rna2972, rna2972 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2972
Unique Name	rna2972
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3111
Alignment location	CM002460.1:389450..392223 +

Link to JBrowse

Properties


Property Name	Value
Product	dna-damage-inducible protein f
Orig transcript id	gnl\|cribi\|Naga_100034g7.6293.mrna
Orig protein id	gnl\|cribi\|Naga_100034g7.6293
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:389450..392223 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100034g7	gene2852	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2972	rna2972-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27720.1	cds2964	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:389450..392223+
coding sequence from alignment at CM002460.1:389450..392223+

mRNA sequence

>rna2972 ID=rna2972|Name=rna2972|organism=Nannochloropsis gaditana|type=mRNA|length=3111bp
GCAGATTGTTGTACCCACCATGTCGTTCTTTGCAACCTGATAACACCATG
TGAGGGGAGTCAGATTAAGGTGTGGTCGAAGACTTGCTCCCCACCACGTA
GCAGCTCTATTTTCCAGGAGACAACACAGCTCGATAGACCCTCCTGCACG
TTCTAATGCGCGGGGTCTACTTGATCCTCTCTCCCCCTTCCTCGCTAACC
CGGCGGCGACGGGGGCACATCACAGCCCTAAATACCACCGAGACAGCTGC
GATAGCTCTCCATAAGTCACACTTACTGTTGACGCGCCGGACAGGTGCAT
GTTTTCCCCACATGATACAGGGCTGGCGTGACTGGAAGACGATCGGTATC
TGGGGATTAAACGACGAACCAACCTGCCACCCTGGTACCGCGTAGATAAC
CCAGGCGGCGCTATAGAGGAACGAAGCCATCTGAAGGCACATATACTGGA
TTGTACCACCGGAAAATAATGATAGAGCATCTTAAACTTGTACAGAGTCA
CTTCAAGATGTTTCAGGCACAAACGGTGGCTTATCATGGACTCTTGGACA
TGCAAAGCTTCTTGCAGAACAAGCACCAGCAGGGAACATGCGGTCGTTCG
CCTTTGAGTACAGAATATAAGCTACGCCTTCTAGAGTTTGAGCTAGCTGA
GCGAGAAGATACATTGCGAAAAGACACTTTCAAAACAAATTTGCTTTCAT
GCGTTGACAAGGATGGATGTCTGATGGACTTGGCAACAGTAGTTCAGCCG
TACCTACAACTTCTGATCAAGTCAGTGTCCCGTCGGTGTTGGAGAGAGCA
GGCCTTGCTGGTCTTGATCTTACGGCGTACAGGTCTTGCTTTGAAGAAGA
GACGGAAGTACTCCTTGGTTCTGGAAAAGTTGGTTCGCTGGGGAGGCCTC
GAAGTTCTCAAAGCCGTCGTGAACGGATGCCTCCAGCACCAGCAGCACTC
TCAGGAGCGAGCGAACAGGAATGCGCCGTTGGGAGATCCAGGAACGCTAT
CTAAAGAAGTAGTTGAAAGAGCGGTGTCAGAGCTATTGGTTGCCACCTTA
AAAGCACTAGTCCTCCTTCCCGTCGACATCGAGGCTGTGAAAGACTCCAA
CATGGCGCGTTTCCTGTCGACAGTCTCGCAAGCCTTTGCGGCTGCGCCCG
ACTCATCGGAAACCTGCAAGGAGATTCACCATCATAATGTTGTTGTACCT
CGCTTGGTCCAGATAGTGACCAACAAATGGGCGGAGTTCTCTCGAAGTAC
CACCCAGAGGCGACGCGAAGTCAAGACCCTCACCACCGCAGCAGCACGCC
CCCCCCCAACATTAGCATCACCTGTAGCAGCGGCTGCGGGAGAGCAAACA
AGGATCGGAGAAGGGCCATCTCCAGCCTTGGTTGAGTTGAGTAGCAAAGT
GTCGGGCGGGCAGATTCAAGAAGGCGCCGAGGAGACGCTCGGGAAGCGGC
CACGCCAAGCATCGGCGGAGGAAGCGGAGGTGGCCCGGGCGCGGCGCGTG
GATCTGCGCAAAAGGGGTCGAGGTGGTGGAATACAAGTTGTCCCTTCAAG
CGCGATGGCAAGTGCGCCGGCGCCAGTTGAGGTGGAGCGTGAGAGCGGGC
CTTCTGCGTCGGCTCCACCCCACCCCGACACCCCGCCCAGTAAAGCCACA
CCTATCACAGAAGCTGCACCTCCGGGGGGGTCCACGAACGACGCTCCATC
CAGTAAGCGCAGGAGAAGCGTGCGGTGGAGGGACGAGCACGGTGATGGGC
AGCTTCGAGAAGTGTTCGTGTTCGAGAAAGAGGCTGGTGAGGAGGACGCC
CCGGCCTCCGCCTCCGGAGGAAGGTCTTGGACCGAGCTAGCCAAGCGAGA
GCACCTGAACGAGCGAGCTGCCTTGCAGAAGACGGGTGGCATGTCGGGAA
AGGGGGACGATGGGAGTCTCAAAAAGGAGGGACTGGATGCCCCTCGGAAA
AGCAGCGATTCTCCATCAAGAACAGTACCCTGGCACCTCCCCCCCCGACT
GGCCGTTTCGGATCCCCCCCCTGAGCTTGAATCCACGGAAGTCTTCGACG
AAACGGCGAGAACTCGGGTCTTAATCGAGCGGCAGTATCTACACGAAGAC
GAAATTCCCTACACACCGCACGAGGACAAGTCCGCTGTTGCCAGGGCCTC
GCCAGGCGCGCCACCCGCGCCCATCCTCGAGGTGATCCCGTGGGCCGGCG
GGGCAGTGGAGGAAAAGAGGCAAAAGCTGGCTGCACCAGCTCCTCCGGCA
CAAAGTTCGCTGCCGGCATTCTCGCTTCCGCCTCCTGTGGTGCACCAAGG
GCCGCATCAGGCGCCTCCCTCGCACGGCCTTCTGTCGGCGGCCCCGAAGT
CGAGTGCGAGCCTGCTTGACAACCTCCTTCAGGGCGTTCGCCAGGGAGCC
ACCCCCGACGTCCTAGGTGCCTTCCTGTCCCAACCGCCATCGTCAGCCAC
ACCGGGGCCCCTACCACACTGGACACAGCAGCAACCACAACCCCAACGCC
TGCCGCCTCCGCTCGCACCGGCGGGATACCAGCAACCAAGTCACCAGGGT
CAGCCCTCGGCCCAGCTCTTGGCGAGCCTCCTATTGGGCAGTGCACAGGG
CGGGGGTTGGGCACCGCCATCGCGTTCAGCCAATGCAACATCGCTCTTGG
GCCCTTCTTCATACGAGCCCACCATTCCGCAGGGCCACAATTACGAACAG
GGGCAAGACCAGAACCATAGGCCATAATAGAAGGATCAGGTACGTTTGAA
CGGAGAAAGAAAATAAAAATGAGTGCGAAACTGCTTGCTTTTGTTGTTTT
GGATGCATTTTTTACGTAAACATCTTTCATCAGATTTTTCAAGGATTGGC
AAGCCTAGTTCAATCCCTCTACATGAGTGAGCGTGTGGATGCGGTACTTC
TCTGCTGTCTCCTCGCGGCACTCGGGCTCGGTTTGCATTCCGGCTTCTTC
CCTTTCTTCCCTCTTTATCGCTAGCATAAGGTCTGCTCTCAAATCATTAC
AAGCTATCATTCTAGACAATCAATCCGAATGCCTTACAAGCCATTGGAAA
TTTACATAAAACGCCGATTCTACGATTAAGATTAAAATTAAAAAAAGGGC
GTCAATTCACC

protein sequence of rna2972

>rna2972-protein ID=rna2972-protein|Name=rna2972|organism=Nannochloropsis gaditana|type=polypeptide|length=852bp
MVLSGCKERHGGYNNLRKLSLRRHQHCSPSSSAQVTPPIGSDSIAFMKAL
SCFRLVLGLVAVNAFRFTYKTRVAKAKGSRMPVFSFNEKSTPGTTLGTES
DRPRAQGSSGVLRLKKLLQRRLLFVVETLGGIDRAALYLTRRDLAGDGLE
LFPAAVFPAAEDDWMIGHVGAIQPKKKLYRNGNGATPPTFFLASGELAVR
ICYGAQLIAVLVVDDEEHRKTRMKPTGDARGETGLQRSAVRMHRIEEVAT
RVFAAALKDTLVIDQRALALNSSSSTFVRTEVLPFIGTVPDASEGLLSGK
PADASSSNGSEAEQADEAAAEAGAWAVNAEASTSSLLSSDVTVSVGGATN
ITFDLHLLEDFKHIFDDIQLSGLRLENNTNLFILQVAAPVVAALALEPLI
SLVDTYYIGHFLGSVSLSAYGISERVFVFSLYILNFLATSTTPIVANLRA
QGEEEAARELVGRLLFFAGMFGLALIPILQALSYPLINLLGAVPENYAEA
VEYFQVRSWGTPALMLVAVSNGALRGYLDTTTPLIVAAIAFIVDYSVDPE
VVYPADPKGLGAAGAATVIAEWLSAGLFLTKFVSMKPPILPVLDLFPPWA
EMAPVVKASAQIFIRTVLLQALLATSCIAAARIGPLDIAAHQVALQLWIP
PSFLTEAFSIAAQGLVADALGRGDRLRGRELSLLLLKWGVALGGVLAVFC
ATAQILQPDVLPRFFTEDQGILDKVHPIVWLIAIMQPINGLVNVGGGVLQ
GAQDFTYQVVTMGLSALFAGSLFFLLRDEGLTAVWETLLAFQVMRAVLFA
YRFVEPMGPLSIVSESKTQKILAGSLFRGWDHDKHVPKKKKKKRRRPWFN
DM

mRNA from alignment at CM002460.1:389450..392223+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2972 ID=rna2972|Name=rna2972|organism=Nannochloropsis gaditana|type=mRNA|length=2774bp|location=Sequence derived from alignment at CM002460.1:389450..392223+ (Nannochloropsis gaditana)
CCGCGCATTAGAACGTGCAGGAGGGTCTATCGAGCTGTGTTGTCTCCTGG
AAAATAGAGCTGCTACGTGGTGGGGAGCAAGTCTTCGACCACACCTTAAT
CTGACTCCCCTCACATGGTGTTATCAGGTTGCAAAGAACGACATGGTGGG
TACAACAATCTGCGCAAGCTGAGCCTACGCCGACATCAGCACTGTTCTCC
ATCAAGCAGTGCGCAGGTTACACCACCAATTGGCAGTGATTCCATTGCCT
TTATGAAGGCGCTCTCATGTTTTCGGCTAGTGCTGGGATTGGTGGCGGTG
AACGCGTTTCGCTTCACTTACAAGACACGTGTGGCCAAAGCGAAAGGGAG
TCGCATGCCCGTCTTCTCGTTCAACGAGAAATCTACTCCAGGGACCACCC
TTGGCACCGAGAGCGACAGACCAAGGGCGCAAGGGAGTAGCGGCGTGCTT
CGGCTAAAAAAATTGCTACAACGGCGGCTCCTGTTTGTGGTCGAGACCTT
GGGGGGCATAGACCGCGCAGCACTCTATTTAACGCGGCGGGACTTAGCCG
GGGACGGATTAGAGCTCTTTCCAGCGGCGGTCTTCCCCGCAGCTGAGGAT
GACTGGATGATAGGTCATGTGGGCGCCATCCAACCGAAGAAAAAACTCTA
CCGGAACGGAAACGGCGCCACTCcgcccaccttcttcctggcCTCAGGCG
AGTTGGCTGTTCGCATTTGCTACGGAGCGCAGCTCATCGCCGTGCTGGTT
GTGGACGATGAGGAGCACCGCAAGACGAGGATGAAACCGACGGGGGACGC
GAGGGGCGAAACTGGGCTCCAGCGTTCGGCTGTGCGCATGCACCGcatcg
aggaggtggccacGCGCGTTTTCGCCGCCGCCCTGAAGGACACCCTTGTG
ATCGATCAGCGAGCACTCGCGCTCAattcgtcctcgtccacattTGTGCG
CACGGAGGTACTGCCCTTTATCGGGACCGTGCCCGATGCGTCGGAGGGGC
TCCTGTCTGGGAAGCCTGCGGATGCTTCATCGAGCAACGGGAGCGAGGCC
GAGCAGGCCGatgaggcggcggccgaggcgggCGCATGGGCGGTAAATGC
GGAGGCATCGACGTCCTCTCTCCTGTCCTCGGACGTGACCGTCTCGGTGG
GCGGCGCGACAAACATCACGTTTGATCTGCACCTGCTGGAGGACTTCAAG
CACATTTTCGACGATATTCAGCTCAGCGGGCTCCGGCTTGAGAACAACAC
GAAtcttttcatcctccagGTGGCCGCTCCTGTGGTGGCTGCATTGGCCC
TGGagcccctcatctccctggTTGACACCTATTACATCGGACACTTCCTG
GGTTCCGTGTCCCTGTCGGCCTACGGCATCTCCGAGAGGGTCTTCGTCTT
CAGCCTTTACATCCTCAATTTCCTGGCTACTTCCACAACCCCGATAGTGG
CCAATCTCCGagcgcagggagaggaagaggcggcccGGGAGCTGGTGGGC
CGCTTGCTTTTCTTCGCGGGCATGTTCGGCCTGGCCCTGATCCCCATCCT
CCAGGCACTCTCGTATCCACTCATCAACCTGCTCGGTGCCGTTCCCGAGA
ACTACGCCGAGGCAGTCGAGTATTTCCAAGTGCGGAGCTGGGGAACACCC
GCGCTCATGCTGGTGGCGGTCTCGAACGGGGCGCTCCGGGGGTACCTGGA
TACGACTACTCCGCTCATCGTggccgccatcgccttcatAGTGGACTACT
CCGTCGACCCCGAAGTCGTGTACCCTGCCGATCCCAAGGGCTTGGGTGCC
GCAGGAGCCGCGACGGTCATCGCCGAGTGGCTATCTGCGGGATTGTTCCT
GACCAAGTTTGTGAGTATGAAGCCGCCTAttctccccgtcctggacctct
tcccgccctgggcAGAGATGGCACCCGTTGTCAAGGCCTCGGCGCAAATC
TTTATTCGCACCGTCCTTCTTCAAGCCCTTTTGGCCACGTCCTGCATCGC
TGCCGCACGCATCGGGCCCTTGGACATCGCCGCTCACCAAGTGGCGCTCC
AGCTCTGGATACCGCCGTCTTTCCTGACggaggccttttccatcgCTGCG
CAGGGCCTGGTGGCCGATGCCCTGGGTCGCGGCGACCGACTGCGAGGACG
GGAATTGAGCTTACTTTTGCTAAAGTGGGGCGTTGCGCTGGGGGGGGTAT
TGGCTGTATTCTGTGCGACGGCGCAGATTCTCCAACCTGACGTgcttcct
cgcttcttcACCGAGGATCAGGGCATACTTGACAAAGTGCACCCGATTGT
TTGGCTCATCGCAATCATGCAGCCCATCAATGGCCTCGTCAACGTGGGTG
GTGGCGTGCTACAAGGTGCGCAGGACTTCACGTACCAGGTTGTAACCATG
GGTCTGAGCGCACTTTTTGCTGGCTCgctgttcttcctcctgcgggACGA
GGGATTGACAGCTGTATGGGAGACGCTCCTAGCGTTTCAAGTCATGCGTG
CCGTACTCTTTGCGTACCGATTTGTTGAGCCCATGGGGCCGCTCAGTATT
GTGTCCGAGTCAAAGACCCAAAAAATTCTGGCAGGATCCCTTTTCAGGGG
ATGGGATCACGACAAACATGTgccgaagaaaaaaaagaagaagaggcggc
ggccttggtttAACGATATGTAAAGTAAGTAGGGAAAGCCCAAAGCAAGT
GAGAGCAACGTGAGAGCTCTGTCTTTAAGATGCTCTGTACAAAACAAAAG
AAACTTACAGTTGTAGAAGACGAG

Coding sequence (CDS) from alignment at CM002460.1:389450..392223+

>rna2972 ID=rna2972|Name=rna2972|organism=Nannochloropsis gaditana|type=CDS|length=2559bp|location=Sequence derived from alignment at CM002460.1:389450..392223+ (Nannochloropsis gaditana)
ATGGTGTTATCAGGTTGCAAAGAACGACATGGTGGGTACAACAATCTGCG
CAAGCTGAGCCTACGCCGACATCAGCACTGTTCTCCATCAAGCAGTGCGC
AGGTTACACCACCAATTGGCAGTGATTCCATTGCCTTTATGAAGGCGCTC
TCATGTTTTCGGCTAGTGCTGGGATTGGTGGCGGTGAACGCGTTTCGCTT
CACTTACAAGACACGTGTGGCCAAAGCGAAAGGGAGTCGCATGCCCGTCT
TCTCGTTCAACGAGAAATCTACTCCAGGGACCACCCTTGGCACCGAGAGC
GACAGACCAAGGGCGCAAGGGAGTAGCGGCGTGCTTCGGCTAAAAAAATT
GCTACAACGGCGGCTCCTGTTTGTGGTCGAGACCTTGGGGGGCATAGACC
GCGCAGCACTCTATTTAACGCGGCGGGACTTAGCCGGGGACGGATTAGAG
CTCTTTCCAGCGGCGGTCTTCCCCGCAGCTGAGGATGACTGGATGATAGG
TCATGTGGGCGCCATCCAACCGAAGAAAAAACTCTACCGGAACGGAAACG
GCGCCACTCcgcccaccttcttcctggcCTCAGGCGAGTTGGCTGTTCGC
ATTTGCTACGGAGCGCAGCTCATCGCCGTGCTGGTTGTGGACGATGAGGA
GCACCGCAAGACGAGGATGAAACCGACGGGGGACGCGAGGGGCGAAACTG
GGCTCCAGCGTTCGGCTGTGCGCATGCACCGcatcgaggaggtggccacG
CGCGTTTTCGCCGCCGCCCTGAAGGACACCCTTGTGATCGATCAGCGAGC
ACTCGCGCTCAattcgtcctcgtccacattTGTGCGCACGGAGGTACTGC
CCTTTATCGGGACCGTGCCCGATGCGTCGGAGGGGCTCCTGTCTGGGAAG
CCTGCGGATGCTTCATCGAGCAACGGGAGCGAGGCCGAGCAGGCCGatga
ggcggcggccgaggcgggCGCATGGGCGGTAAATGCGGAGGCATCGACGT
CCTCTCTCCTGTCCTCGGACGTGACCGTCTCGGTGGGCGGCGCGACAAAC
ATCACGTTTGATCTGCACCTGCTGGAGGACTTCAAGCACATTTTCGACGA
TATTCAGCTCAGCGGGCTCCGGCTTGAGAACAACACGAAtcttttcatcc
tccagGTGGCCGCTCCTGTGGTGGCTGCATTGGCCCTGGagcccctcatc
tccctggTTGACACCTATTACATCGGACACTTCCTGGGTTCCGTGTCCCT
GTCGGCCTACGGCATCTCCGAGAGGGTCTTCGTCTTCAGCCTTTACATCC
TCAATTTCCTGGCTACTTCCACAACCCCGATAGTGGCCAATCTCCGagcg
cagggagaggaagaggcggcccGGGAGCTGGTGGGCCGCTTGCTTTTCTT
CGCGGGCATGTTCGGCCTGGCCCTGATCCCCATCCTCCAGGCACTCTCGT
ATCCACTCATCAACCTGCTCGGTGCCGTTCCCGAGAACTACGCCGAGGCA
GTCGAGTATTTCCAAGTGCGGAGCTGGGGAACACCCGCGCTCATGCTGGT
GGCGGTCTCGAACGGGGCGCTCCGGGGGTACCTGGATACGACTACTCCGC
TCATCGTggccgccatcgccttcatAGTGGACTACTCCGTCGACCCCGAA
GTCGTGTACCCTGCCGATCCCAAGGGCTTGGGTGCCGCAGGAGCCGCGAC
GGTCATCGCCGAGTGGCTATCTGCGGGATTGTTCCTGACCAAGTTTGTGA
GTATGAAGCCGCCTAttctccccgtcctggacctcttcccgccctgggcA
GAGATGGCACCCGTTGTCAAGGCCTCGGCGCAAATCTTTATTCGCACCGT
CCTTCTTCAAGCCCTTTTGGCCACGTCCTGCATCGCTGCCGCACGCATCG
GGCCCTTGGACATCGCCGCTCACCAAGTGGCGCTCCAGCTCTGGATACCG
CCGTCTTTCCTGACggaggccttttccatcgCTGCGCAGGGCCTGGTGGC
CGATGCCCTGGGTCGCGGCGACCGACTGCGAGGACGGGAATTGAGCTTAC
TTTTGCTAAAGTGGGGCGTTGCGCTGGGGGGGGTATTGGCTGTATTCTGT
GCGACGGCGCAGATTCTCCAACCTGACGTgcttcctcgcttcttcACCGA
GGATCAGGGCATACTTGACAAAGTGCACCCGATTGTTTGGCTCATCGCAA
TCATGCAGCCCATCAATGGCCTCGTCAACGTGGGTGGTGGCGTGCTACAA
GGTGCGCAGGACTTCACGTACCAGGTTGTAACCATGGGTCTGAGCGCACT
TTTTGCTGGCTCgctgttcttcctcctgcgggACGAGGGATTGACAGCTG
TATGGGAGACGCTCCTAGCGTTTCAAGTCATGCGTGCCGTACTCTTTGCG
TACCGATTTGTTGAGCCCATGGGGCCGCTCAGTATTGTGTCCGAGTCAAA
GACCCAAAAAATTCTGGCAGGATCCCTTTTCAGGGGATGGGATCACGACA
AACATGTgccgaagaaaaaaaagaagaagaggcggcggccttggtttAAC
GATATGTAA

Synonyms

Publications