rna2985, rna2985 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2985
Unique Name	rna2985
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1408
Alignment location	CM002460.1:421231..424247 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100104g8.5964.mrna
Orig protein id	gnl\|cribi\|Naga_100104g8.5964
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:421231..424247 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100104g8	gene2865	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2985	rna2985-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27701.1	cds2977	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:421231..424247+
coding sequence from alignment at CM002460.1:421231..424247+

mRNA sequence

>rna2985 ID=rna2985|Name=rna2985|organism=Nannochloropsis gaditana|type=mRNA|length=1408bp
TACTCCGACGTGTCATCGAGACATTTACTGGTGGCTGATATTACGGGTTG
CATACGGCAGAAGTCATGTCCTGCCACCCCTTTTCTCGCTCATCCCCCTT
ACACCCACATCCCCTCTTCCCTCCGCTTCCGGCGCAGGTATAGCGGGCAA
CACCGGGGCACAGAGACATTGGGATTGGATAGCCCTCACATCTGCTATTT
TAAGTATGGAGATGAACAAAGACGAGGCAGAGCGCTGCCTGGAACTCGGA
CGCAAGTTTTTGCGGGATGGTTCATACGCCAAAGCCATCAAATTTCTCGA
CAAATCCCTCAAGCTGTATCCCTTGCCGGGAGTGGAGGCACTTAAAGCAC
GGGCCGAGTCCGAGTGGGAACGATCAACCGGCAGTACCAGCCGGAATGGC
GGCGGCAGCAATAGTGCGAATGCGGATGGTGGTGCGGGGCAATTACCACG
ACGACGAGCGCCGGGGGGCGGAGGCGAGGGTGGTGGAGGAGGGTCAAAAG
CCGGTCAAAATGGACGCTCGTACTCGGAGGAGCAGGTGGTGGCGTGTCGC
ACTATCATTCAGTCGAAGAAGAAGGGGCATTACGAGGTGTTGAGCGTCTC
GCGTACAGCCACGGACGATCAAATAAAGAAGTCGTACCGGAAGCTGGCCC
TGAAGTTCCATCCTGACAAGAACGCGGCGCCCCAGGCGGACGAGGCCTTC
AAGGCTATCAGCACGGCCTTCCAGGTCCTCAGCGACCCGGACAAGCGGCG
GTCCTACGACCAGTTCGGCGACGACGACGGCACAGAGGGGATGGGCGGCC
AAGCGCACCCCTTCCGACACGCAGATGTCTCGCCCGAGGAAATCTTCAAC
ATGTTTTTCGGCGTGAACGGTGGCGGTCGGCCCGCAAATTTCCGTGTCTA
CAGGTCTCACCATGATCAGCGCAACCCTTTCTTCCGGTACCAGCAGCAGC
AGCAGCACCGACAGGGGCAGGCTCAGCCTCCTCTCGGCGCCCTGCCCCAA
GTCCTGCAGCTCCTCCCCGTTCTCCTCCTCCTCTTCCTCTCCCTCTTCTC
CTTCCCTCAGGAGAGCGAGCGGGCCTTCTCCCTGCATCGCACAGATCGGC
ACCCCCTGCAGCGGTCCACCTCCATGGAGCACATCCTCCCCAACATCCCT
TACTTCGTCGGCCAGTCCTTTGGACGCGACTACGCGCGAGACCGGCGCCG
GCTCTTCCAAGTGGAGAGGGAGGTCCAGCAATCCTACTTGTACGACCTGC
AGCGCCAGTGCGAGGGGCAGAAGCAGAACAAGGTCCGACGGGTGCAGGCG
GCGCGAAGGCTGTTCAATGCGGAAGAGCGCGCCAAGCGGATGGCGGAAGC
GGACGCGCTCCCTTTGGAGGCCTGCCGTCTCTTTCAAGAGGCCACCCGGC
TGTTGTAA

protein sequence of rna2985

>rna2985-protein ID=rna2985-protein|Name=rna2985|organism=Nannochloropsis gaditana|type=polypeptide|length=396bp
MSWRLLAGGRGRLEWLICLICCFQTASTALAFVCGQGGLLSGLVSKHDRR
SSQSTGFREGLPSGLRLHHLPPQGIGRHDETPVVALFSRTVQEDETRGTR
VGSNPALTPGKGIRAQRLKDLLLEKELRNDISTAEFALRLDVPRVESEAV
DAKVSKSGVGEGRKTPYTPKLKPRGVIDYEKIAEKLEKSLELIDRRQERL
SAAVSRDSRLSGNSEGDPASGTHFVGEEAALRVTRRLSETRTELQNVLFR
VRASMASAASDGGGKFTSGGGGGSSSSSKGGNSSSAFVGAASGTAAAGGV
PGGEESERSLNPLTVFVREDGTVDWDGAFQSGKELAKYSGEVLERLQGKS
PGEEAPPAKASTSLATIDSSPGMQLLQRYLQELESELRAAEDERDK

mRNA from alignment at CM002460.1:421231..424247+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2985 ID=rna2985|Name=rna2985|organism=Nannochloropsis gaditana|type=mRNA|length=3017bp|location=Sequence derived from alignment at CM002460.1:421231..424247+ (Nannochloropsis gaditana)
CTGGACAGGCTAGAAGTTTCTCACGTTGTCTATGAGCTGGAGGCTTCTTG
CCGGGGGCCGCGGTCGCTTAGAATGGTTGATTTGCCTGATCTGTTGCTTT
CAGACGGCTTCCACCGCGTTGGCCTTCGTGTGTGGTCAGGGAGGTCTTTT
GAGCGGCCTCGTGTCGAAACACGATAGGAGATCATCACAGGTATGAATGC
CAGATGTTTGTTGTGTGGAATTTATGTTAAGCGATTCAACCGACGGGTTT
TGCCTGTGCCGTCCCTTCTCTCAGTCCACAGGATTTCGAGAGGGCTTGCC
TTCTGGCCTTCGTTTACATCATTTGCCACCTCAAGGGATTGGGAGGCACG
ATGAGACGCCGGTTGTTGCGCTTTTTAGTAGGACAGTCCAGGAAGATGAG
ACCCGCGGGACGCGTGTGGGATCTAATCCGGCATTGACGCCTGGTAAAGG
CATCCGGGCGCAACGGCTAAAGGACCTGCTTCTAGAGAAGGAACTGCGGA
ACGACATCTCCACCGCCGAGTTCGCACTAAGACTCGACGTGCCTCGTGTG
GAGAGCGAAGCAGTAGATGCGAAGGTTTCGAAGagcggggtgggggaggg
ccgaAAAACGCCATACACCCCCAAACTAAAGCCGCGGGGAGTCATTGACT
ACGAAAAGATCGCCGAAAAGCTCGAAAAGAGCCTGGAGCTGATCGACCGG
CGACAAGAGCGTCTTTCCGCGGCGGTAAGTCGAGATTCGCGCTTGTCTGG
AAACTCGGAAGGCGATCCCGCGAGTGGCACTCATTTCgtaggagaggagg
ctgCCCTTCGCGTGACTCGGCGCCTGAGCGAGACCCGCACCGAGCTTCAA
AATGTCTTGTTCCGGGTTCGAGCTTCCATGGCAAGCGCTGCCAGTGATGG
AGGCGGTAAGTTTACcagcggaggaggcggtggcagcagcagcagcagca
aggggggcaacagcagcagtGCCTTTGTCGGGGCTGCGTCTGGGACGGCC
GCTGCGGGTGGGgtaccggggggggaggagagcgagcgGTCGTTGAACCC
TTTGACCGTCTtcgtgagggaggacgggactgTGGACTGGGACGGGGCTT
TTCAAAGCGGAAAAGAACTTGCCAAGTACAGCGGGGAAGTCTTGGAGCGA
CTGCAGGGCAAGAGcccaggggaagaggcgccGCCAGCCAAAGCCAGCAC
GAGCCTCGCGACCATAGACAGTAGTCCGGGgatgcagctcctccagcggT
ATTTGCAGGAGCTCGAATCAGAGCTGCGCGCGGCTGAGGATGAACGCGAC
AAGTGAGTGGTCCCTGGGCTCCGAGTGGGGCGCAACCAATGTTTCTTAGG
GCGCGGGGGCAAGTGGATGACGAAGTGGTGTTGGGGACACGCCTATTAGC
TCATCGTCGCGAGGCTCACCCTTGGGCTTGACTCCATCACACACGTCAGG
ATCTTGGAGCTGCACAAAGCACTGCGGAAGCAGAACCTGGACGTGAGCAA
GGCCCAGAAAGGGGAGCTTCGGATCGCGGAGGACCAGGCCGTGGAGATGA
AAAGACGCGTCGAGCTTCAGGTAAGGATAGAGGTCCTCTAGTTTTTGTCT
GTGTATGATTGCAGTGTTGTGCTGGCACCCAGCAGCGGTGGCCACTGGAA
GCGTTCGGTCGTGAAGCAACGCTTTCTTGCGTGCGTCGTGCCCAGTACCC
TGTACGCTCTGGAGATCTGTCTTCGGTGAACTCGCATCGATGCCAGTAAC
GTGTGTGACAGAGCATTAACCAAGCTGCACACATTTGTTACTCCCACTTG
AAATATAGCGGCTAGACATGGACATGGAGCGTGCGTGTGCTTACATAGAA
CAGGAAATTGAGCAATCTACTTCAATCCGTGAGCAGAAGTTGCTTGTCGC
TGAGTTTGGCCTCCTTGATGCCCAACTCTCTACGCTACTGACAATGCTGC
AGGCGGCCGAGGTACGTCACTCGATGGCGTAGTGAGCTTTAGTTTCAATG
CTGAGGGTGCTAAATCAAACCATGTGTTGAAGGGCAGCATGGCGGGAAGC
CCTGGTTCCAGATAGAGTCTCATGCTGGTACTCTGCTCCGCCCTGGCGAA
GGTATCGATCATGGTTTGGGCGATGTGTCGCCTTGTTATCTCGAGTGCTC
TTTGCAGGCCTTTACAGGTCGTTCGACTTTTTCAACCTCTATCTCACCGA
GTTCAATATTGTACCACTCATACCACATGGCCTATCACACGTGCGTGGTT
TCACAGCCAAACTTGGACGCATCTTCTTGCTTGATGGATTTAGACGAGGA
TGAGTTGCGAGTAGTTGCGAGTGAGGTTCAGGATTTGAAGTCACGTCTGG
GCCTGATAGAAGACGCCACTGGTGGACCGAAGCTGGACTGGTCGCTTGTC
AATACATATGTGCAGGACAGCATTGGAAAAATCAGAAATGGTATCTCATT
CTACGTAACGGGCGCCAAGCTTCTCACGTCAGACCTGCAATACGCGTGGT
GGCTCATCTCTCGCGCGGCGCAAGGCTACACGCTTAAGCCTCGCGAGGTC
CGCACGTTACAGCGCACGGCCAAGGACTTGCTCACGCTGATTCCTTTTAC
CATCATCCTGATTTTCCCCTTGACGCCGATCGGTCATGTACTCGTAttct
ccctcatccagcGCATCTTTCCCGATTTTTTCCCGAGCACTTTTACGGAG
CGCCGTCAAAACCTCTCCAAGATGTATGACGAGATCGACAAGAAACCCCT
TGTCGAAGGACCTGCGCCCCCCGCTAAGGGCAAATGATCTCAGTCGTGCg
gaagggcagggaagcACTACCGAGCACATGTATTTTTTTGCAGTAAAAAT
GTGATGCATTAAGAAAGGAGCTGCACGGAATAGGAGTAAGCGGATGTCAT
GTAGCATAACATTACCAATGCACGTGCGAGTAATACGCGACGAGTCCGAG
AAAGACTCTAACTTTGAAAGCCGTTGAAGCAAAGAATTACATAATCCAAG
CGAGCGTGGCCTGTTAA

Coding sequence (CDS) from alignment at CM002460.1:421231..424247+

>rna2985 ID=rna2985|Name=rna2985|organism=Nannochloropsis gaditana|type=CDS|length=2382bp|location=Sequence derived from alignment at CM002460.1:421231..424247+ (Nannochloropsis gaditana)
ATGAGCTGGAGGCTTCTTGCCGGGGGCCGCGGTCGCTTAGAATGGTTGAT
TTGCCTGATCTGTTGCTTTCAGACGGCTTCCACCGCGTTGGCCTTCGTGT
GTGGTCAGGGAGGTCTTTTGAGCGGCCTCGTGTCGAAACACGATAGGAGA
TCATCACAGTCCACAGGATTTCGAGAGGGCTTGCCTTCTGGCCTTCGTTT
ACATCATTTGCCACCTCAAGGGATTGGGAGGCACGATGAGACGCCGGTTG
TTGCGCTTTTTAGTAGGACAGTCCAGGAAGATGAGACCCGCGGGACGCGT
GTGGGATCTAATCCGGCATTGACGCCTGGTAAAGGCATCCGGGCGCAACG
GCTAAAGGACCTGCTTCTAGAGAAGGAACTGCGGAACGACATCTCCACCG
CCGAGTTCGCACTAAGACTCGACGTGCCTCGTGTGGAGAGCGAAGCAGTA
GATGCGAAGGTTTCGAAGagcggggtgggggagggccgaAAAACGCCATA
CACCCCCAAACTAAAGCCGCGGGGAGTCATTGACTACGAAAAGATCGCCG
AAAAGCTCGAAAAGAGCCTGGAGCTGATCGACCGGCGACAAGAGCGTCTT
TCCGCGGCGGTAAGTCGAGATTCGCGCTTGTCTGGAAACTCGGAAGGCGA
TCCCGCGAGTGGCACTCATTTCgtaggagaggaggctgCCCTTCGCGTGA
CTCGGCGCCTGAGCGAGACCCGCACCGAGCTTCAAAATGTCTTGTTCCGG
GTTCGAGCTTCCATGGCAAGCGCTGCCAGTGATGGAGGCGGTAAGTTTAC
cagcggaggaggcggtggcagcagcagcagcagcaaggggggcaacagca
gcagtGCCTTTGTCGGGGCTGCGTCTGGGACGGCCGCTGCGGGTGGGgta
ccggggggggaggagagcgagcgGTCGTTGAACCCTTTGACCGTCTtcgt
gagggaggacgggactgTGGACTGGGACGGGGCTTTTCAAAGCGGAAAAG
AACTTGCCAAGTACAGCGGGGAAGTCTTGGAGCGACTGCAGGGCAAGAGc
ccaggggaagaggcgccGCCAGCCAAAGCCAGCACGAGCCTCGCGACCAT
AGACAGTAGTCCGGGgatgcagctcctccagcggTATTTGCAGGAGCTCG
AATCAGAGCTGCGCGCGGCTGAGGATGAACGCGACAAGTGAATGAGCTGG
AGGCTTCTTGCCGGGGGCCGCGGTCGCTTAGAATGGTTGATTTGCCTGAT
CTGTTGCTTTCAGACGGCTTCCACCGCGTTGGCCTTCGTGTGTGGTCAGG
GAGGTCTTTTGAGCGGCCTCGTGTCGAAACACGATAGGAGATCATCACAG
TCCACAGGATTTCGAGAGGGCTTGCCTTCTGGCCTTCGTTTACATCATTT
GCCACCTCAAGGGATTGGGAGGCACGATGAGACGCCGGTTGTTGCGCTTT
TTAGTAGGACAGTCCAGGAAGATGAGACCCGCGGGACGCGTGTGGGATCT
AATCCGGCATTGACGCCTGGTAAAGGCATCCGGGCGCAACGGCTAAAGGA
CCTGCTTCTAGAGAAGGAACTGCGGAACGACATCTCCACCGCCGAGTTCG
CACTAAGACTCGACGTGCCTCGTGTGGAGAGCGAAGCAGTAGATGCGAAG
GTTTCGAAGagcggggtgggggagggccgaAAAACGCCATACACCCCCAA
ACTAAAGCCGCGGGGAGTCATTGACTACGAAAAGATCGCCGAAAAGCTCG
AAAAGAGCCTGGAGCTGATCGACCGGCGACAAGAGCGTCTTTCCGCGGCG
GTAAGTCGAGATTCGCGCTTGTCTGGAAACTCGGAAGGCGATCCCGCGAG
TGGCACTCATTTCgtaggagaggaggctgCCCTTCGCGTGACTCGGCGCC
TGAGCGAGACCCGCACCGAGCTTCAAAATGTCTTGTTCCGGGTTCGAGCT
TCCATGGCAAGCGCTGCCAGTGATGGAGGCGGTAAGTTTACcagcggagg
aggcggtggcagcagcagcagcagcaaggggggcaacagcagcagtGCCT
TTGTCGGGGCTGCGTCTGGGACGGCCGCTGCGGGTGGGgtaccggggggg
gaggagagcgagcgGTCGTTGAACCCTTTGACCGTCTtcgtgagggagga
cgggactgTGGACTGGGACGGGGCTTTTCAAAGCGGAAAAGAACTTGCCA
AGTACAGCGGGGAAGTCTTGGAGCGACTGCAGGGCAAGAGcccaggggaa
gaggcgccGCCAGCCAAAGCCAGCACGAGCCTCGCGACCATAGACAGTAG
TCCGGGgatgcagctcctccagcggTATTTGCAGGAGCTCGAATCAGAGC
TGCGCGCGGCTGAGGATGAACGCGACAAGTGA

Synonyms

Publications