rna297, rna297 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna297
Unique Name	rna297
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1116
Alignment location	CM002455.1:736253..737502 +

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Properties


Property Name	Value
Product	Golgi apparatus membrane protein TVP15
Orig transcript id	gnl\|cribi\|Naga_100026g18.10669.mrna
Orig protein id	gnl\|cribi\|Naga_100026g18.10669
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:736253..737502 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100026g18	gene286	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna297	rna297-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30415.1	cds297	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:736253..737502+
coding sequence from alignment at CM002455.1:736253..737502+

mRNA sequence

>rna297 ID=rna297|Name=rna297|organism=Nannochloropsis gaditana|type=mRNA|length=1116bp
TTTGGTCCCCCAAGGTACCTTTCAAGCGGTGCACCAGCTCGACCAAATCC
TCGTGGACGGCCCGCAGGGTCGTCTTCCCCGTCATGCCTCGAGTCGCGGC
ACTGCCGGATGAACAAGCTGAGCCCCAGGCCTCCAGGCGGATGACGGTGA
GATGACGGCGAAGAGCAGGGACAGTATCCTGCTTTATTGAGTGTGATTGG
AACGAAACAGACATTGGTCATGAGTTCTCTCTCCAGGAAAGTGTGAAGGA
GTCGCTGGCGAGGGGTGCTGCGAGGGGCGGAAAAGACCTTGACGTGGGTG
GCAGAAGTGGCAAAACTCCGTGACACACCCCAGACGGTCCGGACTCTCAA
ATTCGAAGGTCACTGAGTGGTGTCAGTCACTGACTGACGATGCATCACAG
TATTTAGACAAGAAACAGGGACGAGCCCGTGATAGGATGCCACAGACGTT
CTGGAGCCGCCTGTGGGACAAGACCAAGAAGGACCCCCTGATCCCTATAG
GGTGCACGGCCACGCTGGGGTGCTTGGGCGCGGGGCTGTACGCTTTCAAG
AGCGGCGAGGTAAGGGATGCACGACCGGGGAATCAATTTAAGGCAGGATT
TGAGCTCTTATGGCTTGTGAAGCGGCAACGCAGCGGATGCGCACCAGATC
GGAGTAGGCAAACACATTCATCATTTCCGGCAGGAAAAACTATTTGGCGC
CCGAGATGTACACGTATTCACATTGTATTGATTCCAACACAGAAACATTT
GTCGCAGCGCATGATGCGGGCCCGTGTCCTTGCTCAAGGCTTCACGATTG
TGGTTTTGATGGCGGGATCCTTCTACAACATGAATATAAAATCAAGCGGA
GAGCCAGCCCGGGAGAGGTAGGCGAAGCGATAGTTCGTAATCAGCGACTT
CAGTGCAAATTAGGGACTTCATATCCTGGGCACAACAAAAAGATCGCTGG
CAAAGCGATGTAATGTATTTGAGTTGTGTGAAAGCTGGCTTTAATACGTA
TAAATGAGCAGGTTCAACAAGAGAGGATTTGAAGGTTGTCCGATGCCGCG
TTCCTGGTAGTCTGTACAGGGCAACTCGAACGACCCAAAGGAAGACACCA
CAAGGCACATTTTGAT

protein sequence of rna297

>rna297-protein ID=rna297-protein|Name=rna297|organism=Nannochloropsis gaditana|type=polypeptide|length=271bp
MSGSGEVNPFATQSGGDGGPGAGRNRPPSPPRADEPAWLNANAASPPSPA
APHSSHVPIQPATLQPQAATQPQPPSGQTPPLVIYMRVANFALCILMSAA
AVLTVIVPAGATPASWVLAFYVLAFSCLLCCFEVNLRRVAKHIANNFGFL
YDAKSRATFLIFVGVLCFSLGITGKVAGAAMIANALFNTVVLCKYPQYAT
NAPTTTAEQEAAQFMQRNPGLARKGARGPHRRSSLSRCKSVKEPEKKRHT
ATDVSRSGTVQFSFALLNQVL

mRNA from alignment at CM002455.1:736253..737502+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna297 ID=rna297|Name=rna297|organism=Nannochloropsis gaditana|type=mRNA|length=1250bp|location=Sequence derived from alignment at CM002455.1:736253..737502+ (Nannochloropsis gaditana)
ATGAGCGGCAGCGGAGAAGTAAATCCCTTCGCTACGCAGGTAAGGCACAC
TTTGCGACtgagcttcctccgccgagtAATTCGTCAGGTCAGGAGGAGAT
GCACGAAATGCACCCCGCTTATCTCGTCGCGCATGTTTTCTTCCATCAGA
gcggaggtgacggaggaccTGGCGCAGGCAGGAACAGGCCGCCATCTCCA
CCGCGAGCGGATGAGCCCGCATGGTTGAACGCCAatgccgcctctccccc
gtcgCCCGCCGCCCCGCACTCCTCGCACGTGCCTATACAGCCCGCCACAC
TCCAGCCTCAAGCCGCGACCCAACCGCAGCCTCCAAGCGGACAAACTCCC
CCTTTAGTGATTTACATGCGCGTGGCAAATTTTGCGCTTTGTATCCTCAT
GTCTGCGGCTGCCGTGTTGACGGTCATAGTTCCTGCCGGGGCCACGCCTG
CCTCGTGGGTGCTTGCCTTTTACGTTCTGTAAGTGGCCTCTCCTAGCTTG
TGCGAGTGAGCCTGTGACATACCCGAGAAAACCGAAATTTACGCCTTGCG
TGGTTCATAGTTCTCATCCATTCGCTCACCCCCATTGCCTCTCTTTGAAT
CTGCCGCCGACACATTTTCCCCAACGACTTCATTGCACGATGTCCCTCAC
TCTCATATCAATGACTATTTTTCTTCACGCCCTTTAGCGCTTTTTCTTGC
CTGTTGTGCTGCTTTGAGGTCAATTTGCGTAGGGTGGCGAAGCACATTGC
CAACAACTTTGGCTTCCTCTACGACGCCAAAAGCCGGGCCactttcctca
tcttcgtcgGCGTCCTCTGTTTTTCCCTCGGGATCACCGGAAAGGTTGCG
GGTGCTGCCATGATAGCCAACGCGCTCTTTAACACCGTCGTCCTGTGTAA
GTACCCTCAGTACGCCACCAACGCCCCAACCACCACGGCTGAGCAAGAAG
CCGCGCAATTTATGCAGCGCAACCCCGGATTGGCACGGAAAGTAGGCGGC
GCCATGATGAATGCGGCGGGAAGCCAGCCCGCGGCACAGGGCGGttctgg
tggaggagggacgggggggagctCGTGGATTTGAGACAGTGTGCTGGGGT
GACTAGGGGGCCAGAGGGCCGCACAGGCGGTCGTCTCTCAGTCGGTGTAA
AAGTGTCAAGGAaccggagaagaagagacacACCGCTACTGATGTCAGTC
GGTCTGGTACAGTCCAATTTTCTTTCGCCTTACTTAATCAGGTCTTGTGA

Coding sequence (CDS) from alignment at CM002455.1:736253..737502+

>rna297 ID=rna297|Name=rna297|organism=Nannochloropsis gaditana|type=CDS|length=3264bp|location=Sequence derived from alignment at CM002455.1:736253..737502+ (Nannochloropsis gaditana)
ATGAGCGGCAGCGGAGAAGTAAATCCCTTCGCTACGCAGAgcggaggtga
cggaggaccTGGCGCAGGCAGGAACAGGCCGCCATCTCCACCGCGAGCGG
ATGAGCCCGCATGGTTGAACGCCAatgccgcctctcccccgtcgCCCGCC
GCCCCGCACTCCTCGCACGTGCCTATACAGCCCGCCACACTCCAGCCTCA
AGCCGCGACCCAACCGCAGCCTCCAAGCGGACAAACTCCCCCTTTAGTGA
TTTACATGCGCGTGGCAAATTTTGCGCTTTGTATCCTCATGTCTGCGGCT
GCCGTGTTGACGGTCATAGTTCCTGCCGGGGCCACGCCTGCCTCGTGGGT
GCTTGCCTTTTACGTTCTCGCTTTTTCTTGCCTGTTGTGCTGCTTTGAGG
TCAATTTGCGTAGGGTGGCGAAGCACATTGCCAACAACTTTGGCTTCCTC
TACGACGCCAAAAGCCGGGCCactttcctcatcttcgtcgGCGTCCTCTG
TTTTTCCCTCGGGATCACCGGAAAGGTTGCGGGTGCTGCCATGATAGCCA
ACGCGCTCTTTAACACCGTCGTCCTGTGTAAGTACCCTCAGTACGCCACC
AACGCCCCAACCACCACGGCTGAGCAAGAAGCCGCGCAATTTATGCAGCG
CAACCCCGGATTGGCACGGAAAGGGGCCAGAGGGCCGCACAGGCGGTCGT
CTCTCAGTCGGTGTAAAAGTGTCAAGGAaccggagaagaagagacacACC
GCTACTGATGTCAGTCGGTCTGGTACAGTCCAATTTTCTTTCGCCTTACT
TAATCAGGTCTTGTGAATGAGCGGCAGCGGAGAAGTAAATCCCTTCGCTA
CGCAGAgcggaggtgacggaggaccTGGCGCAGGCAGGAACAGGCCGCCA
TCTCCACCGCGAGCGGATGAGCCCGCATGGTTGAACGCCAatgccgcctc
tcccccgtcgCCCGCCGCCCCGCACTCCTCGCACGTGCCTATACAGCCCG
CCACACTCCAGCCTCAAGCCGCGACCCAACCGCAGCCTCCAAGCGGACAA
ACTCCCCCTTTAGTGATTTACATGCGCGTGGCAAATTTTGCGCTTTGTAT
CCTCATGTCTGCGGCTGCCGTGTTGACGGTCATAGTTCCTGCCGGGGCCA
CGCCTGCCTCGTGGGTGCTTGCCTTTTACGTTCTCGCTTTTTCTTGCCTG
TTGTGCTGCTTTGAGGTCAATTTGCGTAGGGTGGCGAAGCACATTGCCAA
CAACTTTGGCTTCCTCTACGACGCCAAAAGCCGGGCCactttcctcatct
tcgtcgGCGTCCTCTGTTTTTCCCTCGGGATCACCGGAAAGGTTGCGGGT
GCTGCCATGATAGCCAACGCGCTCTTTAACACCGTCGTCCTGTGTAAGTA
CCCTCAGTACGCCACCAACGCCCCAACCACCACGGCTGAGCAAGAAGCCG
CGCAATTTATGCAGCGCAACCCCGGATTGGCACGGAAAGGGGCCAGAGGG
CCGCACAGGCGGTCGTCTCTCAGTCGGTGTAAAAGTGTCAAGGAaccgga
gaagaagagacacACCGCTACTGATGTCAGTCGGTCTGGTACAGTCCAAT
TTTCTTTCGCCTTACTTAATCAGGTCTTGTGAATGAGCGGCAGCGGAGAA
GTAAATCCCTTCGCTACGCAGAgcggaggtgacggaggaccTGGCGCAGG
CAGGAACAGGCCGCCATCTCCACCGCGAGCGGATGAGCCCGCATGGTTGA
ACGCCAatgccgcctctcccccgtcgCCCGCCGCCCCGCACTCCTCGCAC
GTGCCTATACAGCCCGCCACACTCCAGCCTCAAGCCGCGACCCAACCGCA
GCCTCCAAGCGGACAAACTCCCCCTTTAGTGATTTACATGCGCGTGGCAA
ATTTTGCGCTTTGTATCCTCATGTCTGCGGCTGCCGTGTTGACGGTCATA
GTTCCTGCCGGGGCCACGCCTGCCTCGTGGGTGCTTGCCTTTTACGTTCT
CGCTTTTTCTTGCCTGTTGTGCTGCTTTGAGGTCAATTTGCGTAGGGTGG
CGAAGCACATTGCCAACAACTTTGGCTTCCTCTACGACGCCAAAAGCCGG
GCCactttcctcatcttcgtcgGCGTCCTCTGTTTTTCCCTCGGGATCAC
CGGAAAGGTTGCGGGTGCTGCCATGATAGCCAACGCGCTCTTTAACACCG
TCGTCCTGTGTAAGTACCCTCAGTACGCCACCAACGCCCCAACCACCACG
GCTGAGCAAGAAGCCGCGCAATTTATGCAGCGCAACCCCGGATTGGCACG
GAAAGGGGCCAGAGGGCCGCACAGGCGGTCGTCTCTCAGTCGGTGTAAAA
GTGTCAAGGAaccggagaagaagagacacACCGCTACTGATGTCAGTCGG
TCTGGTACAGTCCAATTTTCTTTCGCCTTACTTAATCAGGTCTTGTGAAT
GAGCGGCAGCGGAGAAGTAAATCCCTTCGCTACGCAGAgcggaggtgacg
gaggaccTGGCGCAGGCAGGAACAGGCCGCCATCTCCACCGCGAGCGGAT
GAGCCCGCATGGTTGAACGCCAatgccgcctctcccccgtcgCCCGCCGC
CCCGCACTCCTCGCACGTGCCTATACAGCCCGCCACACTCCAGCCTCAAG
CCGCGACCCAACCGCAGCCTCCAAGCGGACAAACTCCCCCTTTAGTGATT
TACATGCGCGTGGCAAATTTTGCGCTTTGTATCCTCATGTCTGCGGCTGC
CGTGTTGACGGTCATAGTTCCTGCCGGGGCCACGCCTGCCTCGTGGGTGC
TTGCCTTTTACGTTCTCGCTTTTTCTTGCCTGTTGTGCTGCTTTGAGGTC
AATTTGCGTAGGGTGGCGAAGCACATTGCCAACAACTTTGGCTTCCTCTA
CGACGCCAAAAGCCGGGCCactttcctcatcttcgtcgGCGTCCTCTGTT
TTTCCCTCGGGATCACCGGAAAGGTTGCGGGTGCTGCCATGATAGCCAAC
GCGCTCTTTAACACCGTCGTCCTGTGTAAGTACCCTCAGTACGCCACCAA
CGCCCCAACCACCACGGCTGAGCAAGAAGCCGCGCAATTTATGCAGCGCA
ACCCCGGATTGGCACGGAAAGGGGCCAGAGGGCCGCACAGGCGGTCGTCT
CTCAGTCGGTGTAAAAGTGTCAAGGAaccggagaagaagagacacACCGC
TACTGATGTCAGTCGGTCTGGTACAGTCCAATTTTCTTTCGCCTTACTTA
ATCAGGTCTTGTGA

Synonyms

Publications