EWM30415.1, cds297 (CDS) Nannochloropsis gaditana

Overview
NameEWM30415.1
Unique Namecds297
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:736253..736291 +
Alignment locationCM002455.1:736402..736730 +
Alignment locationCM002455.1:736940..737243 +
Alignment locationCM002455.1:737359..737502 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30415.1
ProductGolgi apparatus membrane protein TVP15
Orig transcript idgnl|cribi|Naga_100026g18.10669.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:736253..736291 +
CM002455.1supercontigCM002455.1:736402..736730 +
CM002455.1supercontigCM002455.1:736940..737243 +
CM002455.1supercontigCM002455.1:737359..737502 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR013714Golgi_TVP15
Homology
BLAST of EWM30415.1 vs. NCBI_GenBank
Match: gi|585113075|gb|EWM30415.1| (Golgi apparatus membrane protein TVP15 [Nannochloropsis gaditana])

HSP 1 Score: 551.592 bits (1420), Expect = 0.000e+0
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0
Query:    1 MSGSGEVNPFATQSGGDGGPGAGRNRPPSPPRADEPAWLNANAASPPSPAAPHSSHVPIQPATLQPQAATQPQPPSGQTPPLVIYMRVANFALCILMSAAAVLTVIVPAGATPASWVLAFYVLAFSCLLCCFEVNLRRVAKHIANNFGFLYDAKSRATFLIFVGVLCFSLGITGKVAGAAMIANALFNTVVLCKYPQYATNAPTTTAEQEAAQFMQRNPGLARKGARGPHRRSSLSRCKSVKEPEKKRHTATDVSRSGTVQFSFALLNQVL 271
            MSGSGEVNPFATQSGGDGGPGAGRNRPPSPPRADEPAWLNANAASPPSPAAPHSSHVPIQPATLQPQAATQPQPPSGQTPPLVIYMRVANFALCILMSAAAVLTVIVPAGATPASWVLAFYVLAFSCLLCCFEVNLRRVAKHIANNFGFLYDAKSRATFLIFVGVLCFSLGITGKVAGAAMIANALFNTVVLCKYPQYATNAPTTTAEQEAAQFMQRNPGLARKGARGPHRRSSLSRCKSVKEPEKKRHTATDVSRSGTVQFSFALLNQVL
Sbjct:    1 MSGSGEVNPFATQSGGDGGPGAGRNRPPSPPRADEPAWLNANAASPPSPAAPHSSHVPIQPATLQPQAATQPQPPSGQTPPLVIYMRVANFALCILMSAAAVLTVIVPAGATPASWVLAFYVLAFSCLLCCFEVNLRRVAKHIANNFGFLYDAKSRATFLIFVGVLCFSLGITGKVAGAAMIANALFNTVVLCKYPQYATNAPTTTAEQEAAQFMQRNPGLARKGARGPHRRSSLSRCKSVKEPEKKRHTATDVSRSGTVQFSFALLNQVL 271          
BLAST of EWM30415.1 vs. NCBI_GenBank
Match: gi|299473595|emb|CBN77990.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 150.599 bits (379), Expect = 2.962e-41
Identity = 85/166 (51.20%), Postives = 105/166 (63.25%), Query Frame = 0
Query:   78 QTPPLVIYMRVANFALCILMSAAAVLTVIVPAGATPASWVLAFYVLAFSCLLCCFEVNLRRVAKHIANNFGFLYDAKSRATFLIFVGVLCFSLG-ITGKVAGAAMIANALFNTVVLCKYPQYATNAPTTTAEQE---------------AAQFMQRNPGLARKGAR 227
            + P L+IYMRVAN ALC +++A AVL +I  AG   A  VLA Y+ AFSC+LCCFE +L+ VAK IA NFGFLY+AK RA FLIFVGVLCFSL      VAGA M+ NA+FN  V+ KYP++  +      E E                 +F + NP LARKGA+
Sbjct:   50 KVPQLMIYMRVANIALCGILAATAVLKLI-GAGVDVAGAVLACYLCAFSCILCCFETHLKVVAKTIAANFGFLYNAKGRAVFLIFVGVLCFSLNSDIAFVAGALMMVNAVFNFYVIFKYPEFERDLQRKDLESEGRDYLRANRGALAQAGVEFARNNPDLARKGAQ 214          
BLAST of EWM30415.1 vs. NCBI_GenBank
Match: gi|301090713|ref|XP_002895560.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|301091002|ref|XP_002895695.1| conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262097070|gb|EEY55122.1| conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262097799|gb|EEY55851.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 104.375 bits (259), Expect = 1.612e-23
Identity = 59/169 (34.91%), Postives = 88/169 (52.07%), Query Frame = 0
Query:   78 QTPPLVIYMRVANFALCILMSAAAVLTVIVPAGATPASWVLAFYVLAFSCLLCCFEVNLRRVAKHIANNFGFLYDAKSRATFLIFVGVLCFSLG-ITGKVAGAAMIANALFNTVVLCKYPQYAT--------NAPTTTAEQEAAQFMQRNPGLARKGARGPHRRSSLSR 237
            + P L+ YMR+ N    IL   A V+ +           +++ YV+ F  L   FE  L R+   I +NFGFLY  K RA F+ F+G L F +G     +AG  M  NA  N +V+C++PQ+ +         A  TT+ QEAA FM +NP LA K  +   ++++ +R
Sbjct:   39 ELPKLLRYMRLGNVGCSILQIIAGVVGITSFITLNITGTLVSIYVIMFGILFLLFECRLSRMETAIRSNFGFLYSYKGRAAFIFFIGFLDFGIGSALATIAGVLMCFNAFINLLVMCRHPQFKSTLSADADPTAGYTTSSQEAANFMNKNPELAAKAGQYAFQQAANTR 207          
BLAST of EWM30415.1 vs. NCBI_GenBank
Match: gi|695431382|ref|XP_009530670.1| (hypothetical protein PHYSODRAFT_511445 [Phytophthora sojae] >gi|348673422|gb|EGZ13241.1| hypothetical protein PHYSODRAFT_511445 [Phytophthora sojae])

HSP 1 Score: 103.605 bits (257), Expect = 2.380e-23
Identity = 59/169 (34.91%), Postives = 87/169 (51.48%), Query Frame = 0
Query:   78 QTPPLVIYMRVANFALCILMSAAAVLTVIVPAGATPASWVLAFYVLAFSCLLCCFEVNLRRVAKHIANNFGFLYDAKSRATFLIFVGVLCFSLG-ITGKVAGAAMIANALFNTVVLCKYPQYATN--------APTTTAEQEAAQFMQRNPGLARKGARGPHRRSSLSR 237
            + P L+ YMR+ N    IL   A V+ +           +++ YV+ F  L   FE  L R+   I +NFGFLY  K RA F+ F+G L F +G     +AG  M  NA  N +V+C++PQ+ ++        A  TT  QEAA FM +NP LA K  +   + ++ +R
Sbjct:   39 ELPKLLRYMRLGNVGCSILQIIAGVVGITSFITLNITGTLVSIYVIMFGILFLLFECRLSRMETAIRSNFGFLYSYKGRAAFIFFIGFLDFGIGSALATIAGVLMCFNAFINLLVMCRHPQFKSSLSADADPTAGYTTGSQEAANFMSKNPELAAKAGQYAFQHAANTR 207          
BLAST of EWM30415.1 vs. NCBI_GenBank
Match: gi|675199677|ref|XP_008908723.1| (hypothetical protein PPTG_13987 [Phytophthora parasitica INRA-310] >gi|566019573|gb|ETI42484.1| hypothetical protein F443_12393 [Phytophthora parasitica P1569] >gi|567956893|gb|ETK82507.1| hypothetical protein L915_12115 [Phytophthora parasitica] >gi|567985552|gb|ETL35891.1| hypothetical protein L916_12040 [Phytophthora parasitica] >gi|568014948|gb|ETL89125.1| hypothetical protein L917_11881 [Phytophthora parasitica] >gi|568045227|gb|ETM42383.1| hypothetical protein L914_11951 [Phytophthora parasitica] >gi|568091397|gb|ETN06221.1| hypothetical protein PPTG_13987 [Phytophthora parasitica INRA-310] >gi|570323181|gb|ETO71129.1| hypothetical protein F444_12493 [Phytophthora parasitica P1976] >gi|570946966|gb|ETP12223.1| hypothetical protein F441_12379 [Phytophthora parasitica CJ01A1] >gi|570979383|gb|ETP40329.1| hypothetical protein F442_12316 [Phytophthora parasitica P10297] >gi|970644250|gb|KUF85179.1| hypothetical protein AM588_10000831 [Phytophthora nicotianae] >gi|970662264|gb|KUF99667.1| hypothetical protein AM587_10002530 [Phytophthora nicotianae] >gi|970663515|gb|KUG00670.1| hypothetical protein AM587_10002258 [Phytophthora nicotianae])

HSP 1 Score: 103.605 bits (257), Expect = 2.700e-23
Identity = 58/169 (34.32%), Postives = 88/169 (52.07%), Query Frame = 0
Query:   78 QTPPLVIYMRVANFALCILMSAAAVLTVIVPAGATPASWVLAFYVLAFSCLLCCFEVNLRRVAKHIANNFGFLYDAKSRATFLIFVGVLCFSLG-ITGKVAGAAMIANALFNTVVLCKYPQYAT--------NAPTTTAEQEAAQFMQRNPGLARKGARGPHRRSSLSR 237
            + P L+ YMR+ N    IL   A ++ +           +++ YV+ F  L   FE  L R+   I +NFGFLY  K RA F+ F+G L F +G     +AG  M  NA  N +V+C++PQ+ +         A  TT+ QEAA FM +NP LA K  +   ++++ +R
Sbjct:   39 ELPKLLRYMRLGNVGCSILQIIAGIVGITSFITLNITGTLVSIYVIMFGILFLLFECRLSRMETAIRSNFGFLYSYKGRAAFIFFIGFLDFGIGSALATIAGVLMCFNAFINLLVMCRHPQFKSTLSADADPTAGYTTSSQEAANFMSKNPELAAKAGQYAFQQAANTR 207          
BLAST of EWM30415.1 vs. NCBI_GenBank
Match: gi|1214698331|gb|OWZ11376.1| (Golgi apparatus membrane protein TVP15 [Phytophthora megakarya])

HSP 1 Score: 102.834 bits (255), Expect = 4.865e-23
Identity = 59/169 (34.91%), Postives = 90/169 (53.25%), Query Frame = 0
Query:   78 QTPPLVIYMRVANFALCILMSAAAVLTVIVPAGATPASWVLAFYVLAFSCLLCCFEVNLRRVAKHIANNFGFLYDAKSRATFLIFVGVLCFSLG-ITGKVAGAAMIANALFNTVVLCKYPQY-----ATNAPT---TTAEQEAAQFMQRNPGLARKGARGPHRRSSLSR 237
            + P L+ YMR+ N    IL   A ++ +           +++ YV+ F  L   FE  L R+   I +NFGFLY  K RA F+ F+G L F +G     +AG  M  NA  N +V+C++P++     A + PT   TT+ QEAA FM +NP LA K  +   ++++ +R
Sbjct:   39 ELPKLLRYMRLGNVGCSILQIIAGIVGITSFITLNITGTLVSIYVIMFGILFLLFECRLSRMETAIRSNFGFLYSYKGRAAFIFFIGFLDFGIGSALATIAGVLMCFNAFINLLVMCRHPEFKSTLGADSDPTAGYTTSSQEAANFMSKNPELAAKAGQYAFQQAANTR 207          
BLAST of EWM30415.1 vs. NCBI_GenBank
Match: gi|375267604|emb|CCD28252.1| (golgi apparatus membrane protein TVP15, partial [Plasmopara viticola])

HSP 1 Score: 102.449 bits (254), Expect = 7.622e-23
Identity = 56/169 (33.14%), Postives = 88/169 (52.07%), Query Frame = 0
Query:   78 QTPPLVIYMRVANFALCILMSAAAVLTVIVPAGATPASWVLAFYVLAFSCLLCCFEVNLRRVAKHIANNFGFLYDAKSRATFLIFVGVLCFSLG-ITGKVAGAAMIANALFNTVVLCKYPQYAT--------NAPTTTAEQEAAQFMQRNPGLARKGARGPHRRSSLSR 237
            + P L+ YMR+ N    I+   A ++ +           +++ YV+ F  L   FE  L R+   I +NFGFLY  K RA F+ F+G L F +G     +AG  M  NA  N +V+C++P++ +         A  TT+ QEAA FM +NP LA K  +   ++++ +R
Sbjct:   38 ELPKLLRYMRLGNVGCSIIQIIAGIVGITSFITLNITGTLVSIYVIMFGILFLLFECRLSRMETAIRSNFGFLYSYKGRAAFIFFIGFLDFGIGSALATIAGVFMCMNAFINLLVMCRHPEFKSTLSADADPTAGYTTSSQEAASFMSKNPELAAKAGQYAFQQAAXTR 206          
BLAST of EWM30415.1 vs. NCBI_GenBank
Match: gi|953494893|emb|CEG43534.1| (Golgi apparatus membrane protein TVP15 [Plasmopara halstedii])

HSP 1 Score: 100.523 bits (249), Expect = 3.567e-22
Identity = 56/169 (33.14%), Postives = 87/169 (51.48%), Query Frame = 0
Query:   78 QTPPLVIYMRVANFALCILMSAAAVLTVIVPAGATPASWVLAFYVLAFSCLLCCFEVNLRRVAKHIANNFGFLYDAKSRATFLIFVGVLCFSLG-ITGKVAGAAMIANALFNTVVLCKYPQYAT--------NAPTTTAEQEAAQFMQRNPGLARKGARGPHRRSSLSR 237
            + P L+ YMR+ N    I+   A ++ +           +++ YV+ F  L   FE  L R+   I +NFGFLY  K RA F+ F+G L F +G     +AG  M  NA  N +V+C++P++ +         A  TT+ QEAA FM +NP LA K  +   + ++ +R
Sbjct:   38 ELPKLLRYMRLGNVGCSIIQIIAGIVGITSFITLNITGTLVSIYVIMFGILFLLFECRLSRMETAIRSNFGFLYSYKGRAAFIFFIGFLDFGIGSALATIAGVLMCFNAFINLLVMCRHPEFKSTLSADADPTAGYTTSSQEAASFMSKNPELAAKAGQYAFQHAANTR 206          
BLAST of EWM30415.1 vs. NCBI_GenBank
Match: gi|224005831|ref|XP_002291876.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220972395|gb|EED90727.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 97.8265 bits (242), Expect = 7.028e-21
Identity = 70/206 (33.98%), Postives = 106/206 (51.46%), Query Frame = 0
Query:   34 DEPAWLNANAASPPSPAAPHSSHVPIQPATLQPQAATQPQPP-----SGQT--PPLVIYMRVANFALCILMSAAAV--LTVIVPAGATPASWVLAFYVLAFSCLLCCFEVNLRRVAKHIANNFGFLYDAKSRATFLIFVGVLCFSLG-ITGKVAGAAMIANALFNTVVLCKYPQYATNAPTTTAEQEAAQFMQRNPG-LARKGARG 228
            D+P+W+  NA+       P     P QPA        + +PP     SG+   P +V++MR+ N     L+   ++  LT I    + P   VLA Y + F  L+CC E+N+  + + IA+NFGFLY+   R  F + +G++ +S G + G VA  A++A +L NT VLC+YP Y   A    A  E  + ++R     ARK A G
Sbjct:   16 DQPSWVTLNASQSEDADLPWDRPEP-QPAEPADDLWPRSRPPTATKESGENNLPKIVLFMRLGNMVAAGLLVFGSIGSLTNIF---SLPVM-VLAGYGICFGSLICCLEINISFIRQPIASNFGFLYNPFYRLIFYVLMGMVAWSFGTLLGIVASGALMALSLINTYVLCRYPGY--KAALKEASDEEEKRLKRGANRAARKHAWG 214          
BLAST of EWM30415.1 vs. NCBI_GenBank
Match: gi|673032292|ref|XP_008870107.1| (hypothetical protein H310_06724 [Aphanomyces invadans] >gi|574474107|gb|ETW01109.1| hypothetical protein H310_06724 [Aphanomyces invadans])

HSP 1 Score: 93.9745 bits (232), Expect = 1.486e-19
Identity = 56/159 (35.22%), Postives = 82/159 (51.57%), Query Frame = 0
Query:   78 QTPPLVIYMRVANFALCILMSAAAV--LTVIVPAGATPASWVLAFYVLAFSCLLCCFEVNLRRVAKHIANNFGFLYDAKSRATFLIFVGVLCFSL-GITGKVAGAAMIANALFNTVVLCKYPQYATNAPTTTAE---------QEAAQFMQRNPGLARK 224
            +TP L+ YMRV N   CIL   A +  L  IV    T     ++ YV+ F  L   FE  L  +   I  NFGFLY    RA F+ F+G + F   G  G +AG  M ANA  N  ++ K+P++A+   +++++         QEA  F+Q NP +A++
Sbjct:   35 ETPKLLRYMRVGNMLCCILQVFAGISGLASIVTLNITAV--FVSLYVILFGVLFLLFECRLSSLEPKIRENFGFLYSYHGRARFIFFIGFMDFGTGGGLGYLAGIVMCANAFLNFWIMYKHPEFASGNLSSSSDPTVGYAPATQEATTFLQNNPNIAKQ 191          
The following BLAST results are available for this feature:
BLAST of EWM30415.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113075|gb|EWM30415.1|0.000e+0100.00Golgi apparatus membrane protein TVP15 [Nannochlor... [more]
gi|299473595|emb|CBN77990.1|2.962e-4151.20conserved unknown protein [Ectocarpus siliculosus][more]
gi|301090713|ref|XP_002895560.1|1.612e-2334.91conserved hypothetical protein [Phytophthora infes... [more]
gi|695431382|ref|XP_009530670.1|2.380e-2334.91hypothetical protein PHYSODRAFT_511445 [Phytophtho... [more]
gi|675199677|ref|XP_008908723.1|2.700e-2334.32hypothetical protein PPTG_13987 [Phytophthora para... [more]
gi|1214698331|gb|OWZ11376.1|4.865e-2334.91Golgi apparatus membrane protein TVP15 [Phytophtho... [more]
gi|375267604|emb|CCD28252.1|7.622e-2333.14golgi apparatus membrane protein TVP15, partial [P... [more]
gi|953494893|emb|CEG43534.1|3.567e-2233.14Golgi apparatus membrane protein TVP15 [Plasmopara... [more]
gi|224005831|ref|XP_002291876.1|7.028e-2133.98predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|673032292|ref|XP_008870107.1|1.486e-1935.22hypothetical protein H310_06724 [Aphanomyces invad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna297rna297Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications