EWM27698.1, cds2982 (CDS) Nannochloropsis gaditana

Overview
NameEWM27698.1
Unique Namecds2982
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:430630..430701 -
Alignment locationCM002460.1:430464..430561 -
Alignment locationCM002460.1:429877..430288 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27698.1
Producttrafficking protein particle complex subunit 3
Orig transcript idgnl|cribi|Naga_100104g12.5961.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:430630..430701 -
CM002460.1supercontigCM002460.1:430464..430561 -
CM002460.1supercontigCM002460.1:429877..430288 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0005794Golgi apparatus
GO:0005783endoplasmic reticulum
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR024096NO_sig/Golgi_transp_ligand-bd
IPR007194TRAPP_component
IPR016721TRAPP_I_complex_Bet3
Homology
BLAST of EWM27698.1 vs. NCBI_GenBank
Match: gi|585109970|gb|EWM27698.1| (trafficking protein particle complex subunit 3 [Nannochloropsis gaditana])

HSP 1 Score: 397.512 bits (1020), Expect = 4.080e-140
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0
Query:    1 MSSSSSRSAATRAGDQAWTKMSKMNAELFNLTYGAMVMQLIRDYEDVQAVNQQLETMGYSIGQKLVDEFLAKSGVGNCANFREVAETLAKVGFKMFLGVVVEVTAWNAEGTAFSLQVYDNPLADFVELPPQYSGLVYSNILCGVIRGALEMIKYQVECRFVKDGLKGDEVNEIRVELRQMVDESFGEEYNEGA 193
            MSSSSSRSAATRAGDQAWTKMSKMNAELFNLTYGAMVMQLIRDYEDVQAVNQQLETMGYSIGQKLVDEFLAKSGVGNCANFREVAETLAKVGFKMFLGVVVEVTAWNAEGTAFSLQVYDNPLADFVELPPQYSGLVYSNILCGVIRGALEMIKYQVECRFVKDGLKGDEVNEIRVELRQMVDESFGEEYNEGA
Sbjct:    1 MSSSSSRSAATRAGDQAWTKMSKMNAELFNLTYGAMVMQLIRDYEDVQAVNQQLETMGYSIGQKLVDEFLAKSGVGNCANFREVAETLAKVGFKMFLGVVVEVTAWNAEGTAFSLQVYDNPLADFVELPPQYSGLVYSNILCGVIRGALEMIKYQVECRFVKDGLKGDEVNEIRVELRQMVDESFGEEYNEGA 193          
BLAST of EWM27698.1 vs. NCBI_GenBank
Match: gi|299116869|emb|CBN74981.1| (transport protein particle (TRAPP) component Bet3, putative [Ectocarpus siliculosus])

HSP 1 Score: 269.24 bits (687), Expect = 1.926e-89
Identity = 122/190 (64.21%), Postives = 160/190 (84.21%), Query Frame = 0
Query:    4 SSSRSAATRAGDQAWTKMSKMNAELFNLTYGAMVMQLIRDYEDVQAVNQQLETMGYSIGQKLVDEFLAKSGVGN-CANFREVAETLAKVGFKMFLGVVVEVTAWNAEGTAFSLQVYDNPLADFVELPPQYSGLVYSNILCGVIRGALEMIKYQVECRFVKDGLKGDEVNEIRVELRQMVDESFGEEYNEG 192
            ++S  +  R G+QAW K+SK+NAELF LTYGAMVMQLI+D+EDV AVN+QLE+MGY+IG +L+DEFLAK+GV   C + +E A+ +AKV FKMFLGV  +V++WN +GTAFSL +YDNPL +FVELPPQYSGL+YSN+LCGVIRGALEM++ +V CR V+D L+GD+VNEIRVEL++M+++   E+Y EG
Sbjct:    2 ATSSKSHQRTGEQAWGKISKVNAELFTLTYGAMVMQLIQDFEDVGAVNKQLESMGYNIGVRLIDEFLAKAGVSTPCTDLKETADVVAKVAFKMFLGVTADVSSWNGDGTAFSLLLYDNPLIEFVELPPQYSGLLYSNLLCGVIRGALEMVQMKVSCRCVRDVLRGDDVNEIRVELKEMMEDVMDEDYKEG 191          
BLAST of EWM27698.1 vs. NCBI_GenBank
Match: gi|568018070|gb|ETL92247.1| (hypothetical protein L917_09397 [Phytophthora parasitica])

HSP 1 Score: 254.603 bits (649), Expect = 1.082e-83
Identity = 118/188 (62.77%), Postives = 152/188 (80.85%), Query Frame = 0
Query:    5 SSRSAATRAGDQAWTKMSKMNAELFNLTYGAMVMQLIRDYEDVQAVNQQLETMGYSIGQKLVDEFLAKSGVGNCANFREVAETLAKVGFKMFLGVVVEVTAWNAEGTAFSLQVYDNPLADFVELPPQ-YSGLVYSNILCGVIRGALEMIKYQVECRFVKDGLKGDEVNEIRVELRQMVDESFGEEYNE 191
            S+     R GD AW+KM K+N ELF LTYG++V QLI+D+ED++ VNQQL+ MGY+IG +LVDEFLAKSGV NC +F++ AE +AKV FKMFLG+ VEV+ WN EGTA SL +YDNPL +FVELPP  Y  L YSN+LCGV+RGALEM++ +VE +FVKD L+GDEV+EIR+EL+ M++E+ G+EY E
Sbjct:    2 STPRPHQRLGDTAWSKMPKVNGELFALTYGSLVTQLIKDFEDLKVVNQQLDKMGYNIGVRLVDEFLAKSGVSNCQDFKDTAEVVAKVAFKMFLGINVEVSQWNTEGTACSLLIYDNPLTEFVELPPSAYGVLWYSNVLCGVLRGALEMVQMRVEAQFVKDVLQGDEVSEIRLELKGMIEETMGDEYKE 189          
BLAST of EWM27698.1 vs. NCBI_GenBank
Match: gi|566022847|gb|ETI45758.1| (hypothetical protein F443_09757 [Phytophthora parasitica P1569] >gi|567960142|gb|ETK85706.1| hypothetical protein L915_09562 [Phytophthora parasitica] >gi|567988866|gb|ETL39136.1| hypothetical protein L916_09463 [Phytophthora parasitica] >gi|568048505|gb|ETM45552.1| hypothetical protein L914_09432 [Phytophthora parasitica] >gi|570326452|gb|ETO74400.1| hypothetical protein F444_09854 [Phytophthora parasitica P1976] >gi|570950322|gb|ETP15579.1| hypothetical protein F441_09696 [Phytophthora parasitica CJ01A1] >gi|570983910|gb|ETP43645.1| hypothetical protein F442_09660 [Phytophthora parasitica P10297])

HSP 1 Score: 254.218 bits (648), Expect = 1.376e-83
Identity = 118/188 (62.77%), Postives = 152/188 (80.85%), Query Frame = 0
Query:    5 SSRSAATRAGDQAWTKMSKMNAELFNLTYGAMVMQLIRDYEDVQAVNQQLETMGYSIGQKLVDEFLAKSGVGNCANFREVAETLAKVGFKMFLGVVVEVTAWNAEGTAFSLQVYDNPLADFVELPPQ-YSGLVYSNILCGVIRGALEMIKYQVECRFVKDGLKGDEVNEIRVELRQMVDESFGEEYNE 191
            S+     R GD AW+KM K+N ELF LTYG++V QLI+D+ED++ VNQQL+ MGY+IG +LVDEFLAKSGV NC +F++ AE +AKV FKMFLG+ VEV+ WN EGTA SL +YDNPL +FVELPP  Y  L YSN+LCGV+RGALEM++ +VE +FVKD L+GDEV+EIR+EL+ M++E+ G+EY E
Sbjct:    2 STPRPHQRLGDTAWSKMPKVNGELFALTYGSLVTQLIKDFEDLKVVNQQLDKMGYNIGVRLVDEFLAKSGVSNCQDFKDTAEVVAKVAFKMFLGINVEVSQWNTEGTACSLLIYDNPLTEFVELPPSAYGVLWYSNVLCGVLRGALEMVQMRVEAQFVKDVLQGDEVSEIRLELKGMIEEAMGDEYKE 189          
BLAST of EWM27698.1 vs. NCBI_GenBank
Match: gi|301101104|ref|XP_002899641.1| (trafficking protein particle complex subunit 3 [Phytophthora infestans T30-4] >gi|262103949|gb|EEY62001.1| trafficking protein particle complex subunit 3 [Phytophthora infestans T30-4])

HSP 1 Score: 253.832 bits (647), Expect = 2.252e-83
Identity = 118/188 (62.77%), Postives = 151/188 (80.32%), Query Frame = 0
Query:    5 SSRSAATRAGDQAWTKMSKMNAELFNLTYGAMVMQLIRDYEDVQAVNQQLETMGYSIGQKLVDEFLAKSGVGNCANFREVAETLAKVGFKMFLGVVVEVTAWNAEGTAFSLQVYDNPLADFVELPPQ-YSGLVYSNILCGVIRGALEMIKYQVECRFVKDGLKGDEVNEIRVELRQMVDESFGEEYNE 191
            S+     R GD AW+KM K+N ELF LTYG++V QLI+D+ED++ VNQQL+ MGY+IG +LVDEFLAKSGV NC +F+E +E +AKV FKMFLG+ VEV  WN EGTA SL +YDNPL +FVELPP  Y  L YSN+LCGV+RGALEM++ +VE +FVKD L+GDEV+EIR+EL+ M++E+ G+EY E
Sbjct:    2 STPRPHQRLGDTAWSKMPKVNGELFALTYGSLVTQLIKDFEDLKVVNQQLDKMGYNIGVRLVDEFLAKSGVSNCQDFKETSEVVAKVAFKMFLGINVEVAQWNTEGTACSLLIYDNPLTEFVELPPSAYGVLWYSNVLCGVLRGALEMVQMRVEAQFVKDVLQGDEVSEIRLELKGMIEEAMGDEYKE 189          
BLAST of EWM27698.1 vs. NCBI_GenBank
Match: gi|953497821|emb|CEG40581.1| (Transport protein particle (TRAPP) complex subunit [Plasmopara halstedii])

HSP 1 Score: 248.825 bits (634), Expect = 1.856e-81
Identity = 116/188 (61.70%), Postives = 151/188 (80.32%), Query Frame = 0
Query:    5 SSRSAATRAGDQAWTKMSKMNAELFNLTYGAMVMQLIRDYEDVQAVNQQLETMGYSIGQKLVDEFLAKSGVGNCANFREVAETLAKVGFKMFLGVVVEVTAWNAEGTAFSLQVYDNPLADFVELPPQ-YSGLVYSNILCGVIRGALEMIKYQVECRFVKDGLKGDEVNEIRVELRQMVDESFGEEYNE 191
            S+     R GD AW KMSK+N ELF LTYGA+V QLI+D+ED++ VN+QL+ MGY+IG +LVDEFLAKSGV NC +FR+ +E +AKV FKMFLG+ VEV+ WN  GTA SL ++DNPL +FVELPP  Y  L YSN+LCGV+RGALEM++ +V+ +FVKD L+GDEV+EIR+EL+ M++E+ G+EY E
Sbjct:    2 STPRPYQRLGDAAWNKMSKVNGELFALTYGALVTQLIKDFEDLKIVNEQLDKMGYNIGVRLVDEFLAKSGVNNCQDFRDTSEVVAKVAFKMFLGINVEVSQWNTTGTACSLLIHDNPLTEFVELPPSAYGVLWYSNVLCGVLRGALEMVQMRVDAQFVKDVLQGDEVSEIRLELKGMIEEAMGDEYKE 189          
BLAST of EWM27698.1 vs. NCBI_GenBank
Match: gi|676391157|ref|XP_009038856.1| (hypothetical protein AURANDRAFT_59205 [Aureococcus anophagefferens] >gi|676399921|ref|XP_009043238.1| hypothetical protein AURANDRAFT_35563 [Aureococcus anophagefferens] >gi|323445472|gb|EGB02063.1| hypothetical protein AURANDRAFT_35563 [Aureococcus anophagefferens] >gi|323450394|gb|EGB06275.1| hypothetical protein AURANDRAFT_59205 [Aureococcus anophagefferens])

HSP 1 Score: 240.736 bits (613), Expect = 2.966e-78
Identity = 114/190 (60.00%), Postives = 149/190 (78.42%), Query Frame = 0
Query:    3 SSSSRSAATRAGDQAWTKMSKMNAELFNLTYGAMVMQLIRDYEDVQAVNQQLETMGYSIGQKLVDEFLAKSGVGNCANFREVAETLAKVGFKMFLGVVVEVTAWNAEGTAFSLQVYDNPLADFVELPPQYSGLVYSNILCGVIRGALEMIKYQVECRFVKDGLKGDEVNEIRVELRQMVDESFGEEYNEG 192
            S+SS+S A R G+Q W KM K+NAE F LTYG MV+QL++D+EDV+ VN++LE+MG+ IG +L+DEFLAKSG+ NC +F E  + +AKV FKMFLGV V+V  WNA+ TA SL +YDNPL DFVE+PP  + L+YSNILCGVIRGALEMI  +V+  FV+D L+GD+VNEIRVEL++ +     ++Y EG
Sbjct:    2 SASSKSHA-RIGEQVWAKMPKINAEFFCLTYGTMVVQLMKDFEDVREVNKKLESMGHGIGMRLIDEFLAKSGINNCHDFSETCDVIAKVAFKMFLGVGVDVANWNADKTACSLLLYDNPLNDFVEIPPN-TNLLYSNILCGVIRGALEMIMMKVDAFFVRDVLRGDDVNEIRVELKERMVSEMDDQYKEG 189          
BLAST of EWM27698.1 vs. NCBI_GenBank
Match: gi|695415691|ref|XP_009526637.1| (hypothetical protein PHYSODRAFT_285951 [Phytophthora sojae] >gi|348677762|gb|EGZ17579.1| hypothetical protein PHYSODRAFT_285951 [Phytophthora sojae])

HSP 1 Score: 234.572 bits (597), Expect = 4.669e-76
Identity = 110/172 (63.95%), Postives = 143/172 (83.14%), Query Frame = 0
Query:   21 MSKMNAELFNLTYGAMVMQLIRDYEDVQAVNQQLETMGYSIGQKLVDEFLAKSGVGNCANFREVAETLAKVGFKMFLGVVVEVTAWNAEGTAFSLQVYDNPLADFVELPPQ-YSGLVYSNILCGVIRGALEMIKYQVECRFVKDGLKGDEVNEIRVELRQMVDESFGEEYNE 191
            M K+N ELF LTYG++V QLI+D+ED++ VNQQL+ MGY+IG +LVDEFLAKSGV +C +FR+ AE +AKV FKMFLG+ VEV+ WNAEG A SL +Y+NPL +FVELPP  Y  L YSN+LCGV+RGALEM++ +VE +FVKD L+GDEV+EIR+EL+ M++E+ G+EY E
Sbjct:    1 MPKVNGELFALTYGSLVTQLIKDFEDLKVVNQQLDKMGYNIGVRLVDEFLAKSGVASCQDFRDTAEVVAKVAFKMFLGINVEVSQWNAEGNACSLLIYENPLTEFVELPPSAYGVLWYSNVLCGVLRGALEMVQMRVEAQFVKDVLQGDEVSEIRLELKGMIEEAMGDEYKE 172          
BLAST of EWM27698.1 vs. NCBI_GenBank
Match: gi|669138042|ref|XP_008604589.1| (hypothetical protein SDRG_00865 [Saprolegnia diclina VS20] >gi|813126442|ref|XP_012197028.1| hypothetical protein SPRG_03057 [Saprolegnia parasitica CBS 223.65] >gi|530743778|gb|EQC42020.1| hypothetical protein SDRG_00865 [Saprolegnia diclina VS20] >gi|641538752|gb|KDO32583.1| hypothetical protein SPRG_03057 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 230.72 bits (587), Expect = 3.036e-74
Identity = 108/182 (59.34%), Postives = 142/182 (78.02%), Query Frame = 0
Query:   11 TRAGDQAWTKMSKMNAELFNLTYGAMVMQLIRDYEDVQAVNQQLETMGYSIGQKLVDEFLAKSGVGNCANFREVAETLAKVGFKMFLGVVVEVTAWNAEGTAFSLQVYDNPLADFVELPPQYSG-LVYSNILCGVIRGALEMIKYQVECRFVKDGLKGDEVNEIRVELRQMVDESFGEEYNE 191
             RAG+ AW KM K+NAE F LTYGA+V QLI+D+ED++ VN QLE MGY+IG +L+DEFLAKSGV  CA+F+E A+ +AKV FKMFLG+ V+V   +      SL +Y+NP ++FVELPPQ  G L YSNILCGV+RGALEM++ +VE +F KD L+GD+V EIR+EL+ M++E+ G+EY E
Sbjct:    4 VRAGEAAWAKMPKVNAEFFALTYGAVVTQLIKDFEDLKEVNSQLEKMGYNIGIRLIDEFLAKSGVAACADFKETADVIAKVAFKMFLGINVDVAPTDMPNVC-SLVLYENPFSEFVELPPQAHGVLAYSNILCGVLRGALEMVQMRVEAKFTKDTLQGDDVTEIRLELKGMIEEAMGDEYKE 184          
BLAST of EWM27698.1 vs. NCBI_GenBank
Match: gi|1214712723|gb|OWZ23650.1| (hypothetical protein PHMEG_0001456 [Phytophthora megakarya])

HSP 1 Score: 252.292 bits (643), Expect = 4.254e-74
Identity = 114/178 (64.04%), Postives = 147/178 (82.58%), Query Frame = 0
Query:   12 RAGDQAWTKMSKMNAELFNLTYGAMVMQLIRDYEDVQAVNQQLETMGYSIGQKLVDEFLAKSGVGNCANFREVAETLAKVGFKMFLGVVVEVTAWNAEGTAFSLQVYDNPLADFVELPPQ-YSGLVYSNILCGVIRGALEMIKYQVECRFVKDGLKGDEVNEIRVELRQMVDESFGEE 188
            R GD AW+KM K+N ELF LTYGA+V QLI+D+ED++ VNQQL+ MGY+IG +LVDEFLAKSGV NC +F+E AE +AKV FKMFLG+ V+V+ WNAE  A SL +YDNPL +FVELPP  Y  L YSN+LCGV+RGALEM++ +VE +FVKD L+GDEV+EIR+EL+ M++E+ G++
Sbjct: 1101 RVGDAAWSKMPKVNGELFALTYGALVTQLIKDFEDLKVVNQQLDKMGYNIGVRLVDEFLAKSGVANCQDFKETAEVVAKVAFKMFLGINVDVSQWNAEANACSLLIYDNPLTEFVELPPSAYGVLWYSNVLCGVLRGALEMVQMRVEAQFVKDVLQGDEVSEIRLELKGMIEEAMGDD 1278          
The following BLAST results are available for this feature:
BLAST of EWM27698.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109970|gb|EWM27698.1|4.080e-140100.00trafficking protein particle complex subunit 3 [Na... [more]
gi|299116869|emb|CBN74981.1|1.926e-8964.21transport protein particle (TRAPP) component Bet3,... [more]
gi|568018070|gb|ETL92247.1|1.082e-8362.77hypothetical protein L917_09397 [Phytophthora para... [more]
gi|566022847|gb|ETI45758.1|1.376e-8362.77hypothetical protein F443_09757 [Phytophthora para... [more]
gi|301101104|ref|XP_002899641.1|2.252e-8362.77trafficking protein particle complex subunit 3 [Ph... [more]
gi|953497821|emb|CEG40581.1|1.856e-8161.70Transport protein particle (TRAPP) complex subunit... [more]
gi|676391157|ref|XP_009038856.1|2.966e-7860.00hypothetical protein AURANDRAFT_59205 [Aureococcus... [more]
gi|695415691|ref|XP_009526637.1|4.669e-7663.95hypothetical protein PHYSODRAFT_285951 [Phytophtho... [more]
gi|669138042|ref|XP_008604589.1|3.036e-7459.34hypothetical protein SDRG_00865 [Saprolegnia dicli... [more]
gi|1214712723|gb|OWZ23650.1|4.254e-7464.04hypothetical protein PHMEG_0001456 [Phytophthora m... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2990rna2990Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications