EWM27688.1, cds2986 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27688.1 vs. NCBI_GenBank
Match: gi|585109960|gb|EWM27688.1| (signal recognition particle 9 kda protein [Nannochloropsis gaditana]) HSP 1 Score: 223.787 bits (569), Expect = 5.950e-74 Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0
Query: 1 MTGTGKKVNTTKATSVDAMREHVADLLARGGERTRVVLKYRHCDSKASLRVTDDWKTVKYTTNRQIDVSKITRLLGLAVQGKATDTAEGSLRPSASPTRARKGKGKQKAKKG 112
MTGTGKKVNTTKATSVDAMREHVADLLARGGERTRVVLKYRHCDSKASLRVTDDWKTVKYTTNRQIDVSKITRLLGLAVQGKATDTAEGSLRPSASPTRARKGKGKQKAKKG
Sbjct: 1 MTGTGKKVNTTKATSVDAMREHVADLLARGGERTRVVLKYRHCDSKASLRVTDDWKTVKYTTNRQIDVSKITRLLGLAVQGKATDTAEGSLRPSASPTRARKGKGKQKAKKG 112
BLAST of EWM27688.1 vs. NCBI_GenBank
Match: gi|661892544|emb|CDP03702.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 62.3882 bits (150), Expect = 2.186e-10 Identity = 35/99 (35.35%), Postives = 53/99 (53.54%), Query Frame = 0
Query: 14 TSVDAMREHVADLLARGGERTRVVLKYRHCDSKASLRVTDDWKTVKYTTNRQIDVSKITRL----LGLAVQGKATDTAEGSLRPSASPTRARKGKGKQK 108
TS D E L E+TR V+KYRHCD K L+VTDD + +K+ T++ D K+ +L L +G D +E S + A+KG+G+++
Sbjct: 5 TSWDDFVERSVQLFRADPEKTRYVMKYRHCDGKLVLKVTDDKECIKFKTDQAQDAKKMEKLNNIFFTLMARGPEADISEVSGKEHMEAQPAKKGRGRKQ 103
BLAST of EWM27688.1 vs. NCBI_GenBank
Match: gi|901822097|gb|KMZ73882.1| (Signal recognition particle 9 kDa protein [Zostera marina]) HSP 1 Score: 61.6178 bits (148), Expect = 3.556e-10 Identity = 33/99 (33.33%), Postives = 53/99 (53.54%), Query Frame = 0
Query: 14 TSVDAMREHVADLLARGGERTRVVLKYRHCDSKASLRVTDDWKTVKYTTNRQIDVSKITRL----LGLAVQGKATDTAEGSLRPSASPTRARKGKGKQK 108
TS D E L E +R V+KYRHCD K L+VTD+ + +K+ T++ D K+ +L L +G D +E S++ +RKG+G+++
Sbjct: 5 TSWDEFAERSVQLFRANPESSRYVMKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFALMARGPEADLSEVSVKDQVEQQPSRKGRGRRQ 103
BLAST of EWM27688.1 vs. NCBI_GenBank
Match: gi|747071481|ref|XP_011082611.1| (signal recognition particle 9 kDa protein [Sesamum indicum]) HSP 1 Score: 60.8474 bits (146), Expect = 7.492e-10 Identity = 34/98 (34.69%), Postives = 52/98 (53.06%), Query Frame = 0
Query: 15 SVDAMREHVADLLARGGERTRVVLKYRHCDSKASLRVTDDWKTVKYTTNRQIDVSKITRL----LGLAVQGKATDTAEGSLRPSASPTRARKGKGKQK 108
S D E L E+TR V+KYRHCD K L+VTDD + +K+ T++ D K+ +L L +G D +E + A A+KG+G+++
Sbjct: 6 SWDDFVEKSVQLFRADPEKTRYVMKYRHCDGKLVLKVTDDKECIKFKTDQAQDAKKMEKLNNVFFTLMARGPEADISEVGGKEQAEAQPAKKGRGRKQ 103
BLAST of EWM27688.1 vs. NCBI_GenBank
Match: gi|1179517193|ref|XP_020680354.1| (signal recognition particle 9 kDa protein [Dendrobium catenatum]) HSP 1 Score: 60.4622 bits (145), Expect = 1.272e-9 Identity = 35/98 (35.71%), Postives = 53/98 (54.08%), Query Frame = 0
Query: 15 SVDAMREHVADLLARGGERTRVVLKYRHCDSKASLRVTDDWKTVKYTTNRQIDVSKITRL----LGLAVQGKATDTAEGSLRPSASPTRARKGKGKQK 108
S D E + TR V+KYRHCD K L+VTD+ VK+ T++ DV K+ +L GL V+G D AE + + A ++KG+G+++
Sbjct: 6 SWDDFVERSVQIFRDDPHSTRYVMKYRHCDGKLVLKVTDNRVCVKFKTDQAQDVKKMEKLNNIFFGLMVRGPDVDIAEVTGKEPAEQQVSKKGRGRRQ 103
BLAST of EWM27688.1 vs. NCBI_GenBank
Match: gi|162459755|ref|NP_001105729.1| (signal recognition particle 9 kDa protein [Zea mays] >gi|12230624|sp|O04438.1|SRP09_MAIZE RecName: Full=Signal recognition particle 9 kDa protein; Short=SRP9 >gi|2208988|emb|CAA71203.1| signal recognition particle subunit 9 [Zea mays]) HSP 1 Score: 57.7658 bits (138), Expect = 1.173e-8 Identity = 36/100 (36.00%), Postives = 57/100 (57.00%), Query Frame = 0
Query: 16 VDAMREHV--ADLLARGGER-TRVVLKYRHCDSKASLRVTDDWKTVKYTTNRQIDVSKITRL----LGLAVQGKATDTAEGSLRPSASPTRARKGKGKQK 108
VD+ E V + L RG TR V+KYRHC+ K L+VTDD + +K+ T++ D K+ +L L +G D +E S + A +A+KG+G+++
Sbjct: 4 VDSWEEFVERSVQLFRGDPNATRYVMKYRHCEGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFALMTRGPDVDISEVSGKEQAEQQQAKKGRGRRQ 103
BLAST of EWM27688.1 vs. NCBI_GenBank
Match: gi|226491456|ref|NP_001152153.1| (signal recognition particle 9 kDa protein [Zea mays] >gi|195628782|gb|ACG36221.1| signal recognition particle 9 kDa protein [Zea mays] >gi|195653245|gb|ACG46090.1| signal recognition particle 9 kDa protein [Zea mays]) HSP 1 Score: 57.7658 bits (138), Expect = 1.198e-8 Identity = 33/98 (33.67%), Postives = 52/98 (53.06%), Query Frame = 0
Query: 15 SVDAMREHVADLLARGGERTRVVLKYRHCDSKASLRVTDDWKTVKYTTNRQIDVSKITRL----LGLAVQGKATDTAEGSLRPSASPTRARKGKGKQK 108
S D E L TR V+KYRHC+ K L+VTDD + +K+ T++ D K+ +L L +G D +E S + A +A+KG+G+++
Sbjct: 6 SWDEFVERSVQLFRGDPNATRYVMKYRHCEGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFALMTRGPDVDISEVSGKEQAEQQQAKKGRGRRQ 103
BLAST of EWM27688.1 vs. NCBI_GenBank
Match: gi|965676514|dbj|BAU03699.1| (hypothetical protein VIGAN_UM160300 [Vigna angularis var. angularis]) HSP 1 Score: 56.6102 bits (135), Expect = 2.255e-8 Identity = 29/81 (35.80%), Postives = 48/81 (59.26%), Query Frame = 0
Query: 32 ERTRVVLKYRHCDSKASLRVTDDWKTVKYTTNRQIDVSKITRL----LGLAVQGKATDTAEGSLRPSASPTRARKGKGKQK 108
ERTR V+KYRHCD K LRVTD+ + +KY T++ + K+ +L L +G D +E + + ++KG+G+++
Sbjct: 9 ERTRYVMKYRHCDGKLVLRVTDNRQCLKYKTDQAQEAKKMEKLNNMFFALMARGPDVDLSEVTGKEQMDAQPSKKGRGRKQ 89
BLAST of EWM27688.1 vs. NCBI_GenBank
Match: gi|1040854362|ref|XP_017238399.1| (PREDICTED: signal recognition particle 9 kDa protein [Daucus carota subsp. sativus] >gi|1021045983|gb|KZN03764.1| hypothetical protein DCAR_012520 [Daucus carota subsp. sativus]) HSP 1 Score: 56.9954 bits (136), Expect = 2.776e-8 Identity = 33/99 (33.33%), Postives = 53/99 (53.54%), Query Frame = 0
Query: 14 TSVDAMREHVADLLARGGERTRVVLKYRHCDSKASLRVTDDWKTVKYTTNRQIDVSKITRL----LGLAVQGKATDTAEGSLRPSASPTRARKGKGKQK 108
TS D E L ++TR V+KYR+CD K L+VTDD + +K+ T++ D K+ +L L +G D E + + A A+KG+G+++
Sbjct: 5 TSWDDFVERSVQLFRAHPDKTRYVMKYRNCDGKLVLKVTDDKECLKFKTDQAQDAKKMEKLNNIFFTLMARGPEVDFNEVAGKEQAEAQPAKKGRGRKQ 103
BLAST of EWM27688.1 vs. NCBI_GenBank
Match: gi|242095386|ref|XP_002438183.1| (signal recognition particle 9 kDa protein [Sorghum bicolor] >gi|241916406|gb|EER89550.1| hypothetical protein SORBI_3010G106200 [Sorghum bicolor]) HSP 1 Score: 56.9954 bits (136), Expect = 2.836e-8 Identity = 32/98 (32.65%), Postives = 52/98 (53.06%), Query Frame = 0
Query: 15 SVDAMREHVADLLARGGERTRVVLKYRHCDSKASLRVTDDWKTVKYTTNRQIDVSKITRL----LGLAVQGKATDTAEGSLRPSASPTRARKGKGKQK 108
S D E L TR V+KYRHC+ K L+VTDD + +K+ T++ D K+ +L L +G D +E S + A +++KG+G+++
Sbjct: 6 SWDEFVERSVQLFRADPNATRYVMKYRHCEGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFALMTRGPDADISEVSGKEQAEQQQSKKGRGRRQ 103 The following BLAST results are available for this feature:
BLAST of EWM27688.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|