rna2983, rna2983 (mRNA) Nannochloropsis gaditana

Overview
Namerna2983
Unique Namerna2983
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2850
Alignment locationCM002460.1:417777..418716 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100104g6.5944.mrna
Orig protein idgnl|cribi|Naga_100104g6.5944
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:417777..418716 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100104g6gene2863Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2983rna2983-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27681.1cds2975Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2983 ID=rna2983|Name=rna2983|organism=Nannochloropsis gaditana|type=mRNA|length=2850bp
GTGCCCTCTCGCACGCCCCGCCTCGCCTCGGGTCCGCCGGTCTCCCTGTG
CTGCCGCCATCCCAGCGCGACCGCTTTTGTCCACCTTTTTGTCGCTCACA
ATAGAAATCCTGTGTCTTCAGCATGTAAATGTGCACTAACCAATCTGTTT
CTGCTCGTCTGTGAGGCCTAGGCAAGGTGTAGTCGCCCATTACAGCGGGG
CAGACTTCCATCCACTAACCTCTTCCCCCCTCGGCCCTACCTTGTGTTCT
TTTTATTTTCCCCGACCTCAGGCCTCTTTAGGAGGAGCTGAGCGGTTGTA
TTGTAATTTCACGCTGTGCCTTTGTTATCTCGAGACATTACCATGGACGA
TGGATCGGGCGTGAAGACACGTGTGGACGAGGGGCGGGCAACCCAGCACA
TAGCAGAGAAGGATTCAGACGCAGCCCCTGAGGACCACGGTTCGAGCGGA
GAAGCTGCGACTACGGTAGTAGAAACGGGTATTGTCAAGAAAAGCTCCGA
TGACGAGGGCTCGCGAGAGGAAAGTAAAGAGCGAAAGAAGAAGAAAGACA
AAAAGGAAAAGAAGGAGAAAAAAAGCAAGAAAGAAAAGAAAGAGAAGAAG
CGGAGCCACAGAGACGAGGGCTCGGGAGGGGAAGATGGCGAGAGGAGGAA
GAAGCGGAAGGAGAGGGAGGACGACTTGCAAGGAAAAGAGGAGCCTGAAG
AATCGGACGAGGATTTTCACAGAGAGAGAGCGAGGCGCAGGGAAGATCGC
CGGGATGTGCGGGATTACGAGGTGAGAGGGCGTCGACCCTACGACCGGCA
GCGCTCCCGCTCTCCTCCACGCCCTCGGAACAGACAAACGCGACGGCGGA
GCCTTAGCCCGCCACGCGGGCGAATGCGTGACAATGGGAGACGTGGTGGC
CCAATGCGACGATCTAGATCTCGCTCTCGCTCTCGCTCTCGCTCGCGGGA
CCGTGGCAGCAGGGGCAGACGTCGGGGAGGGCGTCGCTCTCGGTCGGCAG
GGCGCTCGGCATCCCCCCGGGCGAAGTCGCGAAGTCGCAGTGGCTCTTCC
TCCCGGCGCCGGCACCAGAAGAAGGCGAATTCGGACGATGAAGAGGAGAG
CAATGGGGGGAAAGAGGAGGAGTTGGAGCCGGGGTGGGTGGACGTGGTGA
AGGAGGGGGGGATGGGCGGGCCTCTGCCGAGTCTGCAGGACATGCTCGGT
CAGAACAGGGGCATGGGGGTCATGCAGGCTCTCCAAAAGATCGAACAGAT
CAAGCAGCTCCGCGTCTTTGCTGTCCAGGCGGCAGGGCAGGCGCAGCAGC
TTTTGGTGAACACCTTGGCGGCCGCGCGACTGGCAGCAGCCTCGCCCATC
ACCCTGGCCGACTCCACCAAGCCTGCCAGGCAGCTCTACGTAGGGAACCT
GCCGGTAGGGGTGCTCGGGCCGCAGCTTGCCGAGTTTTTGAGCGCGGCTA
TGCAGCAGATGCAGCTGACGATGGGCCCGGGCAGCCCAGTGGTAGGCATC
TGGATGAGCCCCGACGGCCGCTTCGCCCTTGTCGACTTCCGCAGTCTGGA
CGAGGCGAACAAAGCGCTGGCCTTGGACAAGCTGCCGGTGGGCGGCGGGA
CGATGCAGCTTCGCGTAGGCCGGCCGACAGAGTACCGGGAGTTTTACGAG
ACGCTGTTAAAAATGACAGAAACTAATGCTCTTGCAGTCACGGTTCAGCA
CGCTGTGGGTGCGTCGTCAGGCGCCGCCGCCGCCTCTCTCGGCGCGGGCA
CAACCCCCGGGTCCCTATCAGCGACGTCTCTTGCTGGCGGCGGCATGGTG
GGAGCTCCGGCAGCCCAGACAGCGCTGGCAGCTGCTTCGAGCTCCGCGCA
GTCGCAAGGTCAGTTTTTAATGCTGGCCAACGTGCCAGGCATCCTGGGCG
AGGTGGACGTTCGCGCGCTTCTGGAGCCCTTCGGGCAGCTCAAGAGCTTT
AATATGCTCAAGGACAAGGAGGGAATGTCCAAGGGGATCGCCATTTTCGA
GTACGAGGATAAGGCGCAGGCGGGGCTCGCGCTCAAGGGTTTGGCTGGGC
TGGACCTGGGGGGAAAGCGCCTGAGCATCCAGGAGATACCGGCCCATCAA
GCCAGCATGCTTCTACGGCCTGTGGCCACGGCCAGTGGGTCCACGGGGGC
CTCCGAGGAGGAAGGAGGATCTGTGGTGATCCGCTTGCAGAACATGCTGG
CGGATGACACGGACGCGGAAGAGGTGGAGGAGATCAAAGAGGAGGTAATG
GACGAGTGCCGGAAGTACGGGAACGTGGTTTCGGTGCACATGGACCCAGC
GCAAGGCTTTATCTTCGTCGAATTCGGCAGCGCCCGGGCTTCTAAGCGTG
CACAGACGCGCCTGGAGGGTCGCTCCTTTGACGGACGGACCATCAGGTGC
CGGTACTACCCGCTGGAGGCATACCTGAGGCGCGACCTGCACGCGGACCC
GCTCGAGGAAGACACGGCCCCCGCGGAAGCTTCCGTCGGAGAAACAGCGG
GCGGCAATGGAACGACAGAGACTGGTGGCACAGAAGATGGGGTGATGTCG
CTTTCTCTGGGTAAGAAGGAGGAAGAGGGAGCAGAGGGGGCGCGCGAGGA
GGGGAAGGAGGACCCGCCGGAAGAGCCCTTGCCCGTGGCCGTCCCACAGG
CCGTGGAGGAAGACTTAGACTAGGGCGCCCTTGTCCGTGAACGAGTAATG
GATACACACAAGAAAGAAAACGTGAGCGAAGCGCGGACGGGATGACGAGA
TACTTTGTGTTTCTTCCCCCTCGCGCACGTCCCCCTTATCGGTGGCGGGC
GCCCTGTGGTCCAAAACCTCTGTGCATGCAATTCATCAATTTCCTATCCA
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protein sequence of rna2983

>rna2983-protein ID=rna2983-protein|Name=rna2983|organism=Nannochloropsis gaditana|type=polypeptide|length=124bp
MLERSTRPRAPNSPITKRAMPNWWNLPFRDFVVKEVMRPGFREFAVGAAV
VFFGLGLKINAGITDKDREESPYYQDFLAPKKEGPHGFSCLRGVDLTRSR
GDLCAAWAVCATGFCFPKEEKWGS
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mRNA from alignment at CM002460.1:417777..418716+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2983 ID=rna2983|Name=rna2983|organism=Nannochloropsis gaditana|type=mRNA|length=940bp|location=Sequence derived from alignment at CM002460.1:417777..418716+ (Nannochloropsis gaditana)
ATGCTTGAGCGATCAACACGACCCCGGGCCCCAAGTAAGGATTGGCTTGT
CCTAAGAGACTCGGCATCTTGATGCACAGGGATCTCCTGTCTCGAAGCCC
ATCTCTTCTCTCGCACCCGTCTTTGCATGAGTGAGCAATCACTGGCAACA
ATCTAATTTCTCGCAATCATACGTGATTTAGATAGTCCGATCACCAAGAG
AGCCATGCCCAACTGGTGGAATCTTCCTTTCCGAGACTTCGTGGTCAAAG
AGGTAATGCGCCCGGGCTTCAGGGAGTTCGCCGTTGGGGCCGCGTAAGTA
ACTAAAAATGGGGAAAtcgtatatatatatatatgtatatagagagagag
agagttAAGTTCAGGGGACGCGAAGGGTTTAGGCACGATGCAGACTGATG
GCAAGGCTTTTTTTGTGAAAGATGGTAGAGATGAGGTACAGGAAGTTGCT
TCGTGCAGGGGGAAGTATTTGTTCGGATGGGAGGTGTGATTTTGAGCTTA
ATCGGGTGCTACCAATATCCTGGGCGCGTAATGTGATCTGTCAATGATTT
CCCGTTTATCAAAACCTCTATTGTCTTGCTCATGTTTGTACTCTACTTGT
TCTCATTCATGTCCCTCAGCGTGGTCTTCTTCGGACTCGGACTGAAAATC
AATGCCGGCATCACGGACAAGGACCGGGAGGAGAGCCCCTACTACCAAGA
CTTCCTCGCCCctaagaaggagggtggcgccCATGGGCCTCACTAGGGGC
CGGTCTAGGGGAAGGCCGGCACAGGCggatgggtggagggaagggtggga
cgAACGGGAAGTAAGGCCCTCATGGGTTTAGTTGCTTGAGGGGTGTGGAC
TTAACGCGGTCACGCGGCGATCTGTGCGCAGCTTGGGCTGTATGTGCGAC
CGGCTTTTGTTTTcccaaagaagaaaaatggggAAGTTAG
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Coding sequence (CDS) from alignment at CM002460.1:417777..418716+

>rna2983 ID=rna2983|Name=rna2983|organism=Nannochloropsis gaditana|type=CDS|length=1500bp|location=Sequence derived from alignment at CM002460.1:417777..418716+ (Nannochloropsis gaditana)
ATGCTTGAGCGATCAACACGACCCCGGGCCCCAAATAGTCCGATCACCAA
GAGAGCCATGCCCAACTGGTGGAATCTTCCTTTCCGAGACTTCGTGGTCA
AAGAGGTAATGCGCCCGGGCTTCAGGGAGTTCGCCGTTGGGGCCGCCGTG
GTCTTCTTCGGACTCGGACTGAAAATCAATGCCGGCATCACGGACAAGGA
CCGGGAGGAGAGCCCCTACTACCAAGACTTCCTCGCCCctaagaaggagg
GCCCTCATGGGTTTAGTTGCTTGAGGGGTGTGGACTTAACGCGGTCACGC
GGCGATCTGTGCGCAGCTTGGGCTGTATGTGCGACCGGCTTTTGTTTTcc
caaagaagaaaaatggggAAGTTAGATGCTTGAGCGATCAACACGACCCC
GGGCCCCAAATAGTCCGATCACCAAGAGAGCCATGCCCAACTGGTGGAAT
CTTCCTTTCCGAGACTTCGTGGTCAAAGAGGTAATGCGCCCGGGCTTCAG
GGAGTTCGCCGTTGGGGCCGCCGTGGTCTTCTTCGGACTCGGACTGAAAA
TCAATGCCGGCATCACGGACAAGGACCGGGAGGAGAGCCCCTACTACCAA
GACTTCCTCGCCCctaagaaggaggGCCCTCATGGGTTTAGTTGCTTGAG
GGGTGTGGACTTAACGCGGTCACGCGGCGATCTGTGCGCAGCTTGGGCTG
TATGTGCGACCGGCTTTTGTTTTcccaaagaagaaaaatggggAAGTTAG
ATGCTTGAGCGATCAACACGACCCCGGGCCCCAAATAGTCCGATCACCAA
GAGAGCCATGCCCAACTGGTGGAATCTTCCTTTCCGAGACTTCGTGGTCA
AAGAGGTAATGCGCCCGGGCTTCAGGGAGTTCGCCGTTGGGGCCGCCGTG
GTCTTCTTCGGACTCGGACTGAAAATCAATGCCGGCATCACGGACAAGGA
CCGGGAGGAGAGCCCCTACTACCAAGACTTCCTCGCCCctaagaaggagg
GCCCTCATGGGTTTAGTTGCTTGAGGGGTGTGGACTTAACGCGGTCACGC
GGCGATCTGTGCGCAGCTTGGGCTGTATGTGCGACCGGCTTTTGTTTTcc
caaagaagaaaaatggggAAGTTAGATGCTTGAGCGATCAACACGACCCC
GGGCCCCAAATAGTCCGATCACCAAGAGAGCCATGCCCAACTGGTGGAAT
CTTCCTTTCCGAGACTTCGTGGTCAAAGAGGTAATGCGCCCGGGCTTCAG
GGAGTTCGCCGTTGGGGCCGCCGTGGTCTTCTTCGGACTCGGACTGAAAA
TCAATGCCGGCATCACGGACAAGGACCGGGAGGAGAGCCCCTACTACCAA
GACTTCCTCGCCCctaagaaggaggGCCCTCATGGGTTTAGTTGCTTGAG
GGGTGTGGACTTAACGCGGTCACGCGGCGATCTGTGCGCAGCTTGGGCTG
TATGTGCGACCGGCTTTTGTTTTcccaaagaagaaaaatggggAAGTTAG
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Synonyms
Publications