EWM27696.1, cds2985 (CDS) Nannochloropsis gaditana

Overview
NameEWM27696.1
Unique Namecds2985
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:436181..437452 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27696.1
Productmitochondrial inner membrane protein oxa1l
Orig transcript idgnl|cribi|Naga_100104g15.5959.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:436181..437452 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003674molecular_function
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0051205protein insertion into membrane
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR001708Membrane_insert_OXA1/ALB3/YidC
Homology
BLAST of EWM27696.1 vs. NCBI_GenBank
Match: gi|585109968|gb|EWM27696.1| (mitochondrial inner membrane protein oxa1l [Nannochloropsis gaditana])

HSP 1 Score: 852.818 bits (2202), Expect = 0.000e+0
Identity = 423/423 (100.00%), Postives = 423/423 (100.00%), Query Frame = 0
Query:    1 MTTPLRLCRNLARRTMSWRYNAGEICLRGASLRAGAGAYSGRGLGPILPKSLDSARRGFSASPSPPPTGTPSDLAPVSQIPQIDPTTWHAWVFDSIPVRSMQTLLEVTHEATGLPWWASIVLSTLAFRLALLPVVRYQAHALARLARAAPLVLALNRALSKRLDGVRAGDWAGTTAVCQDYAAGVRAALKLHQVSLLAAIASPIVQLPVFVTFALANRRMIDQQVPGLEEGGVAWFEDLTEADPLLILPVLCLGSTYLNLELGFARLHESQIILRFLKDNLQLFLILGAPVSSTLPAGVFIYWFTSSVYGHAQHFALRNPDVRLLLGFPTVPKERLQSGGAAKEGPASGHTVSTPAGSEADAGVFVEKRIFLKALQALDAYESRRKARLKQTKSDGEELKKQEGSRKEKSPELSIRPVSKSRN 423
            MTTPLRLCRNLARRTMSWRYNAGEICLRGASLRAGAGAYSGRGLGPILPKSLDSARRGFSASPSPPPTGTPSDLAPVSQIPQIDPTTWHAWVFDSIPVRSMQTLLEVTHEATGLPWWASIVLSTLAFRLALLPVVRYQAHALARLARAAPLVLALNRALSKRLDGVRAGDWAGTTAVCQDYAAGVRAALKLHQVSLLAAIASPIVQLPVFVTFALANRRMIDQQVPGLEEGGVAWFEDLTEADPLLILPVLCLGSTYLNLELGFARLHESQIILRFLKDNLQLFLILGAPVSSTLPAGVFIYWFTSSVYGHAQHFALRNPDVRLLLGFPTVPKERLQSGGAAKEGPASGHTVSTPAGSEADAGVFVEKRIFLKALQALDAYESRRKARLKQTKSDGEELKKQEGSRKEKSPELSIRPVSKSRN
Sbjct:    1 MTTPLRLCRNLARRTMSWRYNAGEICLRGASLRAGAGAYSGRGLGPILPKSLDSARRGFSASPSPPPTGTPSDLAPVSQIPQIDPTTWHAWVFDSIPVRSMQTLLEVTHEATGLPWWASIVLSTLAFRLALLPVVRYQAHALARLARAAPLVLALNRALSKRLDGVRAGDWAGTTAVCQDYAAGVRAALKLHQVSLLAAIASPIVQLPVFVTFALANRRMIDQQVPGLEEGGVAWFEDLTEADPLLILPVLCLGSTYLNLELGFARLHESQIILRFLKDNLQLFLILGAPVSSTLPAGVFIYWFTSSVYGHAQHFALRNPDVRLLLGFPTVPKERLQSGGAAKEGPASGHTVSTPAGSEADAGVFVEKRIFLKALQALDAYESRRKARLKQTKSDGEELKKQEGSRKEKSPELSIRPVSKSRN 423          
BLAST of EWM27696.1 vs. NCBI_GenBank
Match: gi|553195489|ref|XP_005856156.1| (mitochondrial inner membrane oxa1l-like protein, partial [Nannochloropsis gaditana CCMP526] >gi|422292903|gb|EKU20204.1| mitochondrial inner membrane oxa1l-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 238.039 bits (606), Expect = 1.045e-74
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0
Query:  191 LHQVSLLAAIASPIVQLPVFVTFALANRRMIDQQVPGLEEGGVAWFEDLTEADPLLILPVLCLGSTYLNLELGFARLHESQIILRFLKDNLQLFLILGAPVSSTLPAGVFIYWFTSSV 308
            +HQVSLLAAIASPIVQLPVFVTFALANRRMIDQQVPGLEEGGVAWFEDLTEADPLLILPVLCLGSTYLNLELGFARLHESQIILRFLKDNLQLFLILGAPVSSTLPAGVFIYWFTSSV
Sbjct:    1 MHQVSLLAAIASPIVQLPVFVTFALANRRMIDQQVPGLEEGGVAWFEDLTEADPLLILPVLCLGSTYLNLELGFARLHESQIILRFLKDNLQLFLILGAPVSSTLPAGVFIYWFTSSV 118          
BLAST of EWM27696.1 vs. NCBI_GenBank
Match: gi|1173954017|gb|OQS01516.1| (Cytochrome Oxidase Biogenesis (Oxa1) Family [Achlya hypogyna])

HSP 1 Score: 146.362 bits (368), Expect = 5.311e-37
Identity = 93/276 (33.70%), Postives = 139/276 (50.36%), Query Frame = 0
Query:   58 GFSASPSPPPTGTPSDLAPVSQIPQIDPTTWHAWVFDSIPVRSMQTLLEVTHEATGLPWWASIVLSTLAFRLALLPVVRYQAHALARLARAAPLVLALNRALSKRLDGVRAGDWAGTTAVCQDYAAGVRAALKLHQVSLLAAIASPIVQLPVFVTFALANRRMIDQQVPGLEEGGVAWFEDLTEADPLLILPVLCLGSTYLNLELGFARLHESQI-ILRFLKDNLQLFLILGAPVSSTLPAGVFIYWFTSSVYGHAQHFALRNPDVRLLLGFPTVP 332
             FS +P   P G+  D+  +++I    P     W+     V + Q ++E  H  TGLPWWA+   S +  R +L P++ YQ  A+ R+A A+  V  + ++       +  G  +      +    G   + + H  S L  I++P+VQ+P F   A + R ++   VPGL+ GG   F +LTEADP  +LP L + STYLN EL    +  S+I +L +LK  LQ   ++  P    LP GVF YW  SS +  AQ   L+ P VR  LG   +P
Sbjct:   23 AFSTTPVNLPEGSGVDVQALTEIMGGGPAVEPLWI-----VHAAQNVIETVHATTGLPWWATFAASAVVVRGSLFPLLVYQIKAIERMAEASKDVKTVWKSYLYARLFLPPGLPSSQIDALKQLQKGASLSFEKHNTSPLQCISAPVVQIPSFFLMAYSCRGLVRSGVPGLDIGGFGPFLNLTEADPTFVLPALAVASTYLNFEL----MGSSKIKLLDWLKGKLQYIPLISFPFVCQLPQGVFFYWLASSWFSLAQSRLLKVPAVRARLGLKQLP 289          
BLAST of EWM27696.1 vs. NCBI_GenBank
Match: gi|1183482219|gb|ORZ06012.1| (60Kd inner membrane protein-domain-containing protein [Absidia repens])

HSP 1 Score: 142.51 bits (358), Expect = 1.888e-35
Identity = 81/247 (32.79%), Postives = 132/247 (53.44%), Query Frame = 0
Query:   97 PVRSMQTLLEVTHEATGLPWWASIVLSTLAFRLALLP-VVRYQAHALARLARAAPLVLALNRALSKRLDGVRAGDWAGTTAVCQDYAAGVRAALKLHQVSLLAAIASPIVQLPVFVTFALANRRMIDQQVPGLEEGGVAWFEDLTEADPLLILPVLCLGSTYLNLELGF---ARLHESQIILRFLKDNLQLFLILGAPVSSTLPAGVFIYWFTSSVYGHAQHFALRNPDVRLLLGFPTV--PKERLQ 337
            PV  ++ +LE  H   GLPWW SI L+T+  R ALLP +++ Q +  ARL       + +N  +++ ++ ++     G       Y+  +    K +    + ++  P++Q+PV ++F +A R M D  VPG+ EGG++WF +LT  DP  ILP +        LE G    A   +S+ +  F++       +L  P ++ +P+GVF+YW TS++Y  AQ  AL+NP VR  L  P +  P + LQ
Sbjct:   33 PVGGLEAMLEAVHVTMGLPWWGSIALATVIVRTALLPLIIKLQGNN-ARL-------MNINPEVTRIMNNLKTAQAEGDAVATGKYSHEISDLFKKNNCHPMKSLGLPLIQMPVMISFFMALRAMADLPVPGMAEGGMSWFTNLTAQDPYYILPAVSAAGMLAVLEAGTEAGAATPQSKGMKTFMRG----ITVLTVPFTAWMPSGVFVYWITSNIYSIAQILALKNPSVRSALNIPQLIKPAKELQ 267          
BLAST of EWM27696.1 vs. NCBI_GenBank
Match: gi|1173927265|gb|OQR81304.1| (Cytochrome Oxidase Biogenesis (Oxa1) Family, partial [Thraustotheca clavata])

HSP 1 Score: 139.043 bits (349), Expect = 1.294e-34
Identity = 88/238 (36.97%), Postives = 124/238 (52.10%), Query Frame = 0
Query:   98 VRSMQTLLEVTHEATGLPWWASIVLSTLAFRLALLPVVRYQAHALARLARAAP-LVLALNRALSKRLDGVRAGDWAGTTAVCQDYAAGVRAALKLHQVSLLAAIASPIVQLPVFVTFALANRRMIDQ-QVPGLEEGGVAWFEDLTEADPLLILPVLCLGSTYLNLELGFARLHESQI-ILRFLKDNLQLFLILGAPVSSTLPAGVFIYWFTSSVYGHAQHFALRNPDVRLLLGFPTVP 332
            V + Q ++E  H  TGLPWWA+   + +  R +L P++ YQ  +  R+A A+  L       L  RL  +  G  +      +    G +   + H    +  IA+P+VQ+P F   A + R MI    VPGL+ GG   F++L EAD   ILP+L +GSTYLN EL    +  S+I +  +LK+ +Q   IL  P    LP GVF YW  SS Y  AQ  AL+ P+VR  LG   +P
Sbjct:   10 VNAAQNVIEAVHTTTGLPWWATFACTAIVVRGSLFPLLVYQIKSTERMAVASKDLRKVWKTYLYARL-FLPPGLPSSQIDALKLLKDGAQLTWEKHNTHPVQCIATPLVQIPSFFLMAYSCRDMIRSGVVPGLDSGGFGMFQNLMEADSTFILPILAVGSTYLNFEL----MGSSKIKVFDWLKNKIQYIPILSFPFICQLPQGVFFYWLASSWYSLAQSRALKVPEVRKRLGLKEIP 242          
BLAST of EWM27696.1 vs. NCBI_GenBank
Match: gi|1021057451|emb|SAM06360.1| (hypothetical protein [Absidia glauca])

HSP 1 Score: 140.584 bits (353), Expect = 3.654e-34
Identity = 86/288 (29.86%), Postives = 143/288 (49.65%), Query Frame = 0
Query:   64 SPPPTGTPSDLAPVSQIPQIDPTTWHA---------WVFDSIPVRSMQTLLEVTHEATGLPWWASIVLSTLAFRLALLPVVRYQAHALARLARAAPLVLALNRALSKRLDGVRAGDWAGTTAVCQDYAAGVRAALKLHQVSLLAAIASPIVQLPVFVTFALANRRMIDQQVPGLEEGGVAWFEDLTEADPLLILPVLCLGSTYLNLELGF---ARLHESQIILRFLKDNLQLFLILGAPVSSTLPAGVFIYWFTSSVYGHAQHFALRNPDVRLLLGFPTV--PKERLQ 337
            SPP     S L  ++Q P  +     A          + +  PV  ++ +LE  H   GLPWWASI  +T+  R+ALLP++        +L R    ++ +N  +++ ++ ++     G       Y+  +    K ++   + ++  P+VQ+PV ++F +A R M +  VPG+ EGG++WF DL   DP  ILP +        LE G    A   +S+ +  F++       +L  P ++ +P+GVFIYW TS+ +  AQ  AL++P VR  L  P +  P + LQ
Sbjct:   60 SPPTINDTSSLETLAQTPAAESVIGAAAQIGDFKAMGLCNFTPVGGLEAMLEAVHVTMGLPWWASIAAATVIVRMALLPLI-------VKLQRNNARLMNINPEVTRIMNNLKTAQADGDAVATGKYSHEISDLFKKNKCHPMKSLGLPLVQMPVMISFFMALRAMAELPVPGMTEGGMSWFTDLAAKDPYYILPAVSAAGMLAVLEAGTEAGAATPQSKGMKNFMRG----VTVLTVPFTAWMPSGVFIYWITSNAFSIAQILALKSPSVRSALDIPQLVKPAKELQ 336          
BLAST of EWM27696.1 vs. NCBI_GenBank
Match: gi|1069859087|ref|XP_018226730.1| (hypothetical protein T552_00950 [Pneumocystis carinii B80] >gi|968585063|gb|KTW29743.1| hypothetical protein T552_00950 [Pneumocystis carinii B80])

HSP 1 Score: 141.739 bits (356), Expect = 4.678e-34
Identity = 101/324 (31.17%), Postives = 152/324 (46.91%), Query Frame = 0
Query:   97 PVRSMQTLLEVTHEATGLPWWASIVLSTLAFRLALLPVVRYQAHALARLARAAPLVLALNRALSKRLDGVRAGDWAGTTAVCQDYAAGVRAALKLHQVSLLAAIASPIVQLPVFVTFALANRRMIDQQVPGLEEGGVAWFEDLTEADPLLILPVLCLGSTYLNLELGFARLHESQIILRFLKDNLQLFLILGAPVSST-LPAGVFIYWFTSSVYGHAQHFALRNPDVRLLLGFPTVPKERLQSGGAAKEGPASGHTVSTPAGSEADAGVF-----VEKRIFLKALQA---------LDAYESRRKARLKQTKSDGEELKKQEGS 405
            PV  +Q  LE  +  TGLPWWASI   T+  R  ++P++      L+ LA   P V    +AL    +    GD    T   Q     ++   K ++V+ L ++A P +Q+PVF++F LA  RM    VPGL+ GG+ WF DL+ +DP  ILP L     ++NLELG      +         NL   +IL  P+ +    + VF YW TS+++   Q F LR+  VR  L  P + K + QS  +     + G   +  A  E             K ++  + Q+         L+AY  R+K + KQ + + E  K+ E S
Sbjct:  130 PVGFLQQCLEYIYVFTGLPWWASIATLTVIIRFCMVPLLIGMIRNLSTLALIHPEVQNHMKALK---EAQLEGDIIEQTKRTQ----SIQKLFKEYKVNPLKSLAMPFIQMPVFISFYLACSRMASLPVPGLKNGGLGWFNDLSASDPYFILPFLNSSLMFINLELGSEVGSSASTNANMKMRNLFRMIILLTPLFTIKFQSAVFCYWITSNIFSLGQGFMLRHSSVRHFLNLPPL-KPKTQSDKSDNSKDSEGFKSNFIAMVEGIKNTHRQVLETSKNVYKTSNQSNKHRPVDKTLEAYMLRKKIKYKQKQENKE--KQHETS 443          
BLAST of EWM27696.1 vs. NCBI_GenBank
Match: gi|698802366|ref|XP_009834212.1| (hypothetical protein H257_09631 [Aphanomyces astaci] >gi|574110589|gb|ETV76087.1| hypothetical protein H257_09631 [Aphanomyces astaci])

HSP 1 Score: 138.658 bits (348), Expect = 5.507e-34
Identity = 99/279 (35.48%), Postives = 139/279 (49.82%), Query Frame = 0
Query:   80 IPQIDPTTWHAWVFDSIPVRSMQTLLEVTHEATGLPWWASIVLSTLAFRLALLPVVRYQAHALARLARAAPLVLALNRA-LSKRLDGVRAGDWAGTTAVCQDYAAGVRAALKLHQVSLLAAIASPIVQLPVFVTFALANRRMIDQ-QVPGLEEGGVAWFEDLTEADPLLILPVLCLGSTYLNLELGFARLHESQI-ILRFLKDNLQLFLILGAPVSSTLPAGVFIYWFTSSVYGHAQHFALRNPDVRLLLGFPTVPKERLQSGGAAKEGPASGHTVSTP 355
            +P  DP     WV     V + Q L+E  H  TGLPWWA+   + +A R  L P++ YQ  A  R+A AA     + +A L  R+    A       A    Y  GV+   + H    +  +A+P+VQ+P F+  A + R ++   +V GL+ GGV  F++L EAD   ILP L +G TYLN EL    +  S+I +L+ LK+  Q   +L  P    +P G+F YW  SS    AQ  ALR P +R  LG   VP        +A++ PA     STP
Sbjct:   52 VPVDDP-----WVL----VDAAQRLIEAVHVTTGLPWWATFGATAIAVRGTLFPLMVYQIKATERMAEAAKDTREVWKAYLYARMFLPPAIPQKQVEAFQLMY-KGVKLTWEKHNTHPIQCVATPLVQIPTFLLMAYSTRELVRSGKVDGLDTGGVWLFQNLVEADSTFILPALAVGCTYLNFEL----MGTSKIKLLQSLKNKFQYIPLLSFPFICQIPQGIFFYWLASSWCSFAQTMALRQPSIRRALGLKDVPTATASPSISAQD-PAKSLLPSTP 315          
BLAST of EWM27696.1 vs. NCBI_GenBank
Match: gi|1183327178|gb|ORX56936.1| (hypothetical protein DM01DRAFT_1334493 [Hesseltinella vesiculosa])

HSP 1 Score: 139.428 bits (350), Expect = 9.601e-34
Identity = 76/243 (31.28%), Postives = 130/243 (53.50%), Query Frame = 0
Query:   97 PVRSMQTLLEVTHEATGLPWWASIVLSTLAFRLALLPVVRYQAHALARLARAAPLVLALNRALSKRLDGVRAGDWAGTTAVCQDYAAGVRAALKLHQVSLLAAIASPIVQLPVFVTFALANRRMIDQQVPGLEEGGVAWFEDLTEADPLLILPVLCLGSTYLNLELGFARLHESQIILRFLKDNLQLFLILGAPVSSTLPAGVFIYWFTSSVYGHAQHFALRNPDVRLLLGFPTV--PKERLQ 337
            PV  ++ +LE  H + GLPWWA+I  +T+  R ALLP++        +L R    ++ +N  + + +  ++     G T     Y+  ++   K ++   + ++  P++Q+PV ++F +A R M +  VPG+ +GG+AWF DLT  DP  +LP +        LE G      +    + +K+ ++   +L  P ++ +P+GVFIYW TS+VY   Q  AL+NP +R  L  P +  P + LQ
Sbjct:   97 PVGGLEAMLEAVHVSMGLPWWATIATATVLVRTALLPLI-------IKLQRNNARLMNINPDVQRIMGNLKTAQSEGDTLATTKYSGELQELFKKNECHPMKSLGLPLIQMPVMISFFMALRAMAELPVPGMVDGGLAWFTDLTAKDPYYVLPAVSAAGMLAVLEAG-TEAGSATPQSKGMKNFMRGVTVLMVPFTAWMPSGVFIYWLTSNVYSIGQILALKNPAIRKGLNIPQLIKPAKELQ 331          
BLAST of EWM27696.1 vs. NCBI_GenBank
Match: gi|298707359|emb|CBJ30003.1| (Oxa1-like homolog, mitochondrial inner membrane insertase [Ectocarpus siliculosus])

HSP 1 Score: 135.961 bits (341), Expect = 1.357e-33
Identity = 79/227 (34.80%), Postives = 125/227 (55.07%), Query Frame = 0
Query:  100 SMQTLLEVTHEATGLPWWASIVLSTLAFRLALLPVVRYQAHALARLARAAPLVLALNRALSKRLDGVRAGDWAGTTAVCQDYAAGVRAALKLHQVSLLAAIASPIVQLPVFVTFALANRRMI-DQQVPGLEEGGVAWFEDLTEADPL--LILPVLCLGSTYLNLELGFARLHESQIILRFLKDNLQLFLILGAPVSSTLPAGVFIYWFTSSVYGHAQHFALRNPDVR 323
             +Q+ ++  H  TGLPWWA+I ++T+  +++LLPVV YQA  + R+  A P +  L   L+  L+ +            + + +G R  L LH   L    A+P+V LPVF+TF  + R M+ D  VPGL+ G         EAD +  L+LP++    TY +LE+   ++  +   ++F +D +Q F+IL  P  ST P GVF+YW  S+V+   Q + ++N  VR
Sbjct:    6 GVQSGVQAVHHTTGLPWWATIAVATIGVKISLLPVVVYQAGHMDRMRAAWPEIQILRGYLATSLEEIPQERVLERWRKYKVFFSGARGVLGLHGTHLRGMFATPLVNLPVFITFVWSIRGMLRDGTVPGLDTG---------EADTVHSLMLPIIGTLCTYTSLEI--VKMKGATGWMKFFQDGMQTFIILMLPWVSTFPQGVFMYWIPSAVFQMGQTYTMKNNKVR 221          
The following BLAST results are available for this feature:
BLAST of EWM27696.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109968|gb|EWM27696.1|0.000e+0100.00mitochondrial inner membrane protein oxa1l [Nannoc... [more]
gi|553195489|ref|XP_005856156.1|1.045e-7499.15mitochondrial inner membrane oxa1l-like protein, p... [more]
gi|1173954017|gb|OQS01516.1|5.311e-3733.70Cytochrome Oxidase Biogenesis (Oxa1) Family [Achly... [more]
gi|1183482219|gb|ORZ06012.1|1.888e-3532.7960Kd inner membrane protein-domain-containing prot... [more]
gi|1173927265|gb|OQR81304.1|1.294e-3436.97Cytochrome Oxidase Biogenesis (Oxa1) Family, parti... [more]
gi|1021057451|emb|SAM06360.1|3.654e-3429.86hypothetical protein [Absidia glauca][more]
gi|1069859087|ref|XP_018226730.1|4.678e-3431.17hypothetical protein T552_00950 [Pneumocystis cari... [more]
gi|698802366|ref|XP_009834212.1|5.507e-3435.48hypothetical protein H257_09631 [Aphanomyces astac... [more]
gi|1183327178|gb|ORX56936.1|9.601e-3431.28hypothetical protein DM01DRAFT_1334493 [Hesseltine... [more]
gi|298707359|emb|CBJ30003.1|1.357e-3334.80Oxa1-like homolog, mitochondrial inner membrane in... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2993rna2993Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications