rna2964, rna2964 (mRNA) Nannochloropsis gaditana

Overview
Namerna2964
Unique Namerna2964
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1862
Alignment locationCM002460.1:369520..370272 +

Link to JBrowse

Properties
Property NameValue
Productohcu decarboxylase
Orig transcript idgnl|cribi|Naga_100034g15.6300.mrna
Orig protein idgnl|cribi|Naga_100034g15.6300
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:369520..370272 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100034g15gene2844Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2964rna2964-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27727.1cds2956Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2964 ID=rna2964|Name=rna2964|organism=Nannochloropsis gaditana|type=mRNA|length=1862bp
CGAATTCTCGTGTCATGGATTCTAAAGAGAAACCATAAATTTACGTCACA
ACAACTTCATCCGGTGGGATCATGTGCTCTTGTCTCCATCCGGGACGACT
CGTGTTGTCATACCAAAAAATATCCTCTTACCAGCCAAATAATCTTTGCT
CTTTGCTGACCTCAACAGTCGCTGTGCCAACTACCAGTACGCCCGAAAAA
TATGTCCTCCGCCAATCTCGTGGACATCAACAACCTGCAGCTCAAGCTTT
ACATTGGTGGAAAATTTGTTGAGGCGCCCTTACGGCTGCCTGTTGTTGAT
CCCGCCACGGAGGAAGTCATCGTGCACGCTCCTGCTGCTTCTGAGTCGCA
TATCAATCAAGCCGTCGAAGCCGCTCGCGCCGTCTTTCCTTACTGGTCCA
CCCTTGACGGAGCTTCGCGTGCCAAACATCTTGATGCTATTGCCGAGGCC
GTCAAGCGCCTGAAACCTCAACTGGCAGAGCTTGAATCTCGAGACAGCGG
GAAACCTCTTGCCGAGGCAATGTGGGATATGGACGACGTAAGCGGCACCT
TCACGTACTACGCTGGTTTGGCTCGAGAGCTGGACGGGAAGCAGTATGAA
GCGGTCACGGATTTGCCGCCCGGAGGGGACTTCACTGCCTCGTTGCGCTA
TGAGGCCGTGGGTGTGGTCGCAGCGATCGTCCCGTGGAACTACCCCTTGC
TCATGGCGACCTGGAAACTGGCGCCGGCCCTGGCGGCAGGCTGCAGCATT
GTACTGAAGCCCTCAGAGGTGACGCCTCTGACTGCTTTGCAGTTCGCGCT
GATCGTCGAGGAAGTGGGCCTGCCTGCGGGCGTCATCAACATCTTAACGG
GGGGGCCCGAGACTGGAGCCATCCTCTCGAACCACCAGGATGTGGATAAG
ATCACGTTCACAGGCTCGGTTCCCACGGGCGTTAAAATTATGACGGCAGC
TGCGAAAGGTATCAAGAATGTTACCTTAGAGCTAGGTGGGAAAAGCCCTG
CCATCGTGTTCGACTCCTGCGACCTCGCGCGGACCGTGGAGTGGGTCATG
TTTGGGTGTTTCTGGACCAATGGGCAGATCTGCTCGGCCACCTCGCGTTT
GCTGGTGCAGGAGACCATCTACGACAAGTTCATGGCCAAGCTGGTGGACG
AGACCAACAAGATTCAGGTGGGAAATCCTCTGGCAGAAGGAGTCAAAATG
GGCCCGATCGTTAACAAGGTTCAGTTCGACAAGGTGATGGGATTTTTAGA
GAGGGCGCGAGTGGAAGGCATCAATTTCGCCGCGGGAGGCGATCGCCCCA
CGGACTGTCCCCGAGGCTACTACGTACGCCCGACCGTCCTGACAGGCATG
CGGCCGACGGCTGAGGTGTGGAGCACTGAGATCTTCGGACCTGTGCTCTC
GGTCATGGCCTTCAGTACCGAGGATGAAGCTATTCGCATGGCGAATGATA
CGGAGTATGGCCTTGCCGGCGCGGTATTCTCAGGAGTGGAGGCTCAGCTG
AAGCGTGTGACAGAGCAACTTCGTTGTGGCTGTGTTTGGCGCAATTGCAG
CCAGCCTTGCTTCTCGCAGTTGCCGTGGGGCGGATGGAAGCGTAGTGGGA
TTGGGAGGGATTTGGGGCGAGAAGGCTTTAAGGCGTACTTAGAGACCAAA
CAAATCGTCACTCACGTCACAGAAAATGCTTTGGGATGGTACAACGTTGC
CAAGCTTTGATGAATGGATTGAGCTGCCTTGTGCAATATTCACCGCGGTC
GAAAAGCGCGAACAGAAGACTCGCACTACCCTCTTAGTAAGGCATTTAAA
AGCGCGTGTGTCATGAGCTGGTTTGAGGAAAATTTTAAAATGAAATCTGA
AAATGGAGAGGT
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protein sequence of rna2964

>rna2964-protein ID=rna2964-protein|Name=rna2964|organism=Nannochloropsis gaditana|type=polypeptide|length=198bp
MDMRAEDQQQMQDGIAKLNAMPVADLRTELLRICGSVSWVESVIKTFPHT
SAASILTAMDRAWWSLSRPDYLEAFAAHPRIGDGEALKKKFATVPKASGK
AGPVWEADEQKGAEGANEKTLQSLVVHNRLYEERFGHIFLVCATGKTADE
MLAILQDRMRNEPAYELIMAAGEQNKITALRLHKLLTFLGTREDSSRL
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mRNA from alignment at CM002460.1:369520..370272+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2964 ID=rna2964|Name=rna2964|organism=Nannochloropsis gaditana|type=mRNA|length=753bp|location=Sequence derived from alignment at CM002460.1:369520..370272+ (Nannochloropsis gaditana)
ATGGACATGCGAGCGGAGGATCAGGTAACATTCCAGTGTGAACGGGCTCC
TGCCTAGGTTCCATAAGTACCACTCGTGCGCCGGAGCTCACATCACCTCT
TGTTGGTCTCTGTCAGCAACAGATGCAAGATGGAATAGCCAAACTGAACG
CCATGCCTGTAGCCGACTTGCGCACCGAGTTACTGCGGATATGTGGCTCA
GTATCTTGGGTGGAGTCAGTCATCAAAACCTTCCCTCACACCTCGGCTGC
CTCGATCCTGACAGCAATGGATAGGGCGTGGTGGTCTCTGTCGAGACCCG
ATTACCTCGAGGCTTTTGCAGCCCATCCTCGTATCGGAGATGGGGAGGCT
TTAAAAAAGGTCAGTTTCCCGTTGTTGCGATTTCTGAAATAAATCCAATA
CTCATACATCTGCATTAAAACAGAAATTTGCCACCGTACCCAAGGCCAGT
GGCAAGGCGGGACCGGTTTGGGAGGCAGACGAACAAAAAGGAGCAGAAGG
GGCCAATGAAAAGACGCTTCAAAGCTTGGTTGTGCATAACAGATTGTACG
AAGAGCGATTTGGGCACATCTTTCTTGTCTGTGCCACTGGCAAAACGGCT
GACGAGATGCTTGCAATACTGCAAGATCGCATGCGCAACGAGCCAGCCTA
CGAGCTGATCATGGCGGCGGGAGAGCAGAATAAAATTACAGCACTGCGGC
TTCACAAACTTTTGACCTTTCTGGGGACACGAGAAGATTCAAGTCGGTTG
TAA
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Coding sequence (CDS) from alignment at CM002460.1:369520..370272+

>rna2964 ID=rna2964|Name=rna2964|organism=Nannochloropsis gaditana|type=CDS|length=1791bp|location=Sequence derived from alignment at CM002460.1:369520..370272+ (Nannochloropsis gaditana)
ATGGACATGCGAGCGGAGGATCAGCAACAGATGCAAGATGGAATAGCCAA
ACTGAACGCCATGCCTGTAGCCGACTTGCGCACCGAGTTACTGCGGATAT
GTGGCTCAGTATCTTGGGTGGAGTCAGTCATCAAAACCTTCCCTCACACC
TCGGCTGCCTCGATCCTGACAGCAATGGATAGGGCGTGGTGGTCTCTGTC
GAGACCCGATTACCTCGAGGCTTTTGCAGCCCATCCTCGTATCGGAGATG
GGGAGGCTTTAAAAAAGAAATTTGCCACCGTACCCAAGGCCAGTGGCAAG
GCGGGACCGGTTTGGGAGGCAGACGAACAAAAAGGAGCAGAAGGGGCCAA
TGAAAAGACGCTTCAAAGCTTGGTTGTGCATAACAGATTGTACGAAGAGC
GATTTGGGCACATCTTTCTTGTCTGTGCCACTGGCAAAACGGCTGACGAG
ATGCTTGCAATACTGCAAGATCGCATGCGCAACGAGCCAGCCTACGAGCT
GATCATGGCGGCGGGAGAGCAGAATAAAATTACAGCACTGCGGCTTCACA
AACTTTTGACCTTTCTGGGGACACGAGAAGATTCAAGTCGGTTGTAAATG
GACATGCGAGCGGAGGATCAGCAACAGATGCAAGATGGAATAGCCAAACT
GAACGCCATGCCTGTAGCCGACTTGCGCACCGAGTTACTGCGGATATGTG
GCTCAGTATCTTGGGTGGAGTCAGTCATCAAAACCTTCCCTCACACCTCG
GCTGCCTCGATCCTGACAGCAATGGATAGGGCGTGGTGGTCTCTGTCGAG
ACCCGATTACCTCGAGGCTTTTGCAGCCCATCCTCGTATCGGAGATGGGG
AGGCTTTAAAAAAGAAATTTGCCACCGTACCCAAGGCCAGTGGCAAGGCG
GGACCGGTTTGGGAGGCAGACGAACAAAAAGGAGCAGAAGGGGCCAATGA
AAAGACGCTTCAAAGCTTGGTTGTGCATAACAGATTGTACGAAGAGCGAT
TTGGGCACATCTTTCTTGTCTGTGCCACTGGCAAAACGGCTGACGAGATG
CTTGCAATACTGCAAGATCGCATGCGCAACGAGCCAGCCTACGAGCTGAT
CATGGCGGCGGGAGAGCAGAATAAAATTACAGCACTGCGGCTTCACAAAC
TTTTGACCTTTCTGGGGACACGAGAAGATTCAAGTCGGTTGTAAATGGAC
ATGCGAGCGGAGGATCAGCAACAGATGCAAGATGGAATAGCCAAACTGAA
CGCCATGCCTGTAGCCGACTTGCGCACCGAGTTACTGCGGATATGTGGCT
CAGTATCTTGGGTGGAGTCAGTCATCAAAACCTTCCCTCACACCTCGGCT
GCCTCGATCCTGACAGCAATGGATAGGGCGTGGTGGTCTCTGTCGAGACC
CGATTACCTCGAGGCTTTTGCAGCCCATCCTCGTATCGGAGATGGGGAGG
CTTTAAAAAAGAAATTTGCCACCGTACCCAAGGCCAGTGGCAAGGCGGGA
CCGGTTTGGGAGGCAGACGAACAAAAAGGAGCAGAAGGGGCCAATGAAAA
GACGCTTCAAAGCTTGGTTGTGCATAACAGATTGTACGAAGAGCGATTTG
GGCACATCTTTCTTGTCTGTGCCACTGGCAAAACGGCTGACGAGATGCTT
GCAATACTGCAAGATCGCATGCGCAACGAGCCAGCCTACGAGCTGATCAT
GGCGGCGGGAGAGCAGAATAAAATTACAGCACTGCGGCTTCACAAACTTT
TGACCTTTCTGGGGACACGAGAAGATTCAAGTCGGTTGTAA
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Synonyms
Publications