EWM27688.1, cds2986 (CDS) Nannochloropsis gaditana

Overview
NameEWM27688.1
Unique Namecds2986
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:437947..438285 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27688.1
Productsignal recognition particle 9 kda protein
Orig transcript idgnl|cribi|Naga_100104g16.5951.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:437947..438285 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006810transport
GO:0045900negative regulation of translational elongation
GO:0006614SRP-dependent cotranslational protein targeting to membrane
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0048500signal recognition particle
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:00083127S RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR008832Signal_recog_particle_SRP9
IPR009018Signal_recog_particle_SRP9/14
Homology
BLAST of EWM27688.1 vs. NCBI_GenBank
Match: gi|585109960|gb|EWM27688.1| (signal recognition particle 9 kda protein [Nannochloropsis gaditana])

HSP 1 Score: 223.787 bits (569), Expect = 5.950e-74
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0
Query:    1 MTGTGKKVNTTKATSVDAMREHVADLLARGGERTRVVLKYRHCDSKASLRVTDDWKTVKYTTNRQIDVSKITRLLGLAVQGKATDTAEGSLRPSASPTRARKGKGKQKAKKG 112
            MTGTGKKVNTTKATSVDAMREHVADLLARGGERTRVVLKYRHCDSKASLRVTDDWKTVKYTTNRQIDVSKITRLLGLAVQGKATDTAEGSLRPSASPTRARKGKGKQKAKKG
Sbjct:    1 MTGTGKKVNTTKATSVDAMREHVADLLARGGERTRVVLKYRHCDSKASLRVTDDWKTVKYTTNRQIDVSKITRLLGLAVQGKATDTAEGSLRPSASPTRARKGKGKQKAKKG 112          
BLAST of EWM27688.1 vs. NCBI_GenBank
Match: gi|661892544|emb|CDP03702.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 62.3882 bits (150), Expect = 2.186e-10
Identity = 35/99 (35.35%), Postives = 53/99 (53.54%), Query Frame = 0
Query:   14 TSVDAMREHVADLLARGGERTRVVLKYRHCDSKASLRVTDDWKTVKYTTNRQIDVSKITRL----LGLAVQGKATDTAEGSLRPSASPTRARKGKGKQK 108
            TS D   E    L     E+TR V+KYRHCD K  L+VTDD + +K+ T++  D  K+ +L      L  +G   D +E S +       A+KG+G+++
Sbjct:    5 TSWDDFVERSVQLFRADPEKTRYVMKYRHCDGKLVLKVTDDKECIKFKTDQAQDAKKMEKLNNIFFTLMARGPEADISEVSGKEHMEAQPAKKGRGRKQ 103          
BLAST of EWM27688.1 vs. NCBI_GenBank
Match: gi|901822097|gb|KMZ73882.1| (Signal recognition particle 9 kDa protein [Zostera marina])

HSP 1 Score: 61.6178 bits (148), Expect = 3.556e-10
Identity = 33/99 (33.33%), Postives = 53/99 (53.54%), Query Frame = 0
Query:   14 TSVDAMREHVADLLARGGERTRVVLKYRHCDSKASLRVTDDWKTVKYTTNRQIDVSKITRL----LGLAVQGKATDTAEGSLRPSASPTRARKGKGKQK 108
            TS D   E    L     E +R V+KYRHCD K  L+VTD+ + +K+ T++  D  K+ +L      L  +G   D +E S++       +RKG+G+++
Sbjct:    5 TSWDEFAERSVQLFRANPESSRYVMKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFALMARGPEADLSEVSVKDQVEQQPSRKGRGRRQ 103          
BLAST of EWM27688.1 vs. NCBI_GenBank
Match: gi|747071481|ref|XP_011082611.1| (signal recognition particle 9 kDa protein [Sesamum indicum])

HSP 1 Score: 60.8474 bits (146), Expect = 7.492e-10
Identity = 34/98 (34.69%), Postives = 52/98 (53.06%), Query Frame = 0
Query:   15 SVDAMREHVADLLARGGERTRVVLKYRHCDSKASLRVTDDWKTVKYTTNRQIDVSKITRL----LGLAVQGKATDTAEGSLRPSASPTRARKGKGKQK 108
            S D   E    L     E+TR V+KYRHCD K  L+VTDD + +K+ T++  D  K+ +L      L  +G   D +E   +  A    A+KG+G+++
Sbjct:    6 SWDDFVEKSVQLFRADPEKTRYVMKYRHCDGKLVLKVTDDKECIKFKTDQAQDAKKMEKLNNVFFTLMARGPEADISEVGGKEQAEAQPAKKGRGRKQ 103          
BLAST of EWM27688.1 vs. NCBI_GenBank
Match: gi|1179517193|ref|XP_020680354.1| (signal recognition particle 9 kDa protein [Dendrobium catenatum])

HSP 1 Score: 60.4622 bits (145), Expect = 1.272e-9
Identity = 35/98 (35.71%), Postives = 53/98 (54.08%), Query Frame = 0
Query:   15 SVDAMREHVADLLARGGERTRVVLKYRHCDSKASLRVTDDWKTVKYTTNRQIDVSKITRL----LGLAVQGKATDTAEGSLRPSASPTRARKGKGKQK 108
            S D   E    +       TR V+KYRHCD K  L+VTD+   VK+ T++  DV K+ +L     GL V+G   D AE + +  A    ++KG+G+++
Sbjct:    6 SWDDFVERSVQIFRDDPHSTRYVMKYRHCDGKLVLKVTDNRVCVKFKTDQAQDVKKMEKLNNIFFGLMVRGPDVDIAEVTGKEPAEQQVSKKGRGRRQ 103          
BLAST of EWM27688.1 vs. NCBI_GenBank
Match: gi|162459755|ref|NP_001105729.1| (signal recognition particle 9 kDa protein [Zea mays] >gi|12230624|sp|O04438.1|SRP09_MAIZE RecName: Full=Signal recognition particle 9 kDa protein; Short=SRP9 >gi|2208988|emb|CAA71203.1| signal recognition particle subunit 9 [Zea mays])

HSP 1 Score: 57.7658 bits (138), Expect = 1.173e-8
Identity = 36/100 (36.00%), Postives = 57/100 (57.00%), Query Frame = 0
Query:   16 VDAMREHV--ADLLARGGER-TRVVLKYRHCDSKASLRVTDDWKTVKYTTNRQIDVSKITRL----LGLAVQGKATDTAEGSLRPSASPTRARKGKGKQK 108
            VD+  E V  +  L RG    TR V+KYRHC+ K  L+VTDD + +K+ T++  D  K+ +L      L  +G   D +E S +  A   +A+KG+G+++
Sbjct:    4 VDSWEEFVERSVQLFRGDPNATRYVMKYRHCEGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFALMTRGPDVDISEVSGKEQAEQQQAKKGRGRRQ 103          
BLAST of EWM27688.1 vs. NCBI_GenBank
Match: gi|226491456|ref|NP_001152153.1| (signal recognition particle 9 kDa protein [Zea mays] >gi|195628782|gb|ACG36221.1| signal recognition particle 9 kDa protein [Zea mays] >gi|195653245|gb|ACG46090.1| signal recognition particle 9 kDa protein [Zea mays])

HSP 1 Score: 57.7658 bits (138), Expect = 1.198e-8
Identity = 33/98 (33.67%), Postives = 52/98 (53.06%), Query Frame = 0
Query:   15 SVDAMREHVADLLARGGERTRVVLKYRHCDSKASLRVTDDWKTVKYTTNRQIDVSKITRL----LGLAVQGKATDTAEGSLRPSASPTRARKGKGKQK 108
            S D   E    L       TR V+KYRHC+ K  L+VTDD + +K+ T++  D  K+ +L      L  +G   D +E S +  A   +A+KG+G+++
Sbjct:    6 SWDEFVERSVQLFRGDPNATRYVMKYRHCEGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFALMTRGPDVDISEVSGKEQAEQQQAKKGRGRRQ 103          
BLAST of EWM27688.1 vs. NCBI_GenBank
Match: gi|965676514|dbj|BAU03699.1| (hypothetical protein VIGAN_UM160300 [Vigna angularis var. angularis])

HSP 1 Score: 56.6102 bits (135), Expect = 2.255e-8
Identity = 29/81 (35.80%), Postives = 48/81 (59.26%), Query Frame = 0
Query:   32 ERTRVVLKYRHCDSKASLRVTDDWKTVKYTTNRQIDVSKITRL----LGLAVQGKATDTAEGSLRPSASPTRARKGKGKQK 108
            ERTR V+KYRHCD K  LRVTD+ + +KY T++  +  K+ +L      L  +G   D +E + +       ++KG+G+++
Sbjct:    9 ERTRYVMKYRHCDGKLVLRVTDNRQCLKYKTDQAQEAKKMEKLNNMFFALMARGPDVDLSEVTGKEQMDAQPSKKGRGRKQ 89          
BLAST of EWM27688.1 vs. NCBI_GenBank
Match: gi|1040854362|ref|XP_017238399.1| (PREDICTED: signal recognition particle 9 kDa protein [Daucus carota subsp. sativus] >gi|1021045983|gb|KZN03764.1| hypothetical protein DCAR_012520 [Daucus carota subsp. sativus])

HSP 1 Score: 56.9954 bits (136), Expect = 2.776e-8
Identity = 33/99 (33.33%), Postives = 53/99 (53.54%), Query Frame = 0
Query:   14 TSVDAMREHVADLLARGGERTRVVLKYRHCDSKASLRVTDDWKTVKYTTNRQIDVSKITRL----LGLAVQGKATDTAEGSLRPSASPTRARKGKGKQK 108
            TS D   E    L     ++TR V+KYR+CD K  L+VTDD + +K+ T++  D  K+ +L      L  +G   D  E + +  A    A+KG+G+++
Sbjct:    5 TSWDDFVERSVQLFRAHPDKTRYVMKYRNCDGKLVLKVTDDKECLKFKTDQAQDAKKMEKLNNIFFTLMARGPEVDFNEVAGKEQAEAQPAKKGRGRKQ 103          
BLAST of EWM27688.1 vs. NCBI_GenBank
Match: gi|242095386|ref|XP_002438183.1| (signal recognition particle 9 kDa protein [Sorghum bicolor] >gi|241916406|gb|EER89550.1| hypothetical protein SORBI_3010G106200 [Sorghum bicolor])

HSP 1 Score: 56.9954 bits (136), Expect = 2.836e-8
Identity = 32/98 (32.65%), Postives = 52/98 (53.06%), Query Frame = 0
Query:   15 SVDAMREHVADLLARGGERTRVVLKYRHCDSKASLRVTDDWKTVKYTTNRQIDVSKITRL----LGLAVQGKATDTAEGSLRPSASPTRARKGKGKQK 108
            S D   E    L       TR V+KYRHC+ K  L+VTDD + +K+ T++  D  K+ +L      L  +G   D +E S +  A   +++KG+G+++
Sbjct:    6 SWDEFVERSVQLFRADPNATRYVMKYRHCEGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFALMTRGPDADISEVSGKEQAEQQQSKKGRGRRQ 103          
The following BLAST results are available for this feature:
BLAST of EWM27688.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109960|gb|EWM27688.1|5.950e-74100.00signal recognition particle 9 kda protein [Nannoch... [more]
gi|661892544|emb|CDP03702.1|2.186e-1035.35unnamed protein product [Coffea canephora][more]
gi|901822097|gb|KMZ73882.1|3.556e-1033.33Signal recognition particle 9 kDa protein [Zostera... [more]
gi|747071481|ref|XP_011082611.1|7.492e-1034.69signal recognition particle 9 kDa protein [Sesamum... [more]
gi|1179517193|ref|XP_020680354.1|1.272e-935.71signal recognition particle 9 kDa protein [Dendrob... [more]
gi|162459755|ref|NP_001105729.1|1.173e-836.00signal recognition particle 9 kDa protein [Zea may... [more]
gi|226491456|ref|NP_001152153.1|1.198e-833.67signal recognition particle 9 kDa protein [Zea may... [more]
gi|965676514|dbj|BAU03699.1|2.255e-835.80hypothetical protein VIGAN_UM160300 [Vigna angular... [more]
gi|1040854362|ref|XP_017238399.1|2.776e-833.33PREDICTED: signal recognition particle 9 kDa prote... [more]
gi|242095386|ref|XP_002438183.1|2.836e-832.65signal recognition particle 9 kDa protein [Sorghum... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2994rna2994Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications