EWM27701.1, cds2977 (CDS) Nannochloropsis gaditana

Overview
NameEWM27701.1
Unique Namecds2977
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:421262..421420 +
Alignment locationCM002460.1:421505..422536 +

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Properties
Property NameValue
Protein idEWM27701.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100104g8.5964.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:421262..421420 +
CM002460.1supercontigCM002460.1:421505..422536 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM27701.1 vs. NCBI_GenBank
Match: gi|585109973|gb|EWM27701.1| (hypothetical protein Naga_100104g8 [Nannochloropsis gaditana])

HSP 1 Score: 789.645 bits (2038), Expect = 0.000e+0
Identity = 396/396 (100.00%), Postives = 396/396 (100.00%), Query Frame = 0
Query:    1 MSWRLLAGGRGRLEWLICLICCFQTASTALAFVCGQGGLLSGLVSKHDRRSSQSTGFREGLPSGLRLHHLPPQGIGRHDETPVVALFSRTVQEDETRGTRVGSNPALTPGKGIRAQRLKDLLLEKELRNDISTAEFALRLDVPRVESEAVDAKVSKSGVGEGRKTPYTPKLKPRGVIDYEKIAEKLEKSLELIDRRQERLSAAVSRDSRLSGNSEGDPASGTHFVGEEAALRVTRRLSETRTELQNVLFRVRASMASAASDGGGKFTSGGGGGSSSSSKGGNSSSAFVGAASGTAAAGGVPGGEESERSLNPLTVFVREDGTVDWDGAFQSGKELAKYSGEVLERLQGKSPGEEAPPAKASTSLATIDSSPGMQLLQRYLQELESELRAAEDERDK 396
            MSWRLLAGGRGRLEWLICLICCFQTASTALAFVCGQGGLLSGLVSKHDRRSSQSTGFREGLPSGLRLHHLPPQGIGRHDETPVVALFSRTVQEDETRGTRVGSNPALTPGKGIRAQRLKDLLLEKELRNDISTAEFALRLDVPRVESEAVDAKVSKSGVGEGRKTPYTPKLKPRGVIDYEKIAEKLEKSLELIDRRQERLSAAVSRDSRLSGNSEGDPASGTHFVGEEAALRVTRRLSETRTELQNVLFRVRASMASAASDGGGKFTSGGGGGSSSSSKGGNSSSAFVGAASGTAAAGGVPGGEESERSLNPLTVFVREDGTVDWDGAFQSGKELAKYSGEVLERLQGKSPGEEAPPAKASTSLATIDSSPGMQLLQRYLQELESELRAAEDERDK
Sbjct:    1 MSWRLLAGGRGRLEWLICLICCFQTASTALAFVCGQGGLLSGLVSKHDRRSSQSTGFREGLPSGLRLHHLPPQGIGRHDETPVVALFSRTVQEDETRGTRVGSNPALTPGKGIRAQRLKDLLLEKELRNDISTAEFALRLDVPRVESEAVDAKVSKSGVGEGRKTPYTPKLKPRGVIDYEKIAEKLEKSLELIDRRQERLSAAVSRDSRLSGNSEGDPASGTHFVGEEAALRVTRRLSETRTELQNVLFRVRASMASAASDGGGKFTSGGGGGSSSSSKGGNSSSAFVGAASGTAAAGGVPGGEESERSLNPLTVFVREDGTVDWDGAFQSGKELAKYSGEVLERLQGKSPGEEAPPAKASTSLATIDSSPGMQLLQRYLQELESELRAAEDERDK 396          
BLAST of EWM27701.1 vs. NCBI_GenBank
Match: gi|299472706|emb|CBN80274.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 68.1662 bits (165), Expect = 9.166e-9
Identity = 70/273 (25.64%), Postives = 116/273 (42.49%), Query Frame = 0
Query:  108 TPGKGIRAQRLKDLLLEKELRNDISTAEFALRLD-----VPRVESEAVDAKVSKSGVGEGRKTPYTPKLK------------PRGVIDYEKIAEKLEKSLELIDRRQERLSAAVSRDSRLSGNSEGDPASGTHFVGEEAALRVTRRLSETRTELQNVLFRVRASMASAASDGGGKFTSGGGGGSSSSSKGGNSSSAFVGAASGTA--AAGGVPGGEESERSLN-------PLTVFVREDGTVDWDGAFQSGKELAKYSGEVLERLQGKSPGEE 354
            T  +  R QRL+ +   K++RN++++AEFAL L+     +            +  G+  G+ T                    +  ID+E IAE+LE SL  +                      G P S    +  +    +T RL    T+++ +            +   G+   G GG S+ +   G +     G   G++   AGG+ G      ++N          +FVR+DGTVDWDGA QSG+E+A++  E+ +R+ G++P EE
Sbjct:   38 TANRTERGQRLRAVNWVKQVRNELTSAEFALNLNGATRGMSTGGGGGGGGGGTPPGIN-GQSTSPGAPSSSAAPAGAGATPGSKSEIDFETIAERLEASLRAL--------------------QAGRPLSLLEAISPDELREITARLKVNLTKIKKI------------TQAEGRSRDGTGGDSAGARSAGEA-----GGEEGSSWRDAGGILGEMTEGINVNLKDVKVPEFDLFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPDEE 272          
The following BLAST results are available for this feature:
BLAST of EWM27701.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585109973|gb|EWM27701.1|0.000e+0100.00hypothetical protein Naga_100104g8 [Nannochloropsi... [more]
gi|299472706|emb|CBN80274.1|9.166e-925.64conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2985rna2985Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications