EWM30415.1, cds297 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30415.1 vs. NCBI_GenBank
Match: gi|585113075|gb|EWM30415.1| (Golgi apparatus membrane protein TVP15 [Nannochloropsis gaditana]) HSP 1 Score: 551.592 bits (1420), Expect = 0.000e+0 Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0 Query: 1 MSGSGEVNPFATQSGGDGGPGAGRNRPPSPPRADEPAWLNANAASPPSPAAPHSSHVPIQPATLQPQAATQPQPPSGQTPPLVIYMRVANFALCILMSAAAVLTVIVPAGATPASWVLAFYVLAFSCLLCCFEVNLRRVAKHIANNFGFLYDAKSRATFLIFVGVLCFSLGITGKVAGAAMIANALFNTVVLCKYPQYATNAPTTTAEQEAAQFMQRNPGLARKGARGPHRRSSLSRCKSVKEPEKKRHTATDVSRSGTVQFSFALLNQVL 271 MSGSGEVNPFATQSGGDGGPGAGRNRPPSPPRADEPAWLNANAASPPSPAAPHSSHVPIQPATLQPQAATQPQPPSGQTPPLVIYMRVANFALCILMSAAAVLTVIVPAGATPASWVLAFYVLAFSCLLCCFEVNLRRVAKHIANNFGFLYDAKSRATFLIFVGVLCFSLGITGKVAGAAMIANALFNTVVLCKYPQYATNAPTTTAEQEAAQFMQRNPGLARKGARGPHRRSSLSRCKSVKEPEKKRHTATDVSRSGTVQFSFALLNQVL Sbjct: 1 MSGSGEVNPFATQSGGDGGPGAGRNRPPSPPRADEPAWLNANAASPPSPAAPHSSHVPIQPATLQPQAATQPQPPSGQTPPLVIYMRVANFALCILMSAAAVLTVIVPAGATPASWVLAFYVLAFSCLLCCFEVNLRRVAKHIANNFGFLYDAKSRATFLIFVGVLCFSLGITGKVAGAAMIANALFNTVVLCKYPQYATNAPTTTAEQEAAQFMQRNPGLARKGARGPHRRSSLSRCKSVKEPEKKRHTATDVSRSGTVQFSFALLNQVL 271
BLAST of EWM30415.1 vs. NCBI_GenBank
Match: gi|299473595|emb|CBN77990.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 150.599 bits (379), Expect = 2.962e-41 Identity = 85/166 (51.20%), Postives = 105/166 (63.25%), Query Frame = 0 Query: 78 QTPPLVIYMRVANFALCILMSAAAVLTVIVPAGATPASWVLAFYVLAFSCLLCCFEVNLRRVAKHIANNFGFLYDAKSRATFLIFVGVLCFSLG-ITGKVAGAAMIANALFNTVVLCKYPQYATNAPTTTAEQE---------------AAQFMQRNPGLARKGAR 227 + P L+IYMRVAN ALC +++A AVL +I AG A VLA Y+ AFSC+LCCFE +L+ VAK IA NFGFLY+AK RA FLIFVGVLCFSL VAGA M+ NA+FN V+ KYP++ + E E +F + NP LARKGA+ Sbjct: 50 KVPQLMIYMRVANIALCGILAATAVLKLI-GAGVDVAGAVLACYLCAFSCILCCFETHLKVVAKTIAANFGFLYNAKGRAVFLIFVGVLCFSLNSDIAFVAGALMMVNAVFNFYVIFKYPEFERDLQRKDLESEGRDYLRANRGALAQAGVEFARNNPDLARKGAQ 214
BLAST of EWM30415.1 vs. NCBI_GenBank
Match: gi|301090713|ref|XP_002895560.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|301091002|ref|XP_002895695.1| conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262097070|gb|EEY55122.1| conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262097799|gb|EEY55851.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 104.375 bits (259), Expect = 1.612e-23 Identity = 59/169 (34.91%), Postives = 88/169 (52.07%), Query Frame = 0 Query: 78 QTPPLVIYMRVANFALCILMSAAAVLTVIVPAGATPASWVLAFYVLAFSCLLCCFEVNLRRVAKHIANNFGFLYDAKSRATFLIFVGVLCFSLG-ITGKVAGAAMIANALFNTVVLCKYPQYAT--------NAPTTTAEQEAAQFMQRNPGLARKGARGPHRRSSLSR 237 + P L+ YMR+ N IL A V+ + +++ YV+ F L FE L R+ I +NFGFLY K RA F+ F+G L F +G +AG M NA N +V+C++PQ+ + A TT+ QEAA FM +NP LA K + ++++ +R Sbjct: 39 ELPKLLRYMRLGNVGCSILQIIAGVVGITSFITLNITGTLVSIYVIMFGILFLLFECRLSRMETAIRSNFGFLYSYKGRAAFIFFIGFLDFGIGSALATIAGVLMCFNAFINLLVMCRHPQFKSTLSADADPTAGYTTSSQEAANFMNKNPELAAKAGQYAFQQAANTR 207
BLAST of EWM30415.1 vs. NCBI_GenBank
Match: gi|695431382|ref|XP_009530670.1| (hypothetical protein PHYSODRAFT_511445 [Phytophthora sojae] >gi|348673422|gb|EGZ13241.1| hypothetical protein PHYSODRAFT_511445 [Phytophthora sojae]) HSP 1 Score: 103.605 bits (257), Expect = 2.380e-23 Identity = 59/169 (34.91%), Postives = 87/169 (51.48%), Query Frame = 0 Query: 78 QTPPLVIYMRVANFALCILMSAAAVLTVIVPAGATPASWVLAFYVLAFSCLLCCFEVNLRRVAKHIANNFGFLYDAKSRATFLIFVGVLCFSLG-ITGKVAGAAMIANALFNTVVLCKYPQYATN--------APTTTAEQEAAQFMQRNPGLARKGARGPHRRSSLSR 237 + P L+ YMR+ N IL A V+ + +++ YV+ F L FE L R+ I +NFGFLY K RA F+ F+G L F +G +AG M NA N +V+C++PQ+ ++ A TT QEAA FM +NP LA K + + ++ +R Sbjct: 39 ELPKLLRYMRLGNVGCSILQIIAGVVGITSFITLNITGTLVSIYVIMFGILFLLFECRLSRMETAIRSNFGFLYSYKGRAAFIFFIGFLDFGIGSALATIAGVLMCFNAFINLLVMCRHPQFKSSLSADADPTAGYTTGSQEAANFMSKNPELAAKAGQYAFQHAANTR 207
BLAST of EWM30415.1 vs. NCBI_GenBank
Match: gi|675199677|ref|XP_008908723.1| (hypothetical protein PPTG_13987 [Phytophthora parasitica INRA-310] >gi|566019573|gb|ETI42484.1| hypothetical protein F443_12393 [Phytophthora parasitica P1569] >gi|567956893|gb|ETK82507.1| hypothetical protein L915_12115 [Phytophthora parasitica] >gi|567985552|gb|ETL35891.1| hypothetical protein L916_12040 [Phytophthora parasitica] >gi|568014948|gb|ETL89125.1| hypothetical protein L917_11881 [Phytophthora parasitica] >gi|568045227|gb|ETM42383.1| hypothetical protein L914_11951 [Phytophthora parasitica] >gi|568091397|gb|ETN06221.1| hypothetical protein PPTG_13987 [Phytophthora parasitica INRA-310] >gi|570323181|gb|ETO71129.1| hypothetical protein F444_12493 [Phytophthora parasitica P1976] >gi|570946966|gb|ETP12223.1| hypothetical protein F441_12379 [Phytophthora parasitica CJ01A1] >gi|570979383|gb|ETP40329.1| hypothetical protein F442_12316 [Phytophthora parasitica P10297] >gi|970644250|gb|KUF85179.1| hypothetical protein AM588_10000831 [Phytophthora nicotianae] >gi|970662264|gb|KUF99667.1| hypothetical protein AM587_10002530 [Phytophthora nicotianae] >gi|970663515|gb|KUG00670.1| hypothetical protein AM587_10002258 [Phytophthora nicotianae]) HSP 1 Score: 103.605 bits (257), Expect = 2.700e-23 Identity = 58/169 (34.32%), Postives = 88/169 (52.07%), Query Frame = 0 Query: 78 QTPPLVIYMRVANFALCILMSAAAVLTVIVPAGATPASWVLAFYVLAFSCLLCCFEVNLRRVAKHIANNFGFLYDAKSRATFLIFVGVLCFSLG-ITGKVAGAAMIANALFNTVVLCKYPQYAT--------NAPTTTAEQEAAQFMQRNPGLARKGARGPHRRSSLSR 237 + P L+ YMR+ N IL A ++ + +++ YV+ F L FE L R+ I +NFGFLY K RA F+ F+G L F +G +AG M NA N +V+C++PQ+ + A TT+ QEAA FM +NP LA K + ++++ +R Sbjct: 39 ELPKLLRYMRLGNVGCSILQIIAGIVGITSFITLNITGTLVSIYVIMFGILFLLFECRLSRMETAIRSNFGFLYSYKGRAAFIFFIGFLDFGIGSALATIAGVLMCFNAFINLLVMCRHPQFKSTLSADADPTAGYTTSSQEAANFMSKNPELAAKAGQYAFQQAANTR 207
BLAST of EWM30415.1 vs. NCBI_GenBank
Match: gi|1214698331|gb|OWZ11376.1| (Golgi apparatus membrane protein TVP15 [Phytophthora megakarya]) HSP 1 Score: 102.834 bits (255), Expect = 4.865e-23 Identity = 59/169 (34.91%), Postives = 90/169 (53.25%), Query Frame = 0 Query: 78 QTPPLVIYMRVANFALCILMSAAAVLTVIVPAGATPASWVLAFYVLAFSCLLCCFEVNLRRVAKHIANNFGFLYDAKSRATFLIFVGVLCFSLG-ITGKVAGAAMIANALFNTVVLCKYPQY-----ATNAPT---TTAEQEAAQFMQRNPGLARKGARGPHRRSSLSR 237 + P L+ YMR+ N IL A ++ + +++ YV+ F L FE L R+ I +NFGFLY K RA F+ F+G L F +G +AG M NA N +V+C++P++ A + PT TT+ QEAA FM +NP LA K + ++++ +R Sbjct: 39 ELPKLLRYMRLGNVGCSILQIIAGIVGITSFITLNITGTLVSIYVIMFGILFLLFECRLSRMETAIRSNFGFLYSYKGRAAFIFFIGFLDFGIGSALATIAGVLMCFNAFINLLVMCRHPEFKSTLGADSDPTAGYTTSSQEAANFMSKNPELAAKAGQYAFQQAANTR 207
BLAST of EWM30415.1 vs. NCBI_GenBank
Match: gi|375267604|emb|CCD28252.1| (golgi apparatus membrane protein TVP15, partial [Plasmopara viticola]) HSP 1 Score: 102.449 bits (254), Expect = 7.622e-23 Identity = 56/169 (33.14%), Postives = 88/169 (52.07%), Query Frame = 0 Query: 78 QTPPLVIYMRVANFALCILMSAAAVLTVIVPAGATPASWVLAFYVLAFSCLLCCFEVNLRRVAKHIANNFGFLYDAKSRATFLIFVGVLCFSLG-ITGKVAGAAMIANALFNTVVLCKYPQYAT--------NAPTTTAEQEAAQFMQRNPGLARKGARGPHRRSSLSR 237 + P L+ YMR+ N I+ A ++ + +++ YV+ F L FE L R+ I +NFGFLY K RA F+ F+G L F +G +AG M NA N +V+C++P++ + A TT+ QEAA FM +NP LA K + ++++ +R Sbjct: 38 ELPKLLRYMRLGNVGCSIIQIIAGIVGITSFITLNITGTLVSIYVIMFGILFLLFECRLSRMETAIRSNFGFLYSYKGRAAFIFFIGFLDFGIGSALATIAGVFMCMNAFINLLVMCRHPEFKSTLSADADPTAGYTTSSQEAASFMSKNPELAAKAGQYAFQQAAXTR 206
BLAST of EWM30415.1 vs. NCBI_GenBank
Match: gi|953494893|emb|CEG43534.1| (Golgi apparatus membrane protein TVP15 [Plasmopara halstedii]) HSP 1 Score: 100.523 bits (249), Expect = 3.567e-22 Identity = 56/169 (33.14%), Postives = 87/169 (51.48%), Query Frame = 0 Query: 78 QTPPLVIYMRVANFALCILMSAAAVLTVIVPAGATPASWVLAFYVLAFSCLLCCFEVNLRRVAKHIANNFGFLYDAKSRATFLIFVGVLCFSLG-ITGKVAGAAMIANALFNTVVLCKYPQYAT--------NAPTTTAEQEAAQFMQRNPGLARKGARGPHRRSSLSR 237 + P L+ YMR+ N I+ A ++ + +++ YV+ F L FE L R+ I +NFGFLY K RA F+ F+G L F +G +AG M NA N +V+C++P++ + A TT+ QEAA FM +NP LA K + + ++ +R Sbjct: 38 ELPKLLRYMRLGNVGCSIIQIIAGIVGITSFITLNITGTLVSIYVIMFGILFLLFECRLSRMETAIRSNFGFLYSYKGRAAFIFFIGFLDFGIGSALATIAGVLMCFNAFINLLVMCRHPEFKSTLSADADPTAGYTTSSQEAASFMSKNPELAAKAGQYAFQHAANTR 206
BLAST of EWM30415.1 vs. NCBI_GenBank
Match: gi|224005831|ref|XP_002291876.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220972395|gb|EED90727.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 97.8265 bits (242), Expect = 7.028e-21 Identity = 70/206 (33.98%), Postives = 106/206 (51.46%), Query Frame = 0 Query: 34 DEPAWLNANAASPPSPAAPHSSHVPIQPATLQPQAATQPQPP-----SGQT--PPLVIYMRVANFALCILMSAAAV--LTVIVPAGATPASWVLAFYVLAFSCLLCCFEVNLRRVAKHIANNFGFLYDAKSRATFLIFVGVLCFSLG-ITGKVAGAAMIANALFNTVVLCKYPQYATNAPTTTAEQEAAQFMQRNPG-LARKGARG 228 D+P+W+ NA+ P P QPA + +PP SG+ P +V++MR+ N L+ ++ LT I + P VLA Y + F L+CC E+N+ + + IA+NFGFLY+ R F + +G++ +S G + G VA A++A +L NT VLC+YP Y A A E + ++R ARK A G Sbjct: 16 DQPSWVTLNASQSEDADLPWDRPEP-QPAEPADDLWPRSRPPTATKESGENNLPKIVLFMRLGNMVAAGLLVFGSIGSLTNIF---SLPVM-VLAGYGICFGSLICCLEINISFIRQPIASNFGFLYNPFYRLIFYVLMGMVAWSFGTLLGIVASGALMALSLINTYVLCRYPGY--KAALKEASDEEEKRLKRGANRAARKHAWG 214
BLAST of EWM30415.1 vs. NCBI_GenBank
Match: gi|673032292|ref|XP_008870107.1| (hypothetical protein H310_06724 [Aphanomyces invadans] >gi|574474107|gb|ETW01109.1| hypothetical protein H310_06724 [Aphanomyces invadans]) HSP 1 Score: 93.9745 bits (232), Expect = 1.486e-19 Identity = 56/159 (35.22%), Postives = 82/159 (51.57%), Query Frame = 0 Query: 78 QTPPLVIYMRVANFALCILMSAAAV--LTVIVPAGATPASWVLAFYVLAFSCLLCCFEVNLRRVAKHIANNFGFLYDAKSRATFLIFVGVLCFSL-GITGKVAGAAMIANALFNTVVLCKYPQYATNAPTTTAE---------QEAAQFMQRNPGLARK 224 +TP L+ YMRV N CIL A + L IV T ++ YV+ F L FE L + I NFGFLY RA F+ F+G + F G G +AG M ANA N ++ K+P++A+ +++++ QEA F+Q NP +A++ Sbjct: 35 ETPKLLRYMRVGNMLCCILQVFAGISGLASIVTLNITAV--FVSLYVILFGVLFLLFECRLSSLEPKIRENFGFLYSYHGRARFIFFIGFMDFGTGGGLGYLAGIVMCANAFLNFWIMYKHPEFASGNLSSSSDPTVGYAPATQEATTFLQNNPNIAKQ 191 The following BLAST results are available for this feature:
BLAST of EWM30415.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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