EWM27698.1, cds2982 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27698.1 vs. NCBI_GenBank
Match: gi|585109970|gb|EWM27698.1| (trafficking protein particle complex subunit 3 [Nannochloropsis gaditana]) HSP 1 Score: 397.512 bits (1020), Expect = 4.080e-140 Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0 Query: 1 MSSSSSRSAATRAGDQAWTKMSKMNAELFNLTYGAMVMQLIRDYEDVQAVNQQLETMGYSIGQKLVDEFLAKSGVGNCANFREVAETLAKVGFKMFLGVVVEVTAWNAEGTAFSLQVYDNPLADFVELPPQYSGLVYSNILCGVIRGALEMIKYQVECRFVKDGLKGDEVNEIRVELRQMVDESFGEEYNEGA 193 MSSSSSRSAATRAGDQAWTKMSKMNAELFNLTYGAMVMQLIRDYEDVQAVNQQLETMGYSIGQKLVDEFLAKSGVGNCANFREVAETLAKVGFKMFLGVVVEVTAWNAEGTAFSLQVYDNPLADFVELPPQYSGLVYSNILCGVIRGALEMIKYQVECRFVKDGLKGDEVNEIRVELRQMVDESFGEEYNEGA Sbjct: 1 MSSSSSRSAATRAGDQAWTKMSKMNAELFNLTYGAMVMQLIRDYEDVQAVNQQLETMGYSIGQKLVDEFLAKSGVGNCANFREVAETLAKVGFKMFLGVVVEVTAWNAEGTAFSLQVYDNPLADFVELPPQYSGLVYSNILCGVIRGALEMIKYQVECRFVKDGLKGDEVNEIRVELRQMVDESFGEEYNEGA 193
BLAST of EWM27698.1 vs. NCBI_GenBank
Match: gi|299116869|emb|CBN74981.1| (transport protein particle (TRAPP) component Bet3, putative [Ectocarpus siliculosus]) HSP 1 Score: 269.24 bits (687), Expect = 1.926e-89 Identity = 122/190 (64.21%), Postives = 160/190 (84.21%), Query Frame = 0 Query: 4 SSSRSAATRAGDQAWTKMSKMNAELFNLTYGAMVMQLIRDYEDVQAVNQQLETMGYSIGQKLVDEFLAKSGVGN-CANFREVAETLAKVGFKMFLGVVVEVTAWNAEGTAFSLQVYDNPLADFVELPPQYSGLVYSNILCGVIRGALEMIKYQVECRFVKDGLKGDEVNEIRVELRQMVDESFGEEYNEG 192 ++S + R G+QAW K+SK+NAELF LTYGAMVMQLI+D+EDV AVN+QLE+MGY+IG +L+DEFLAK+GV C + +E A+ +AKV FKMFLGV +V++WN +GTAFSL +YDNPL +FVELPPQYSGL+YSN+LCGVIRGALEM++ +V CR V+D L+GD+VNEIRVEL++M+++ E+Y EG Sbjct: 2 ATSSKSHQRTGEQAWGKISKVNAELFTLTYGAMVMQLIQDFEDVGAVNKQLESMGYNIGVRLIDEFLAKAGVSTPCTDLKETADVVAKVAFKMFLGVTADVSSWNGDGTAFSLLLYDNPLIEFVELPPQYSGLLYSNLLCGVIRGALEMVQMKVSCRCVRDVLRGDDVNEIRVELKEMMEDVMDEDYKEG 191
BLAST of EWM27698.1 vs. NCBI_GenBank
Match: gi|568018070|gb|ETL92247.1| (hypothetical protein L917_09397 [Phytophthora parasitica]) HSP 1 Score: 254.603 bits (649), Expect = 1.082e-83 Identity = 118/188 (62.77%), Postives = 152/188 (80.85%), Query Frame = 0 Query: 5 SSRSAATRAGDQAWTKMSKMNAELFNLTYGAMVMQLIRDYEDVQAVNQQLETMGYSIGQKLVDEFLAKSGVGNCANFREVAETLAKVGFKMFLGVVVEVTAWNAEGTAFSLQVYDNPLADFVELPPQ-YSGLVYSNILCGVIRGALEMIKYQVECRFVKDGLKGDEVNEIRVELRQMVDESFGEEYNE 191 S+ R GD AW+KM K+N ELF LTYG++V QLI+D+ED++ VNQQL+ MGY+IG +LVDEFLAKSGV NC +F++ AE +AKV FKMFLG+ VEV+ WN EGTA SL +YDNPL +FVELPP Y L YSN+LCGV+RGALEM++ +VE +FVKD L+GDEV+EIR+EL+ M++E+ G+EY E Sbjct: 2 STPRPHQRLGDTAWSKMPKVNGELFALTYGSLVTQLIKDFEDLKVVNQQLDKMGYNIGVRLVDEFLAKSGVSNCQDFKDTAEVVAKVAFKMFLGINVEVSQWNTEGTACSLLIYDNPLTEFVELPPSAYGVLWYSNVLCGVLRGALEMVQMRVEAQFVKDVLQGDEVSEIRLELKGMIEETMGDEYKE 189
BLAST of EWM27698.1 vs. NCBI_GenBank
Match: gi|566022847|gb|ETI45758.1| (hypothetical protein F443_09757 [Phytophthora parasitica P1569] >gi|567960142|gb|ETK85706.1| hypothetical protein L915_09562 [Phytophthora parasitica] >gi|567988866|gb|ETL39136.1| hypothetical protein L916_09463 [Phytophthora parasitica] >gi|568048505|gb|ETM45552.1| hypothetical protein L914_09432 [Phytophthora parasitica] >gi|570326452|gb|ETO74400.1| hypothetical protein F444_09854 [Phytophthora parasitica P1976] >gi|570950322|gb|ETP15579.1| hypothetical protein F441_09696 [Phytophthora parasitica CJ01A1] >gi|570983910|gb|ETP43645.1| hypothetical protein F442_09660 [Phytophthora parasitica P10297]) HSP 1 Score: 254.218 bits (648), Expect = 1.376e-83 Identity = 118/188 (62.77%), Postives = 152/188 (80.85%), Query Frame = 0 Query: 5 SSRSAATRAGDQAWTKMSKMNAELFNLTYGAMVMQLIRDYEDVQAVNQQLETMGYSIGQKLVDEFLAKSGVGNCANFREVAETLAKVGFKMFLGVVVEVTAWNAEGTAFSLQVYDNPLADFVELPPQ-YSGLVYSNILCGVIRGALEMIKYQVECRFVKDGLKGDEVNEIRVELRQMVDESFGEEYNE 191 S+ R GD AW+KM K+N ELF LTYG++V QLI+D+ED++ VNQQL+ MGY+IG +LVDEFLAKSGV NC +F++ AE +AKV FKMFLG+ VEV+ WN EGTA SL +YDNPL +FVELPP Y L YSN+LCGV+RGALEM++ +VE +FVKD L+GDEV+EIR+EL+ M++E+ G+EY E Sbjct: 2 STPRPHQRLGDTAWSKMPKVNGELFALTYGSLVTQLIKDFEDLKVVNQQLDKMGYNIGVRLVDEFLAKSGVSNCQDFKDTAEVVAKVAFKMFLGINVEVSQWNTEGTACSLLIYDNPLTEFVELPPSAYGVLWYSNVLCGVLRGALEMVQMRVEAQFVKDVLQGDEVSEIRLELKGMIEEAMGDEYKE 189
BLAST of EWM27698.1 vs. NCBI_GenBank
Match: gi|301101104|ref|XP_002899641.1| (trafficking protein particle complex subunit 3 [Phytophthora infestans T30-4] >gi|262103949|gb|EEY62001.1| trafficking protein particle complex subunit 3 [Phytophthora infestans T30-4]) HSP 1 Score: 253.832 bits (647), Expect = 2.252e-83 Identity = 118/188 (62.77%), Postives = 151/188 (80.32%), Query Frame = 0 Query: 5 SSRSAATRAGDQAWTKMSKMNAELFNLTYGAMVMQLIRDYEDVQAVNQQLETMGYSIGQKLVDEFLAKSGVGNCANFREVAETLAKVGFKMFLGVVVEVTAWNAEGTAFSLQVYDNPLADFVELPPQ-YSGLVYSNILCGVIRGALEMIKYQVECRFVKDGLKGDEVNEIRVELRQMVDESFGEEYNE 191 S+ R GD AW+KM K+N ELF LTYG++V QLI+D+ED++ VNQQL+ MGY+IG +LVDEFLAKSGV NC +F+E +E +AKV FKMFLG+ VEV WN EGTA SL +YDNPL +FVELPP Y L YSN+LCGV+RGALEM++ +VE +FVKD L+GDEV+EIR+EL+ M++E+ G+EY E Sbjct: 2 STPRPHQRLGDTAWSKMPKVNGELFALTYGSLVTQLIKDFEDLKVVNQQLDKMGYNIGVRLVDEFLAKSGVSNCQDFKETSEVVAKVAFKMFLGINVEVAQWNTEGTACSLLIYDNPLTEFVELPPSAYGVLWYSNVLCGVLRGALEMVQMRVEAQFVKDVLQGDEVSEIRLELKGMIEEAMGDEYKE 189
BLAST of EWM27698.1 vs. NCBI_GenBank
Match: gi|953497821|emb|CEG40581.1| (Transport protein particle (TRAPP) complex subunit [Plasmopara halstedii]) HSP 1 Score: 248.825 bits (634), Expect = 1.856e-81 Identity = 116/188 (61.70%), Postives = 151/188 (80.32%), Query Frame = 0 Query: 5 SSRSAATRAGDQAWTKMSKMNAELFNLTYGAMVMQLIRDYEDVQAVNQQLETMGYSIGQKLVDEFLAKSGVGNCANFREVAETLAKVGFKMFLGVVVEVTAWNAEGTAFSLQVYDNPLADFVELPPQ-YSGLVYSNILCGVIRGALEMIKYQVECRFVKDGLKGDEVNEIRVELRQMVDESFGEEYNE 191 S+ R GD AW KMSK+N ELF LTYGA+V QLI+D+ED++ VN+QL+ MGY+IG +LVDEFLAKSGV NC +FR+ +E +AKV FKMFLG+ VEV+ WN GTA SL ++DNPL +FVELPP Y L YSN+LCGV+RGALEM++ +V+ +FVKD L+GDEV+EIR+EL+ M++E+ G+EY E Sbjct: 2 STPRPYQRLGDAAWNKMSKVNGELFALTYGALVTQLIKDFEDLKIVNEQLDKMGYNIGVRLVDEFLAKSGVNNCQDFRDTSEVVAKVAFKMFLGINVEVSQWNTTGTACSLLIHDNPLTEFVELPPSAYGVLWYSNVLCGVLRGALEMVQMRVDAQFVKDVLQGDEVSEIRLELKGMIEEAMGDEYKE 189
BLAST of EWM27698.1 vs. NCBI_GenBank
Match: gi|676391157|ref|XP_009038856.1| (hypothetical protein AURANDRAFT_59205 [Aureococcus anophagefferens] >gi|676399921|ref|XP_009043238.1| hypothetical protein AURANDRAFT_35563 [Aureococcus anophagefferens] >gi|323445472|gb|EGB02063.1| hypothetical protein AURANDRAFT_35563 [Aureococcus anophagefferens] >gi|323450394|gb|EGB06275.1| hypothetical protein AURANDRAFT_59205 [Aureococcus anophagefferens]) HSP 1 Score: 240.736 bits (613), Expect = 2.966e-78 Identity = 114/190 (60.00%), Postives = 149/190 (78.42%), Query Frame = 0 Query: 3 SSSSRSAATRAGDQAWTKMSKMNAELFNLTYGAMVMQLIRDYEDVQAVNQQLETMGYSIGQKLVDEFLAKSGVGNCANFREVAETLAKVGFKMFLGVVVEVTAWNAEGTAFSLQVYDNPLADFVELPPQYSGLVYSNILCGVIRGALEMIKYQVECRFVKDGLKGDEVNEIRVELRQMVDESFGEEYNEG 192 S+SS+S A R G+Q W KM K+NAE F LTYG MV+QL++D+EDV+ VN++LE+MG+ IG +L+DEFLAKSG+ NC +F E + +AKV FKMFLGV V+V WNA+ TA SL +YDNPL DFVE+PP + L+YSNILCGVIRGALEMI +V+ FV+D L+GD+VNEIRVEL++ + ++Y EG Sbjct: 2 SASSKSHA-RIGEQVWAKMPKINAEFFCLTYGTMVVQLMKDFEDVREVNKKLESMGHGIGMRLIDEFLAKSGINNCHDFSETCDVIAKVAFKMFLGVGVDVANWNADKTACSLLLYDNPLNDFVEIPPN-TNLLYSNILCGVIRGALEMIMMKVDAFFVRDVLRGDDVNEIRVELKERMVSEMDDQYKEG 189
BLAST of EWM27698.1 vs. NCBI_GenBank
Match: gi|695415691|ref|XP_009526637.1| (hypothetical protein PHYSODRAFT_285951 [Phytophthora sojae] >gi|348677762|gb|EGZ17579.1| hypothetical protein PHYSODRAFT_285951 [Phytophthora sojae]) HSP 1 Score: 234.572 bits (597), Expect = 4.669e-76 Identity = 110/172 (63.95%), Postives = 143/172 (83.14%), Query Frame = 0 Query: 21 MSKMNAELFNLTYGAMVMQLIRDYEDVQAVNQQLETMGYSIGQKLVDEFLAKSGVGNCANFREVAETLAKVGFKMFLGVVVEVTAWNAEGTAFSLQVYDNPLADFVELPPQ-YSGLVYSNILCGVIRGALEMIKYQVECRFVKDGLKGDEVNEIRVELRQMVDESFGEEYNE 191 M K+N ELF LTYG++V QLI+D+ED++ VNQQL+ MGY+IG +LVDEFLAKSGV +C +FR+ AE +AKV FKMFLG+ VEV+ WNAEG A SL +Y+NPL +FVELPP Y L YSN+LCGV+RGALEM++ +VE +FVKD L+GDEV+EIR+EL+ M++E+ G+EY E Sbjct: 1 MPKVNGELFALTYGSLVTQLIKDFEDLKVVNQQLDKMGYNIGVRLVDEFLAKSGVASCQDFRDTAEVVAKVAFKMFLGINVEVSQWNAEGNACSLLIYENPLTEFVELPPSAYGVLWYSNVLCGVLRGALEMVQMRVEAQFVKDVLQGDEVSEIRLELKGMIEEAMGDEYKE 172
BLAST of EWM27698.1 vs. NCBI_GenBank
Match: gi|669138042|ref|XP_008604589.1| (hypothetical protein SDRG_00865 [Saprolegnia diclina VS20] >gi|813126442|ref|XP_012197028.1| hypothetical protein SPRG_03057 [Saprolegnia parasitica CBS 223.65] >gi|530743778|gb|EQC42020.1| hypothetical protein SDRG_00865 [Saprolegnia diclina VS20] >gi|641538752|gb|KDO32583.1| hypothetical protein SPRG_03057 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 230.72 bits (587), Expect = 3.036e-74 Identity = 108/182 (59.34%), Postives = 142/182 (78.02%), Query Frame = 0 Query: 11 TRAGDQAWTKMSKMNAELFNLTYGAMVMQLIRDYEDVQAVNQQLETMGYSIGQKLVDEFLAKSGVGNCANFREVAETLAKVGFKMFLGVVVEVTAWNAEGTAFSLQVYDNPLADFVELPPQYSG-LVYSNILCGVIRGALEMIKYQVECRFVKDGLKGDEVNEIRVELRQMVDESFGEEYNE 191 RAG+ AW KM K+NAE F LTYGA+V QLI+D+ED++ VN QLE MGY+IG +L+DEFLAKSGV CA+F+E A+ +AKV FKMFLG+ V+V + SL +Y+NP ++FVELPPQ G L YSNILCGV+RGALEM++ +VE +F KD L+GD+V EIR+EL+ M++E+ G+EY E Sbjct: 4 VRAGEAAWAKMPKVNAEFFALTYGAVVTQLIKDFEDLKEVNSQLEKMGYNIGIRLIDEFLAKSGVAACADFKETADVIAKVAFKMFLGINVDVAPTDMPNVC-SLVLYENPFSEFVELPPQAHGVLAYSNILCGVLRGALEMVQMRVEAKFTKDTLQGDDVTEIRLELKGMIEEAMGDEYKE 184
BLAST of EWM27698.1 vs. NCBI_GenBank
Match: gi|1214712723|gb|OWZ23650.1| (hypothetical protein PHMEG_0001456 [Phytophthora megakarya]) HSP 1 Score: 252.292 bits (643), Expect = 4.254e-74 Identity = 114/178 (64.04%), Postives = 147/178 (82.58%), Query Frame = 0 Query: 12 RAGDQAWTKMSKMNAELFNLTYGAMVMQLIRDYEDVQAVNQQLETMGYSIGQKLVDEFLAKSGVGNCANFREVAETLAKVGFKMFLGVVVEVTAWNAEGTAFSLQVYDNPLADFVELPPQ-YSGLVYSNILCGVIRGALEMIKYQVECRFVKDGLKGDEVNEIRVELRQMVDESFGEE 188 R GD AW+KM K+N ELF LTYGA+V QLI+D+ED++ VNQQL+ MGY+IG +LVDEFLAKSGV NC +F+E AE +AKV FKMFLG+ V+V+ WNAE A SL +YDNPL +FVELPP Y L YSN+LCGV+RGALEM++ +VE +FVKD L+GDEV+EIR+EL+ M++E+ G++ Sbjct: 1101 RVGDAAWSKMPKVNGELFALTYGALVTQLIKDFEDLKVVNQQLDKMGYNIGVRLVDEFLAKSGVANCQDFKETAEVVAKVAFKMFLGINVDVSQWNAEANACSLLIYDNPLTEFVELPPSAYGVLWYSNVLCGVLRGALEMVQMRVEAQFVKDVLQGDEVSEIRLELKGMIEEAMGDD 1278 The following BLAST results are available for this feature:
BLAST of EWM27698.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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