rna2990, rna2990 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2990
Unique Name	rna2990
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3539
Alignment location	CM002460.1:429877..430701 -

Link to JBrowse

Properties


Property Name	Value
Product	trafficking protein particle complex subunit 3
Orig transcript id	gnl\|cribi\|Naga_100104g12.5961.mrna
Orig protein id	gnl\|cribi\|Naga_100104g12.5961
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:429877..430701 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100104g12	gene2869	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2990	rna2990-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27698.1	cds2982	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:429877..430701-
coding sequence from alignment at CM002460.1:429877..430701-

mRNA sequence

>rna2990 ID=rna2990|Name=rna2990|organism=Nannochloropsis gaditana|type=mRNA|length=3539bp
AAAAGAAGCATTCAATTACACCCCTTTCGGCATATTTCTAGCTCCCCGGC
GCGAGTACGCGGCCCCCAAAGGCCATTTTTCTTATGACATGTGGCCCTTC
ACACAAAGACATTTGCTGTATTACTTTAGTGATACGAAGACCGCAAGTTT
CTAGATGAAGACGCGCTCTTGATAATATTCGCGCACGCCGCAGGCGTTGT
GCCAGTTTTCTCAATCACCAAGGATTTCCCTATCACGCTTTGGTCCCCAG
ATAAAGGCAGAAAGTCTGTGATAAAGAGGGCCTGTGCGTCTGTAGCGGGT
ACCGCTAAGGTACCATGTCGCCCGGAAAGGTCCCCCAACGCGCATGGTTT
GAAAGGAGAGTTATTAAGCTGAGAGCATGCGGGGAGGCCGCCGGGGTTCA
AGAGCTTGGCCCCTAACGACCCACAAGGTGCATCATAAACAGCGAAAGAC
ACGGGGTCACTGGGTGCAGCACTTCCGTCAGCTACCACGACATCCATAAA
GATGGTGGTGTCGGCGATGTTACTGTCCTGCGGCTGGGTAAATATGGCCT
TGCCCACATAAGGGCCCTCCGTGAATTCTGCCGTAGCGGTGACAAGGGCT
TGATCCTTGTACATGATGGTGCCGCAAGCGAAGCGAGTACCGTCTTTCTC
ATGAATGACGATCGATCGTCCCATAATGCTGGAGTTTAGTTGAAAAAAAA
AGAAGAGCATTAAATCACCGGGGACTGGCAAGGAAGCAAGCACGAAGATC
CCGCTGCCACGACTCACCTGTTGAATCCGAAGAGGGTCAAGTGGGGATCT
GTGATGGACCTTTGCACGTCACCACCTGTCAACAGCTGGGATATAAGAAA
CGAATGTGAAGCACTACGATCGCACAGATTCAGGAGAGGGAGTCCCCTGA
GGTCGAAAGAGACCCCCCCGAGACCCCTCTGCGGGCGCGTGCAGGAGGCG
CGAGCCCCGGACTCACCCCGAACTTGGTAGAGAGGTCGCCAGCCTCGCAC
TCTGTCGCATCCTTGCAAGTTTTATAGGTGGCAGTCACGTTGAAGGGGTT
GTAGTGCCCCGACGTGGAATTGGCGGAGCAGCCGTCCTGAACAGGGAGAC
GATGGATGTGCCAGGGCCCAACAGAGTCCCTTAGCGTCGTCAAGTTCAAC
TTCATTTCTAGGGGGCTTTTAAAGGTTGCCTGGCTTAGATGGACATCTCC
AGTCACACCATTATTAAATACAACCACAGCCTCTTTGGGTTGCAGTCCCG
GATCAGAACCCGGGCTCGCATGATTCACGGCAGCTGCTGTTTGTGCGATT
AAAAAAACGGGACAGGATAAAAGACGTCTGTTGAGGCTCTAAAAAGCTTA
TATCGACGTAGCATTACAAGGGATCATGCCTGTTTCTTTCGAATGCGCAA
CGCTGACCCTTAGCAAGGACATCCCCCAGAACAAGGATCAAGAAGCGTTT
TATGTTGAGCTTGTGCTATAGAACGCGAAGAACACGGGGAAAAGGACAGC
AGAGGGGAACTGGATCCATAGATTTGATTACGAGGCATCTGTTCAATGAT
TTCGATATCCAACATTGAGAATAGGAACGAAAAATTATCGCACAGGAAAC
AGCCGATAGCCAGAGGGGGGTCCTAAACACTAGGCGTTGTGGATATGTTG
CCTGAATCCATTGTTGACGGGGCGCATCAAGAGTTTCCTTAAAAAACCAA
TAACATTGATCGAAACAGTGTATCCATTACGGATTTTTTTGCGTGTGACG
CGGATTACATGTGGCAGGAGCGCGACCTAAGGGTATTTGCAGCGCGCTGT
GCCGGAGTAAGATCGAAGGCTTGAGGAACACAGACGTACCTGTCAGGACC
AGCCATGTCGCGCCTAGGACTAGACGCAGCGGCATATTTGTCTCGGATGC
TTTGAATCAACCGTCCTGCGTAAAATCGGTGAAATGGCCACGTCAAACCA
TAGTGTGGGAGAGATGTTGCACCTGAAGGCCTGATTTTTCGTGCTTCCGT
CGGGGAAATCGCTTGGGCGCAAATATCTCCTCGCCGTGTGCCGCTGGGAA
CAAAACTTCAACAGGTTTCTACCCTACCACGGTGCCACAAATGCCTGAGA
CCGGTACATGATAAATGTATTCGCTTGTTGGCTCACATAACCATTATACC
TGTCTAGTAGTAGGCGCAAGTCCAAGATGCCACCGCCCGCAGAATCAGAC
CCCCACAATCTACAGCACGAAATGCTCCCCTCCCCCATACAGACCCTGGA
CATGGACGCGTACCGCGACCAAACCACCTCCCTGTCGTGTCGCGAGGCAG
AGTGTCGAAAAGCAGCACTCAGCCTCGAGACTACGGGCTGCTTATATGTG
CGAGACTCTCGAGTACGTGAGGCAGACAGTAACGCTTTCTTAGATATGCT
TGAAAGCTACTTTGCCGCATCCGACGGCAAGCGTGACGCCCGCCCTGACC
TGTACTATCAAGTGGGAGTCACCCCCGCCATGATCGAGACGCCTCGCAAC
CACTGCACCCGTGCCTCCAGCCTTCCTCCACTCCATCGTCCACTCACCCT
TTGCCCTCCGCACGCAGATCCCAAATGGCGCTTCTTCTGGCGCGTGGGCC
CGCACCCTCCCACCCCCTCCAAGTTCCAGCCTCTTAACGCCCCGCCCGTC
GTCCCTCCGGATTACCCCTACTGGTCGAAGGTGATGGACATGTGGGGAGG
GAAGATGCTGCAGGCGGTCTGGGGCGTGGCAGAGGCCGTGGCGGAGGGCT
TCGGGCTGCCCCCGGACTCCTTCACGCGTCGCATGGAGTATGGGCCCCAC
CTGTTGGCGCCGACAGGCTCGGACTTTGGGAGGCACGGGGCGCTGGGGAC
GGTCTTGGCGGGGTACCACTACGACCTGAATTTCCTGACCATTCACGGAC
GGGCCCGATTCCCGGGTCTAAGCGTGTGGCTGCGCGATGGGAGGAAGATC
CCGGTGAGGGTGCCGGCGGGGTGCCTGCTGGTGCAGGCAGGGAGGCAAAT
GGAGCACCTGACGGGGGGTAGGGTGCTGGCGGGCTTCCACGAGGTGGCCG
TGGGGTCGGAGACAGTGGAGGCAATAGCACGGAGAAAGGCGGAGGGGGGG
TCCCTGTGGCGAGTGTCCTCGACGCTCTTCAGTCATATCGCCTCCGACCA
GGTCTTGCGGCCTTTGCTGGGGAAAGGGGGGGGCAGGGAGGGGACTGCAA
CTGGAGAAGAAGGTTATCCGCCGCTCATGGCGGGGGAGCTGGTGATGGAG
GAGCTGCGTGCTATCAAGCTGGGAGGGGAGTAGGGAGAGGACAGGGGGCG
GACGAGCTTCGGTCGGCAAGGTCTGGGAGTTTAATACGAAAGCAACGACC
CAAGATGTCCTGGCTCATCTGGACAATAGAGCGCATTGCGATAGAGAGAG
GACTCTGCCGAGCCCCTGTGTCTCCCTCGGGGACCTCGCCCGGGCGCGGG
CGAGGTCCGGGACTGAGAGGAGGTTCCCGCCAACTCAAATCGTCAACGCA
TTTTATTGTTACAGTCCGCATGCATACAACCCCTTTGCC

protein sequence of rna2990

>rna2990-protein ID=rna2990-protein|Name=rna2990|organism=Nannochloropsis gaditana|type=polypeptide|length=193bp
MSSSSSRSAATRAGDQAWTKMSKMNAELFNLTYGAMVMQLIRDYEDVQAV
NQQLETMGYSIGQKLVDEFLAKSGVGNCANFREVAETLAKVGFKMFLGVV
VEVTAWNAEGTAFSLQVYDNPLADFVELPPQYSGLVYSNILCGVIRGALE
MIKYQVECRFVKDGLKGDEVNEIRVELRQMVDESFGEEYNEGA

mRNA from alignment at CM002460.1:429877..430701-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2990 ID=rna2990|Name=rna2990|organism=Nannochloropsis gaditana|type=mRNA|length=825bp|location=Sequence derived from alignment at CM002460.1:429877..430701- (Nannochloropsis gaditana)
ATGTCATCATCAAGCAGCCGCTCTGCTGCCACTCGCGCAGGGGATCAAGC
CTGGACCAAGATGAGCAAAATGGTACGTTTTGTCTTTCTTAATGAAGTTG
CATTCTCTAGATCTGACACGTGAACTCGACTCCCCGCCAGAATGCCGAAT
TATTTAATCTCACATACGGGGCCATGGTCATGCAGCTGATTCGAGACTAC
GAGGACGTGCAAGCCGTAAATCAACAACTTGAGACGATGTAGGTGTGAAG
GGGATAGAACAAAGCTCGGGAAGATTTCCGAGCCCCTTCTTACTCCCCTT
TATTTATATGAAGGTCTACTTAGCTGTACTCGGTTGCATGTCATGGATAG
CGTTATTCTAAACGACCATCTACTCATTGATACTTTTGTTCTCACGCCTG
CGCTTCCTTTCAGGGGGTATAGCATCGGCCAGAAACTCGTCGACGAGTTC
CTCGCCAAGTCTGGTGTTGGCAACTGTGCCAATTTCCGTGAAGTTGCTGA
GACGCTGGCGAAAGTAGGGTTTAAAATGTTTTTGGGGGTAGTGGTGGAGG
TGACGGCTTGGAATGCCGAAGGCACAGCTTTCAGTTTGCAGGTGTATGAC
AATCCGCTGGCGGACTTTGTGGAGCTCCCACCTCAATACTCTGGCTTGGT
CTATTCAAACATATTGTGTGGCGTGATACGGGGGGCGTTGGAGATGATCA
AATACCAGGTCGAGTGCCGGTTTGTGAAGGACGGGTTGAAAGGTGACGAG
GTGAATGAAATCAGGGTGGAGTTGAGGCAGATGGTGGACGAGAGTTTCGG
AGAAGAGTACAATGAGGGCGCGTGA

Coding sequence (CDS) from alignment at CM002460.1:429877..430701-

>rna2990 ID=rna2990|Name=rna2990|organism=Nannochloropsis gaditana|type=CDS|length=1746bp|location=Sequence derived from alignment at CM002460.1:429877..430701- (Nannochloropsis gaditana)
GGGGTATAGCATCGGCCAGAAACTCGTCGACGAGTTCCTCGCCAAGTCTG
GTGTTGGCAACTGTGCCAATTTCCGTGAAGTTGCTGAGACGCTGGCGAAA
GTAGGGTTTAAAATGTTTTTGGGGGTAGTGGTGGAGGTGACGGCTTGGAA
TGCCGAAGGCACAGCTTTCAGTTTGCAGGTGTATGACAATCCGCTGGCGG
ACTTTGTGGAGCTCCCACCTCAATACTCTGGCTTGGTCTATTCAAACATA
TTGTGTGGCGTGATACGGGGGGCGTTGGAGATGATCAAATACCAGGTCGA
GTGCCGGTTTGTGAAGGACGGGTTGAAAGGTGACGAGGTGAATGAAATCA
GGGTGGAGTTGAGGCAGATGGTGGACGAGAGTTTCGGAGAAGAGTACAAT
GAGGGCGCGTGAAATGCCGAATTATTTAATCTCACATACGGGGCCATGGT
CATGCAGCTGATTCGAGACTACGAGGACGTGCAAGCCGTAAATCAACAAC
TTGAGACGATATGTCATCATCAAGCAGCCGCTCTGCTGCCACTCGCGCAG
GGGATCAAGCCTGGACCAAGATGAGCAAAATGGGGGTATAGCATCGGCCA
GAAACTCGTCGACGAGTTCCTCGCCAAGTCTGGTGTTGGCAACTGTGCCA
ATTTCCGTGAAGTTGCTGAGACGCTGGCGAAAGTAGGGTTTAAAATGTTT
TTGGGGGTAGTGGTGGAGGTGACGGCTTGGAATGCCGAAGGCACAGCTTT
CAGTTTGCAGGTGTATGACAATCCGCTGGCGGACTTTGTGGAGCTCCCAC
CTCAATACTCTGGCTTGGTCTATTCAAACATATTGTGTGGCGTGATACGG
GGGGCGTTGGAGATGATCAAATACCAGGTCGAGTGCCGGTTTGTGAAGGA
CGGGTTGAAAGGTGACGAGGTGAATGAAATCAGGGTGGAGTTGAGGCAGA
TGGTGGACGAGAGTTTCGGAGAAGAGTACAATGAGGGCGCGTGAAATGCC
GAATTATTTAATCTCACATACGGGGCCATGGTCATGCAGCTGATTCGAGA
CTACGAGGACGTGCAAGCCGTAAATCAACAACTTGAGACGATATGTCATC
ATCAAGCAGCCGCTCTGCTGCCACTCGCGCAGGGGATCAAGCCTGGACCA
AGATGAGCAAAATGGGGGTATAGCATCGGCCAGAAACTCGTCGACGAGTT
CCTCGCCAAGTCTGGTGTTGGCAACTGTGCCAATTTCCGTGAAGTTGCTG
AGACGCTGGCGAAAGTAGGGTTTAAAATGTTTTTGGGGGTAGTGGTGGAG
GTGACGGCTTGGAATGCCGAAGGCACAGCTTTCAGTTTGCAGGTGTATGA
CAATCCGCTGGCGGACTTTGTGGAGCTCCCACCTCAATACTCTGGCTTGG
TCTATTCAAACATATTGTGTGGCGTGATACGGGGGGCGTTGGAGATGATC
AAATACCAGGTCGAGTGCCGGTTTGTGAAGGACGGGTTGAAAGGTGACGA
GGTGAATGAAATCAGGGTGGAGTTGAGGCAGATGGTGGACGAGAGTTTCG
GAGAAGAGTACAATGAGGGCGCGTGAAATGCCGAATTATTTAATCTCACA
TACGGGGCCATGGTCATGCAGCTGATTCGAGACTACGAGGACGTGCAAGC
CGTAAATCAACAACTTGAGACGATATGTCATCATCAAGCAGCCGCTCTGC
TGCCACTCGCGCAGGGGATCAAGCCTGGACCAAGATGAGCAAAATG

Synonyms

Publications