rna298, rna298 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna298
Unique Name	rna298
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	816
Alignment location	CM002455.1:737581..740997 -

Link to JBrowse

Properties


Property Name	Value
Product	nuclear pore complex protein nup98-nup96 isoform 1
Orig transcript id	gnl\|cribi\|Naga_100026g17.10618.mrna
Orig protein id	gnl\|cribi\|Naga_100026g17.10618
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:737581..740997 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100026g17	gene287	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30364.1	cds298	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna298	rna298-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:737581..740997-
coding sequence from alignment at CM002455.1:737581..740997-

mRNA sequence

>rna298 ID=rna298|Name=rna298|organism=Nannochloropsis gaditana|type=mRNA|length=816bp
ATGAGCGGCAGCGGAGAAGTAAATCCCTTCGCTACGCAGAGCGGAGGTGA
CGGAGGACCTGGCGCAGGCAGGAACAGGCCGCCATCTCCACCGCGAGCGG
ATGAGCCCGCATGGTTGAACGCCAATGCCGCCTCTCCCCCGTCGCCCGCC
GCCCCGCACTCCTCGCACGTGCCTATACAGCCCGCCACACTCCAGCCTCA
AGCCGCGACCCAACCGCAGCCTCCAAGCGGACAAACTCCCCCTTTAGTGA
TTTACATGCGCGTGGCAAATTTTGCGCTTTGTATCCTCATGTCTGCGGCT
GCCGTGTTGACGGTCATAGTTCCTGCCGGGGCCACGCCTGCCTCGTGGGT
GCTTGCCTTTTACGTTCTCGCTTTTTCTTGCCTGTTGTGCTGCTTTGAGG
TCAATTTGCGTAGGGTGGCGAAGCACATTGCCAACAACTTTGGCTTCCTC
TACGACGCCAAAAGCCGGGCCACTTTCCTCATCTTCGTCGGCGTCCTCTG
TTTTTCCCTCGGGATCACCGGAAAGGTTGCGGGTGCTGCCATGATAGCCA
ACGCGCTCTTTAACACCGTCGTCCTGTGTAAGTACCCTCAGTACGCCACC
AACGCCCCAACCACCACGGCTGAGCAAGAAGCCGCGCAATTTATGCAGCG
CAACCCCGGATTGGCACGGAAAGGGGCCAGAGGGCCGCACAGGCGGTCGT
CTCTCAGTCGGTGTAAAAGTGTCAAGGAACCGGAGAAGAAGAGACACACC
GCTACTGATGTCAGTCGGTCTGGTACAGTCCAATTTTCTTTCGCCTTACT
TAATCAGGTCTTGTGA

protein sequence of rna298

>rna298-protein ID=rna298-protein|Name=rna298|organism=Nannochloropsis gaditana|type=polypeptide|length=1138bp
MDDAQLRRVRNFCVTREGYGKIEWEGETDVLGLNLDELVRIEAKEVRVYD
DVPVKDEEGKKLNKPAVVTLFSVRHRRKSPEEYGEHLRELCRGWDRVEFL
DYQSETGRWTFKVSHFSKYGVEDEDDEEEGGTTGHELRKGKGGDEADGDG
RVGQKMAQETASGLGTGDSGARTGGYGIPDSDEDDKSVTAEEVELVEDGF
EDEGNEVEGVLSEEERGEEEVMEMPPVGGRAPPLYGLEASRIKTLVGIFG
VEEEDDTEGTEAYGRRARAESEERPLSSLEDDGGFGRRDLFSFSEGRNDG
VLMVEDSVEERAIAMAPSLPSARAVSRVAPAPSASPALGFVAPSLMRGCG
AVKTSPTDDTLLAVATGRRARERAGEEGGTGRKPVDYSAFMGRSFRVGWG
PDGSLAAPFVGRVVRPGMAAKVEAQVLVKSLAVTPEEAGTKGGVEGLRGY
LGPLGVHKAFARGVEPASETRAPRAGFRAGGSPATGDVDVGLYHHMVDCL
HALATEATRREDDASRQTWELFNALWGQEGGGKARPLPLSGSLGALCQVL
LPDGASHNDWERRCQAVCRWLKRIVRREVEDLPVRGSGDESADLRAVLDL
MKSHRITDAASLASKSGFLRLATLIPLAGHKPATDYLRQQPALRRTVQDP
ALAAIYGLLSGTGSEANETSDEGPKAGLDWMRRLGEYMWFKTDGRSPGAG
SAGAGDDDTDRLILAIEAFDDEMPSPPLPAWLRARWERGRGRAWHDARVG
PNSLFYDLLQMYRSEAYPLSLVLDPRGLTENERDYRLSWLMLTLLGALSI
GHPTGPEAVEAATQIWMRVTSSLVFQLVGMGLWPWAVYVLLHAPETPART
DAVKDLVGRFGWAFQPGSTDWSFLVDELGVPAAWLEDARATYLRAQGVLF
LDEGKGASADDALGHFLRAGDTKAAAELIMNVVAPRLLIDDRGPELHALL
AGFLGPERGELTDATINSGNKACWAYLEVLEALRHLEDSWGEKEAPAPAH
FEEQLMAILPSLVDGGQGGDRNGCFNWCAERLDPGEAGRVIDMYAQRGSR
SAPDSMPPPLHAIRNMVLTDVIKKLFFFHRLQARERSMWEEGMAPRSCLP
GKSQLCRLEDMCQDYALQQVGCLTSDFIARRLDGDEVF

mRNA from alignment at CM002455.1:737581..740997-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna298 ID=rna298|Name=rna298|organism=Nannochloropsis gaditana|type=mRNA|length=3417bp|location=Sequence derived from alignment at CM002455.1:737581..740997- (Nannochloropsis gaditana)
ATGGATGACGCCCAGCTTCGGCGGGTCCGAAACTTCTGTGTGACGCGCGA
GGGTTACGGAAAGATCGAGTGGGAGGGGGAGACGGACGTTCTGGGGCTCA
ATCTGGATGAGCTGGTGAGGATCGAGGCCAAGGAGGTGCGCGTGTACGAC
GACGTCCCCGTCAAGGACGAAGAGGGAAAGAAGCTGAATAAGCCGGCGGT
GGTAACCCTCTTCTCGGTGCGTCACCGTCGAAAGAGCCCGGAGGAATACG
GAGAGCACCTTCGGGAGCTCTGCCGTGGATGGGACCGCGTCGAGTTCCTG
GACTACCAGTCCGAGACGGGCCGATGGACGTTTAAGGTCAGCCACTTTAG
CAAGTACGGGGTGGAGGACGAAGACGATGAGGAGGAGGGGGGCACAACGG
GGCATGAGTTGCGGAAGGGAAAGGGGGGAGATGAGGCAGACGGCGACGGA
CGTGTGGGGCAGAAAATGGCGCAAGAGACGGCCTCCGGCCTCGGTACTGG
AGATTCCGGCGCGCGGACCGGCGGGTATGGAATCCCTGACTCGGACGAGG
ACGATAAAAGCGTCACCGCGGAGGAAGTCGAGCTCGTTGAGGATGGCTTT
GAAGACGAAGGTAACGAAGTGGAAGGCGTGCTGTCAGAGGAGGAGCGGGG
GGAGGAGGAAGTCATGGAGATGCCTCCTGTGGGGGGGCGTGCACCGCCGT
TGTACGGTCTGGAGGCAAGTCGTATCAAGACTCTGGTTGGAATATTCGGG
GTGGAGGAGGAGGATGACACGGAGGGGACGGAGGCTTACGGGCGGCGGGC
GCGCGCCGAGTCCGAGGAGCGGCCCTTGTCCAGCCTGGAGGACGACGGGG
GATTTGGCCGGAGGGACCTTTTTTCATTCTCAGAGGGTCGCAACGACGGC
GTGTTGATGGTTGAGGACTCGGTGGAGGAGCGCGCCATTGCAATGGCCCC
ATCGCTTCCATCTGCGCGAGCGGTGTCCCGCGTCGCCCCCGCCCCGAGCG
CCAGCCCTGCCTTGGGCTTCGTGGCCCCCTCCCTGATGCGCGGATGCGGT
GCAGTGAAAACATCGCCGACGGACGATACTCTGCTCGCTGTGGCGACGGG
GAGGCGCGCTCGCGAAAGGGCTGGCGAGGAGGGGGGCACGGGCCGGAAGC
CGGTCGATTACTCTGCCTTTATGGGCCGCTCTTTCCGCGTGGGGTGGGGG
CCGGACGGGTCTTTGGCCGCGCCCTTTGTGGGCCGCGTGGTGCGCCCAGG
GATGGCGGCCAAGGTAGAGGCGCAGGTACTCGTAAAATCTCTGGCGGTGA
CGCCCGAGGAAGCAGGGACGAAAGGAGGGGTGGAAGGGCTAAGGGGCTAC
TTGGGCCCATTGGGTGTGCACAAGGCATTCGCCCGAGGCGTGGAGCCGGC
GTCCGAGACGCGCGCCCCCCGAGCGGGGTTCCGTGCCGGGGGATCGCCAG
CGACGGGGGATGTGGACGTGGGCCTCTACCATCACATGGTCGACTGCCTA
CACGCACTTGCCACGGAGGCGACTCGTCGCGAAGACGACGCAAGCCGGCA
GACCTGGGAGCTGTTCAACGCCTTGTGGGGGCAGGAGGGAGGTGGAAAGG
CGCGACCGTTGCCTCTTTCAGGCTCCCTAGGGGCCCTGTGTCAGGTGCTG
CTCCCGGACGGGGCGAGTCACAACGACTGGGAGCGACGCTGCCAGGCGGT
CTGCCGGTGGCTGAAACGGATCGTCCGGCGTGAGGTGGAGGACCTGCCCG
TGCGAGGCTCAGGCGACGAGAGCGCGGACTTGCGAGCCGTTCTCGACCTG
ATGAAGAGTCATCGCATCACCGATGCCGCTAGTCTGGCGTCCAAGTCGGG
CTTCCTCCGCCTGGCAACACTCATCCCCTTGGCAGGGCACAAGCCTGCCA
CTGACTACCTGCGGCAACAGCCTGCCTTGCGGCGTACCGTTCAGGATCCT
GCACTGGCGGCCATCTATGGACTGCTGAGTGGGACGGGCAGCGAGGCAAA
CGAGACGAGCGACGAGGGGCCGAAGGCCGGACTGGATTGGATGCGGCGCC
TGGGGGAGTATATGTGGTTTAAAACTGACGGACGCTCTCCGGGGGCCGGC
AGTGCGGGGGCTGGAGACGACGACACGGACCGCCTCATCTTGGCGATCGA
GGCGTTTGATGATGAGATGCCCTCTCCCCCCTTGCCTGCGTGGTTGCGAG
CGAGGTGGGAGAGAGGGCGGGGCCGGGCGTGGCATGACGCCCGTGTGGGA
CCGAACTCTCTCTTCTACGACCTCCTGCAGATGTATCGCTCCGAAGCTTA
TCCCCTATCCTTGGTGCTTGATCCGCGCGGCTTGACCGAGAATGAGCGGG
ACTACCGGCTCTCGTGGCTGATGCTCACCCTTTTGGGTGCCTTGAGTATT
GGCCACCCCACAGGACCGGAGGCTGTGGAGGCGGCGACGCAGATTTGGAT
GCGGGTCACGTCAAGCCTCGTGTTCCAACTCGTGGGGATGGGTCTCTGGC
CGTGGGCAGTTTACGTCCTCTTGCACGCCCCAGAGACGCCTGCTCGCACA
GACGCCGTCAAGGATCTGGTTGGCCGTTTCGGATGGGCCTTTCAACCAGG
GAGCACTGACTGGAGCTTCCTGGTCGACGAGTTGGGGGTCCCGGCCGCCT
GGCTGGAAGACGCACGAGCCACCTATTTGAGGGCGCAGGGCGTGCTCTTC
CTAGACGAGGGGAAAGGTGCCTCGGCGGACGACGCGCTGGGGCACTTCCT
GCGCGCGGGCGACACAAAAGCGGCGGCGGAACTTATCATGAACGTTGTTG
CCCCCCGCCTATTGATTGACGACCGCGGTCCCGAGCTCCACGCGCTGCTG
GCAGGCTTTCTGGGGCCCGAGCGGGGAGAGCTCACAGATGCGACCATCAA
CAGCGGGAATAAGGCCTGCTGGGCGTACTTGGAGGTCTTGGAGGCTCTTC
GTCACCTTGAGGACTCTTGGGGAGAGAAAGAGGCACCAGCGCCCGCTCAC
TTCGAAGAGCAATTGATGGCGATCCTGCCGAGCTTGGTAGACGGTGGTCA
AGGCGGCGATCGAAATGGCTGTTTCAACTGGTGCGCAGAGCGACTGGATC
CCGGAGAAGCGGGACGGGTGATTGATATGTATGCGCAGCGGGGGAGCCGA
AGTGCACCTGACTCAATGCCTCCGCCTCTGCATGCAATTCGGAATATGGT
ACTGACGGACGTGATTAAGAAACTGTTTTTCTTCCATCGTCTGCAGGCCA
GGGAGAGGAGCATGTGGGAGGAAGGGATGGCGCCGCGGAGCTGCCTGCCT
GGCAAGTCTCAGTTATGCCGACTGGAGGACATGTGCCAGGATTACGCACT
CCAACAGGTGGGGTGCCTGACAAGCGACTTCATCGCCAGGCGACTCGATG
GGGATGAGGTGTTTTAG

Coding sequence (CDS) from alignment at CM002455.1:737581..740997-

>rna298 ID=rna298|Name=rna298|organism=Nannochloropsis gaditana|type=CDS|length=3417bp|location=Sequence derived from alignment at CM002455.1:737581..740997- (Nannochloropsis gaditana)
ATGGATGACGCCCAGCTTCGGCGGGTCCGAAACTTCTGTGTGACGCGCGA
GGGTTACGGAAAGATCGAGTGGGAGGGGGAGACGGACGTTCTGGGGCTCA
ATCTGGATGAGCTGGTGAGGATCGAGGCCAAGGAGGTGCGCGTGTACGAC
GACGTCCCCGTCAAGGACGAAGAGGGAAAGAAGCTGAATAAGCCGGCGGT
GGTAACCCTCTTCTCGGTGCGTCACCGTCGAAAGAGCCCGGAGGAATACG
GAGAGCACCTTCGGGAGCTCTGCCGTGGATGGGACCGCGTCGAGTTCCTG
GACTACCAGTCCGAGACGGGCCGATGGACGTTTAAGGTCAGCCACTTTAG
CAAGTACGGGGTGGAGGACGAAGACGATGAGGAGGAGGGGGGCACAACGG
GGCATGAGTTGCGGAAGGGAAAGGGGGGAGATGAGGCAGACGGCGACGGA
CGTGTGGGGCAGAAAATGGCGCAAGAGACGGCCTCCGGCCTCGGTACTGG
AGATTCCGGCGCGCGGACCGGCGGGTATGGAATCCCTGACTCGGACGAGG
ACGATAAAAGCGTCACCGCGGAGGAAGTCGAGCTCGTTGAGGATGGCTTT
GAAGACGAAGGTAACGAAGTGGAAGGCGTGCTGTCAGAGGAGGAGCGGGG
GGAGGAGGAAGTCATGGAGATGCCTCCTGTGGGGGGGCGTGCACCGCCGT
TGTACGGTCTGGAGGCAAGTCGTATCAAGACTCTGGTTGGAATATTCGGG
GTGGAGGAGGAGGATGACACGGAGGGGACGGAGGCTTACGGGCGGCGGGC
GCGCGCCGAGTCCGAGGAGCGGCCCTTGTCCAGCCTGGAGGACGACGGGG
GATTTGGCCGGAGGGACCTTTTTTCATTCTCAGAGGGTCGCAACGACGGC
GTGTTGATGGTTGAGGACTCGGTGGAGGAGCGCGCCATTGCAATGGCCCC
ATCGCTTCCATCTGCGCGAGCGGTGTCCCGCGTCGCCCCCGCCCCGAGCG
CCAGCCCTGCCTTGGGCTTCGTGGCCCCCTCCCTGATGCGCGGATGCGGT
GCAGTGAAAACATCGCCGACGGACGATACTCTGCTCGCTGTGGCGACGGG
GAGGCGCGCTCGCGAAAGGGCTGGCGAGGAGGGGGGCACGGGCCGGAAGC
CGGTCGATTACTCTGCCTTTATGGGCCGCTCTTTCCGCGTGGGGTGGGGG
CCGGACGGGTCTTTGGCCGCGCCCTTTGTGGGCCGCGTGGTGCGCCCAGG
GATGGCGGCCAAGGTAGAGGCGCAGGTACTCGTAAAATCTCTGGCGGTGA
CGCCCGAGGAAGCAGGGACGAAAGGAGGGGTGGAAGGGCTAAGGGGCTAC
TTGGGCCCATTGGGTGTGCACAAGGCATTCGCCCGAGGCGTGGAGCCGGC
GTCCGAGACGCGCGCCCCCCGAGCGGGGTTCCGTGCCGGGGGATCGCCAG
CGACGGGGGATGTGGACGTGGGCCTCTACCATCACATGGTCGACTGCCTA
CACGCACTTGCCACGGAGGCGACTCGTCGCGAAGACGACGCAAGCCGGCA
GACCTGGGAGCTGTTCAACGCCTTGTGGGGGCAGGAGGGAGGTGGAAAGG
CGCGACCGTTGCCTCTTTCAGGCTCCCTAGGGGCCCTGTGTCAGGTGCTG
CTCCCGGACGGGGCGAGTCACAACGACTGGGAGCGACGCTGCCAGGCGGT
CTGCCGGTGGCTGAAACGGATCGTCCGGCGTGAGGTGGAGGACCTGCCCG
TGCGAGGCTCAGGCGACGAGAGCGCGGACTTGCGAGCCGTTCTCGACCTG
ATGAAGAGTCATCGCATCACCGATGCCGCTAGTCTGGCGTCCAAGTCGGG
CTTCCTCCGCCTGGCAACACTCATCCCCTTGGCAGGGCACAAGCCTGCCA
CTGACTACCTGCGGCAACAGCCTGCCTTGCGGCGTACCGTTCAGGATCCT
GCACTGGCGGCCATCTATGGACTGCTGAGTGGGACGGGCAGCGAGGCAAA
CGAGACGAGCGACGAGGGGCCGAAGGCCGGACTGGATTGGATGCGGCGCC
TGGGGGAGTATATGTGGTTTAAAACTGACGGACGCTCTCCGGGGGCCGGC
AGTGCGGGGGCTGGAGACGACGACACGGACCGCCTCATCTTGGCGATCGA
GGCGTTTGATGATGAGATGCCCTCTCCCCCCTTGCCTGCGTGGTTGCGAG
CGAGGTGGGAGAGAGGGCGGGGCCGGGCGTGGCATGACGCCCGTGTGGGA
CCGAACTCTCTCTTCTACGACCTCCTGCAGATGTATCGCTCCGAAGCTTA
TCCCCTATCCTTGGTGCTTGATCCGCGCGGCTTGACCGAGAATGAGCGGG
ACTACCGGCTCTCGTGGCTGATGCTCACCCTTTTGGGTGCCTTGAGTATT
GGCCACCCCACAGGACCGGAGGCTGTGGAGGCGGCGACGCAGATTTGGAT
GCGGGTCACGTCAAGCCTCGTGTTCCAACTCGTGGGGATGGGTCTCTGGC
CGTGGGCAGTTTACGTCCTCTTGCACGCCCCAGAGACGCCTGCTCGCACA
GACGCCGTCAAGGATCTGGTTGGCCGTTTCGGATGGGCCTTTCAACCAGG
GAGCACTGACTGGAGCTTCCTGGTCGACGAGTTGGGGGTCCCGGCCGCCT
GGCTGGAAGACGCACGAGCCACCTATTTGAGGGCGCAGGGCGTGCTCTTC
CTAGACGAGGGGAAAGGTGCCTCGGCGGACGACGCGCTGGGGCACTTCCT
GCGCGCGGGCGACACAAAAGCGGCGGCGGAACTTATCATGAACGTTGTTG
CCCCCCGCCTATTGATTGACGACCGCGGTCCCGAGCTCCACGCGCTGCTG
GCAGGCTTTCTGGGGCCCGAGCGGGGAGAGCTCACAGATGCGACCATCAA
CAGCGGGAATAAGGCCTGCTGGGCGTACTTGGAGGTCTTGGAGGCTCTTC
GTCACCTTGAGGACTCTTGGGGAGAGAAAGAGGCACCAGCGCCCGCTCAC
TTCGAAGAGCAATTGATGGCGATCCTGCCGAGCTTGGTAGACGGTGGTCA
AGGCGGCGATCGAAATGGCTGTTTCAACTGGTGCGCAGAGCGACTGGATC
CCGGAGAAGCGGGACGGGTGATTGATATGTATGCGCAGCGGGGGAGCCGA
AGTGCACCTGACTCAATGCCTCCGCCTCTGCATGCAATTCGGAATATGGT
ACTGACGGACGTGATTAAGAAACTGTTTTTCTTCCATCGTCTGCAGGCCA
GGGAGAGGAGCATGTGGGAGGAAGGGATGGCGCCGCGGAGCTGCCTGCCT
GGCAAGTCTCAGTTATGCCGACTGGAGGACATGTGCCAGGATTACGCACT
CCAACAGGTGGGGTGCCTGACAAGCGACTTCATCGCCAGGCGACTCGATG
GGGATGAGGTGTTTTAG

Synonyms

Publications