTAA
ATGTCAGTAATTGGCACGGCGCTTGGCGCATCTGTGGAGAAATGTGAAAT
CAAGTCGCAGCCGGTCACCACCCACCTTAAGAAAGTACACAGTCGTGGcc
gcgaggggaaaggcgcgcgacgaggaagaatcTACCGTGGCAAATTCCCT
CTCTATTGCGGTGAAGATGTCTTGATCCGAGCTCGTGGCGGGCCTCCTCT
ACACCAACACACACAAGGCAGGTCATTTACTCTCAGGATTGAGGAGAATT
ACAATGGTCGTGTGAAATTCATACTGGTCAGAGATAAGGACGGTATATAC
ATTGAGTCAAGAACAAGATATGTTTGTACTTTTCATGAAGGAAGTGAGGG
GTATATGAAGGCGACAGGAGGTTAAATGTCAGTAATTGGCACGGCGCTTG
GCGCATCTGTGGAGAAATGTGAAATCAAGTCGCAGCCGGTCACCACCCAC
CTTAAGAAAGTACACAGTCGTGGccgcgaggggaaaggcgcgcgacgagg
aagaatcTACCGTGGCAAATTCCCTCTCTATTGCGGTGAAGATGTCTTGA
TCCGAGCTCGTGGCGGGCCTCCTCTACACCAACACACACAAGGCAGGTCA
TTTACTCTCAGGATTGAGGAGAATTACAATGGTCGTGTGAAATTCATACT
GGTCAGAGATAAGGACGGTATATACATTGAGTCAAGAACAAGATATGTTT
GTACTTTTCATGAAGGAAGTGAGGGGTATATGAAGGCGACAGGAGGTTAA
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Synonyms
Publications