rna2993, rna2993 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2993
Unique Name	rna2993
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3257
Alignment location	CM002460.1:436111..437793 -

Link to JBrowse

Properties


Property Name	Value
Product	mitochondrial inner membrane protein oxa1l
Orig transcript id	gnl\|cribi\|Naga_100104g15.5959.mrna
Orig protein id	gnl\|cribi\|Naga_100104g15.5959
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:436111..437793 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100104g15	gene2872	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27696.1	cds2985	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2993	rna2993-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:436111..437793-
coding sequence from alignment at CM002460.1:436111..437793-

mRNA sequence

>rna2993 ID=rna2993|Name=rna2993|organism=Nannochloropsis gaditana|type=mRNA|length=3257bp
GCTACAGGCACTATGCTGCCTCAGTTGCCACCACCAGCGCTCGACGAAGA
GCCACTACTGCGGCGACCTTTGTTGCTTCTCGATACATCAAATGAAGATG
AAGCTCCGAAGGGAAGAAGCACAACCGAAAGTGAAAAACACACATTACGA
CGGCACCGACATGGCGTACACTACAGTAGCTCCTCTCGATCTATTTTTAT
TCGTTTGTCAAGCGACCGCCTCGTCAAAGTGACGCAGCAAAACGAGAATG
ACGAGTGGGACAGCGACAGTGACGAGCAAAAAGAAAGACGTTTGCAGGCC
CGTGTACTGCAATTTGGGGCCTGTGGTCTACGCGTATGCGGGCATAATGT
ATGTTGGGGTGGAATAAGTGCAGCGCTCAAAATTGTCTGGGCGTATTACT
TTTTCAACTGGGCCATCATATTTCTGGCATTAGCTGTTTGCACTTTAATA
AGTATCGTGTATGAGGCCCTTGAGACGGGAGATTCACTCGGACAAGCTGC
AATCGTGGTTGGACTGTCGCCAGTGATCTCACTGTTGTGGCTTTTCTTCA
GTTTCGTCTATAATGTCCTCTTTTGGGGCGTTTGGGAGGATTTTTTTGAC
ATGGAGGCGTCGCTGGCGGCCTTGAGGGGGAACTTGCAAAGTACCTTTTC
TAAAAACTGCTTGACGACAACGGTGACATTCTGCATCAATGTTCCGGTGC
TCTTCAGTCTTGTTGTCTTCGGCATGCAGTTGAAGAAAACCGCGAGCGGT
TGGCTTTGGCGGACCCAGTTCTTCTTGTCCTTCGCCTCCAACGTGCTTCT
AGCCTTCCTTTTTTTCGCGGGCGCCCTGATCGGTCAGGACCACTCCATCC
TTAAGCCTTGCCCCCGAAAAGCCCCGACTGGTGGGGAAAAGCGTAATGGA
TTTCCGCACTCTTCGGGCATTATCTGGGGTTGCATAGGGTGGTGTCGTCG
GGCAGGCAGGGTGGTGGCCCATGGCTTGCTCCACACGGAGGCCAGCCGAG
CCGTACGCATCTACGTGCGCTCGACCATTGACGGTGGTGGTGCGCTTAGC
AACAAGGTTTCAACGTGGGGCCGGTATGCCGCGCAGTCCTTCTTGCCGGA
GCCGGTCGATTTGGAGGGAGGGAGTTCAGACCCCTATCAGGAGAAATGGA
GGGAAGAGGCCTTGGAGCCTTCAAGCGCAGAGGAACCTAAAAACAGCGAG
AATAAGGTCGAAGATGAGGAGGACATAGAAGAGCGGCGATCATATCAGCG
ACGACGCCGGCTCTTGTCGGGTCACGGGGTGAAGCCTTGGCCCACCCCGT
GGCACCTCGGCTGGTACTGCGTTCAGTGGTGCGGCGGAGGGAGGTCCGGG
GCCCGCTTGGATGAGCGACGCTGCTTCCCAACGATCGTCAGCTTACCGTG
GACCCTTCTCCTCCTTTCCGCCCTGATTCTTCTCGCATACACGGCGGTCT
CAGTGCGGGCCTACGTCCTTTTCGCTTTCATTATCTCCTATTTCATGGCG
GTGCCCCTCCTGCACGCTGTTCTTGCACGCCTCATCGCTTTGTATTGCAG
CCCAGTGGGACTTCTGGCTTTGGACGTGGCGCTTACACTTTGTTTGGTCA
CAGGATTCCTGCTCTGTCTCTCGCTGGCCTCGTATTACTTGGGAGCGGCC
GTGATTGTGGTCATCCTCCTTTCCAACTGCCTTGTCTTACTGGCCCATAT
CCCCGCCATTCGCGACCGGAAGCTTCCTCCGCCCCGTACGCACGAAGAAG
GCCTCGCGTTCCACACGAAGGCGCGGACGCACGCCATCGTCACGACCGCT
CGCAAGTGGACCTTCGCCTCGATCATATTCCTTCTCCTGCTGGTCTTGAC
CTTGCGGACGGTGCCGGAGAACTACCAAGCTGCCCACGCAGCCTACCGCG
CGGCACGAGGCTCTTGGAAACGACCTCCATCGCCTGCTAATCACCGTAGC
AACGACACCGCTCCACGCTCGGATGTTGTGCAAGCTCCGCAGCCGTACGC
GTTCTGTGAGCAGACCTTCTCTCGGGACCGCCTCAGCGTCTTGGATTTGG
CGCACGTCTCGAACGCCGCCTACATGGAGCAAGCGGAACTACAAAGCTAC
TTGGCCGAGCACGTGCCACGGCACCATTTTTCAAACGTTTCGCTCGTGGA
CCTGGGGCAGTACGGCCCCGTCACCTACATGTTCGACTTGCCGCACAGTC
GGGTTTTAGTCTGGGGAATTCGAGGGACGAACGCGCTCTTCGATCTCTTT
CAAGATCTGGACGCATACTCGGAGGCGATCCTCATCCAGCTTTGTACGTC
TCTCTTCCCCTTGTATGCCAGCCCAATGTTCCAACCCCTCTTGAACAAGT
TCGTGGGCACGCCCTCGCACTTGGTTGAAACCCTGGCCACGCTGAAAGGC
GTCCTCCTGAACCACCACCTGGGCGGTCAACGCTTCTCGGACAGTCGGAG
TACCGGGTCTTCTCACGGGACTGAGGCGGTTGGAAACGCTGTGAGGTACT
ACTACGATGCACTCAGTAACTACATCACGAGCACCATTCTCTCGAATCCC
TACTACCAGGGTTACGAACTCCTCTTCACCGGCCACAGCCTCGGGGGTGG
GGTAGCACAAATTGTCGCTGCACGCTTGGAGGGTGTGGCCGTTGTTTTCT
CCGCGCCCGGCGTGGTCCTTTCCCGGAAAAAGTTTAAGATTTCACTCGAT
AATATTGACGCGTACGCGATCAATGTCTGGGCTGTCGGAGATTTGGTGCC
CCTGATCGACGAACAGAGTGTGAAGTCCCAACAGGTGCGGTGTTCCCACG
AGCGCTTCAGCTACCACTGTCATTCAATTTTGCACACCATCGACGAGATA
GAAGGCAGCTGTAAGGATGAGGAAGGGCCATGAGCGACGCGGAGCCATCG
AGGGGAGTGGGGCGGAGCTCACCGGCAAGAGGCCTAAGGAGCCGCGGGCG
AATTACCCCATTCTATTCTAGAAGCTTGCTGATGTATGGATAAGTGAGCG
CGCATGCATGTGTTATGTCTTTATTTGCGCGTATGCAATCCCTGTACATG
TGCCATAATGTGTGATTGTGCACACAGCGGGCGTCCGCCCAACAAAGATG
ATTTTCAAAGTAAACAACAGCCGTCGCCATCCGCCAAGTCTCCCCTCCTC
GCCTCTTTGCACGTGTCTTCTTTTTTGGTCGCCCTTTATTTGCCCTTCCT
ACGTTGGGGTCTTCGTGAGCTGCTTCATACACTCCTTGTGCTGGCCGCGC
CCCCCCC

protein sequence of rna2993

>rna2993-protein ID=rna2993-protein|Name=rna2993|organism=Nannochloropsis gaditana|type=polypeptide|length=423bp
MTTPLRLCRNLARRTMSWRYNAGEICLRGASLRAGAGAYSGRGLGPILPK
SLDSARRGFSASPSPPPTGTPSDLAPVSQIPQIDPTTWHAWVFDSIPVRS
MQTLLEVTHEATGLPWWASIVLSTLAFRLALLPVVRYQAHALARLARAAP
LVLALNRALSKRLDGVRAGDWAGTTAVCQDYAAGVRAALKLHQVSLLAAI
ASPIVQLPVFVTFALANRRMIDQQVPGLEEGGVAWFEDLTEADPLLILPV
LCLGSTYLNLELGFARLHESQIILRFLKDNLQLFLILGAPVSSTLPAGVF
IYWFTSSVYGHAQHFALRNPDVRLLLGFPTVPKERLQSGGAAKEGPASGH
TVSTPAGSEADAGVFVEKRIFLKALQALDAYESRRKARLKQTKSDGEELK
KQEGSRKEKSPELSIRPVSKSRN

mRNA from alignment at CM002460.1:436111..437793-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2993 ID=rna2993|Name=rna2993|organism=Nannochloropsis gaditana|type=mRNA|length=1683bp|location=Sequence derived from alignment at CM002460.1:436111..437793- (Nannochloropsis gaditana)
CCGGTGCAACAATCGGCCTAGACATCTTCAACTCTTTTTTTTGTCACTCG
CTCCCCACCAGTGTTTCTTACTCTCCCTTTTCCACCCTACTTGTCGCCTC
CTCTGCCTTCAGCCCTCCTTCCTCTCGCCCAAACCTCGCCGCCCCCACCG
CTTCTCTTTCGGTCACGCACTGCGAACTTATTGCGCTAATCTTACCTCTC
GTGATCAACTGTACAGAGCAAATAGCTATCGTCGAAAATTCATCAAAGCA
GTGAGGAGAGAGCAGCGGTGAACATGGCACAAGGAAGGGGAGGCTAAACG
CGCCCGACACGGGATACGACCCCATCTCGGTGGGAGGGAGGATGACTACG
CCACTGCGCCTGTGCAGAAATCTGGCCAGGAGGACTATGTCATGGCGGTA
CAACGCCGGTGAGATTTGTCTGCGAGGTGCATCACTGCGTGCTGGAGCTG
GTGCGTACTCTGGCCGCGGGCTGGGCCCTATCCTCCCCAAGTCACTCGAC
TCGGCGCGAAGAGGGTTTAGCGCCTCCCCCTCGCCGCCGCCCACGGGCAC
ACCGTCCGACCTCGCGCCGGTGTCCCAAATCCCACAAATAGATCCCACGA
CGTGGCATGCCTGGGTATTCGACTCCATCCCAGTCCGATCCATGCAAACG
CTCCTGGAGGTGACGCACGAGGCCACGGGATTGCCGTGGTGGGCCTCCAT
CGTCCTCTCCACTCTGGCCTTCCGGCTGGCCCTGCTCCCTGTCGTCCGCT
ACCAAGCCCACGCCCTTGCTCGCCTGGCCCGGGCGGCGCCCCTCGTCCTC
GCTTTGAACAGAGCTCTCTCTAAGCGCCTCGACGGGGTCCGCGCGGGGGA
TTGGGCGGGCACCACAGCAGTGTGCCAAGACTACGCCGCCGGCGTGCGGG
CCGCGCTCAAGCTGCACCAAGTGAGTCTTCTCGCCGCCATCGCCTCTCCG
ATCGTCCAGCTACCTGTGTTCGTAACCTTTGCTCTTGCCAATAGGCGCAT
GATCGACCAGCAGGTCCCGGGCCTGGAGGAGGGGGGGGTTGCCTGGTTCG
AGGACTTGACCGAGGCGGACCCCCTTTTGATCTTGCCTGTGCTGTGCTTA
GGCTCAACTTACCTGAATCTGGAGCTCGGGTTCGCTCGTTTGCATGAGTC
TCAGATAATTCTACGGTTTTTGAAGGACAACTTGCAACTCTTCCTCATTC
TGGGGGCCCCGGTCTCGTCCACCCTGCCAGCTGGGGTCTTCATCTACTGG
TTCACTTCCAGTGTCTACGGGCATGCCCAACATTTCGCCTTGCGAAATCC
TGATGTCCGCCTTCTCTTAGGCTTTCCCACTGTACCCAAAGAGCGGCTTC
AGAGTGGAGGAGCTGCAAAGGAGGGCCCGGCTTCAGGGCACACGGTCTCT
ACTCCTGCAGGGTCCGAGGCTGATGCCGGTGTTTTCGTAGAAAAGCGGAT
CTTTCTGAAGGCTCTGCAAGCTTTGGATGCTTATGAATCTCGCCGTAAAG
CTCGTCTAAAGCAAACAAAAAGCGACGGCGAGGAGCTGAAGAAGCAAGAA
GGGAGTAGGAAGGAAAAGAGTCCGGAGCTTTCGATCCGTCCTGTCTCGAA
ATCGAGAAATTGAGCTCAAGGAGGACGCAGCTCTTAGGAAGGAAAGGCGA
CGAGGAAAAGAAAAACTGGATCTCTGTAAAGCA

Coding sequence (CDS) from alignment at CM002460.1:436111..437793-

>rna2993 ID=rna2993|Name=rna2993|organism=Nannochloropsis gaditana|type=CDS|length=1272bp|location=Sequence derived from alignment at CM002460.1:436111..437793- (Nannochloropsis gaditana)
ATGACTACGCCACTGCGCCTGTGCAGAAATCTGGCCAGGAGGACTATGTC
ATGGCGGTACAACGCCGGTGAGATTTGTCTGCGAGGTGCATCACTGCGTG
CTGGAGCTGGTGCGTACTCTGGCCGCGGGCTGGGCCCTATCCTCCCCAAG
TCACTCGACTCGGCGCGAAGAGGGTTTAGCGCCTCCCCCTCGCCGCCGCC
CACGGGCACACCGTCCGACCTCGCGCCGGTGTCCCAAATCCCACAAATAG
ATCCCACGACGTGGCATGCCTGGGTATTCGACTCCATCCCAGTCCGATCC
ATGCAAACGCTCCTGGAGGTGACGCACGAGGCCACGGGATTGCCGTGGTG
GGCCTCCATCGTCCTCTCCACTCTGGCCTTCCGGCTGGCCCTGCTCCCTG
TCGTCCGCTACCAAGCCCACGCCCTTGCTCGCCTGGCCCGGGCGGCGCCC
CTCGTCCTCGCTTTGAACAGAGCTCTCTCTAAGCGCCTCGACGGGGTCCG
CGCGGGGGATTGGGCGGGCACCACAGCAGTGTGCCAAGACTACGCCGCCG
GCGTGCGGGCCGCGCTCAAGCTGCACCAAGTGAGTCTTCTCGCCGCCATC
GCCTCTCCGATCGTCCAGCTACCTGTGTTCGTAACCTTTGCTCTTGCCAA
TAGGCGCATGATCGACCAGCAGGTCCCGGGCCTGGAGGAGGGGGGGGTTG
CCTGGTTCGAGGACTTGACCGAGGCGGACCCCCTTTTGATCTTGCCTGTG
CTGTGCTTAGGCTCAACTTACCTGAATCTGGAGCTCGGGTTCGCTCGTTT
GCATGAGTCTCAGATAATTCTACGGTTTTTGAAGGACAACTTGCAACTCT
TCCTCATTCTGGGGGCCCCGGTCTCGTCCACCCTGCCAGCTGGGGTCTTC
ATCTACTGGTTCACTTCCAGTGTCTACGGGCATGCCCAACATTTCGCCTT
GCGAAATCCTGATGTCCGCCTTCTCTTAGGCTTTCCCACTGTACCCAAAG
AGCGGCTTCAGAGTGGAGGAGCTGCAAAGGAGGGCCCGGCTTCAGGGCAC
ACGGTCTCTACTCCTGCAGGGTCCGAGGCTGATGCCGGTGTTTTCGTAGA
AAAGCGGATCTTTCTGAAGGCTCTGCAAGCTTTGGATGCTTATGAATCTC
GCCGTAAAGCTCGTCTAAAGCAAACAAAAAGCGACGGCGAGGAGCTGAAG
AAGCAAGAAGGGAGTAGGAAGGAAAAGAGTCCGGAGCTTTCGATCCGTCC
TGTCTCGAAATCGAGAAATTGA

Synonyms

Publications