rna2994, rna2994 (mRNA) Nannochloropsis gaditana

Overview
Namerna2994
Unique Namerna2994
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1683
Alignment locationCM002460.1:437947..438285 +

Link to JBrowse

Properties
Property NameValue
Productsignal recognition particle 9 kda protein
Orig transcript idgnl|cribi|Naga_100104g16.5951.mrna
Orig protein idgnl|cribi|Naga_100104g16.5951
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:437947..438285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100104g16gene2873Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2994rna2994-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27688.1cds2986Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2994 ID=rna2994|Name=rna2994|organism=Nannochloropsis gaditana|type=mRNA|length=1683bp
CCGGTGCAACAATCGGCCTAGACATCTTCAACTCTTTTTTTTGTCACTCG
CTCCCCACCAGTGTTTCTTACTCTCCCTTTTCCACCCTACTTGTCGCCTC
CTCTGCCTTCAGCCCTCCTTCCTCTCGCCCAAACCTCGCCGCCCCCACCG
CTTCTCTTTCGGTCACGCACTGCGAACTTATTGCGCTAATCTTACCTCTC
GTGATCAACTGTACAGAGCAAATAGCTATCGTCGAAAATTCATCAAAGCA
GTGAGGAGAGAGCAGCGGTGAACATGGCACAAGGAAGGGGAGGCTAAACG
CGCCCGACACGGGATACGACCCCATCTCGGTGGGAGGGAGGATGACTACG
CCACTGCGCCTGTGCAGAAATCTGGCCAGGAGGACTATGTCATGGCGGTA
CAACGCCGGTGAGATTTGTCTGCGAGGTGCATCACTGCGTGCTGGAGCTG
GTGCGTACTCTGGCCGCGGGCTGGGCCCTATCCTCCCCAAGTCACTCGAC
TCGGCGCGAAGAGGGTTTAGCGCCTCCCCCTCGCCGCCGCCCACGGGCAC
ACCGTCCGACCTCGCGCCGGTGTCCCAAATCCCACAAATAGATCCCACGA
CGTGGCATGCCTGGGTATTCGACTCCATCCCAGTCCGATCCATGCAAACG
CTCCTGGAGGTGACGCACGAGGCCACGGGATTGCCGTGGTGGGCCTCCAT
CGTCCTCTCCACTCTGGCCTTCCGGCTGGCCCTGCTCCCTGTCGTCCGCT
ACCAAGCCCACGCCCTTGCTCGCCTGGCCCGGGCGGCGCCCCTCGTCCTC
GCTTTGAACAGAGCTCTCTCTAAGCGCCTCGACGGGGTCCGCGCGGGGGA
TTGGGCGGGCACCACAGCAGTGTGCCAAGACTACGCCGCCGGCGTGCGGG
CCGCGCTCAAGCTGCACCAAGTGAGTCTTCTCGCCGCCATCGCCTCTCCG
ATCGTCCAGCTACCTGTGTTCGTAACCTTTGCTCTTGCCAATAGGCGCAT
GATCGACCAGCAGGTCCCGGGCCTGGAGGAGGGGGGGGTTGCCTGGTTCG
AGGACTTGACCGAGGCGGACCCCCTTTTGATCTTGCCTGTGCTGTGCTTA
GGCTCAACTTACCTGAATCTGGAGCTCGGGTTCGCTCGTTTGCATGAGTC
TCAGATAATTCTACGGTTTTTGAAGGACAACTTGCAACTCTTCCTCATTC
TGGGGGCCCCGGTCTCGTCCACCCTGCCAGCTGGGGTCTTCATCTACTGG
TTCACTTCCAGTGTCTACGGGCATGCCCAACATTTCGCCTTGCGAAATCC
TGATGTCCGCCTTCTCTTAGGCTTTCCCACTGTACCCAAAGAGCGGCTTC
AGAGTGGAGGAGCTGCAAAGGAGGGCCCGGCTTCAGGGCACACGGTCTCT
ACTCCTGCAGGGTCCGAGGCTGATGCCGGTGTTTTCGTAGAAAAGCGGAT
CTTTCTGAAGGCTCTGCAAGCTTTGGATGCTTATGAATCTCGCCGTAAAG
CTCGTCTAAAGCAAACAAAAAGCGACGGCGAGGAGCTGAAGAAGCAAGAA
GGGAGTAGGAAGGAAAAGAGTCCGGAGCTTTCGATCCGTCCTGTCTCGAA
ATCGAGAAATTGAGCTCAAGGAGGACGCAGCTCTTAGGAAGGAAAGGCGA
CGAGGAAAAGAAAAACTGGATCTCTGTAAAGCA
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protein sequence of rna2994

>rna2994-protein ID=rna2994-protein|Name=rna2994|organism=Nannochloropsis gaditana|type=polypeptide|length=112bp
MTGTGKKVNTTKATSVDAMREHVADLLARGGERTRVVLKYRHCDSKASLR
VTDDWKTVKYTTNRQIDVSKITRLLGLAVQGKATDTAEGSLRPSASPTRA
RKGKGKQKAKKG
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mRNA from alignment at CM002460.1:437947..438285+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2994 ID=rna2994|Name=rna2994|organism=Nannochloropsis gaditana|type=mRNA|length=339bp|location=Sequence derived from alignment at CM002460.1:437947..438285+ (Nannochloropsis gaditana)
ATGACTGGCACGGGCAAAAAGGTCAATACGACCAAGGCAACCTCCGTGGA
TGCTATGCGAGAGCACGTGGCAGACTTGCTGGCGCGCGGCGGGGAGCGGA
CGCGAGTGGTGCTCAAGTACCGACACTGCGACTCCAAGGCCTCATTGCGG
GTGACGGACGACTGGAAAACCGTAAAATACACGACAAACAGACAGATTGA
TGTGAGTAAGATTACGCGGCTATTAGGACTGGCCGTCCAAGGGAAGGCTA
CAGACACAGCGGAGGGCTCCCTAAGGCCGAGCGCATCACCAACGCGTGCT
CGTAAAGGTAAGGGGAAacagaaggcgaagaagggatAA
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Coding sequence (CDS) from alignment at CM002460.1:437947..438285+

>rna2994 ID=rna2994|Name=rna2994|organism=Nannochloropsis gaditana|type=CDS|length=339bp|location=Sequence derived from alignment at CM002460.1:437947..438285+ (Nannochloropsis gaditana)
ATGACTGGCACGGGCAAAAAGGTCAATACGACCAAGGCAACCTCCGTGGA
TGCTATGCGAGAGCACGTGGCAGACTTGCTGGCGCGCGGCGGGGAGCGGA
CGCGAGTGGTGCTCAAGTACCGACACTGCGACTCCAAGGCCTCATTGCGG
GTGACGGACGACTGGAAAACCGTAAAATACACGACAAACAGACAGATTGA
TGTGAGTAAGATTACGCGGCTATTAGGACTGGCCGTCCAAGGGAAGGCTA
CAGACACAGCGGAGGGCTCCCTAAGGCCGAGCGCATCACCAACGCGTGCT
CGTAAAGGTAAGGGGAAacagaaggcgaagaagggatAA
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Synonyms
Publications