EWM27727.1, cds2956 (CDS) Nannochloropsis gaditana

Overview
NameEWM27727.1
Unique Namecds2956
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:369520..369543 +
Alignment locationCM002460.1:369636..369878 +
Alignment locationCM002460.1:369943..370272 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27727.1
Productohcu decarboxylase
Orig transcript idgnl|cribi|Naga_100034g15.6300.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:369520..369543 +
CM002460.1supercontigCM002460.1:369636..369878 +
CM002460.1supercontigCM002460.1:369943..370272 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR018020OHCU_decarboxylase
IPR017595OHCU_decarboxylase-2
Homology
BLAST of EWM27727.1 vs. NCBI_GenBank
Match: gi|585110000|gb|EWM27727.1| (ohcu decarboxylase [Nannochloropsis gaditana])

HSP 1 Score: 411.764 bits (1057), Expect = 1.144e-145
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0
Query:    1 MDMRAEDQQQMQDGIAKLNAMPVADLRTELLRICGSVSWVESVIKTFPHTSAASILTAMDRAWWSLSRPDYLEAFAAHPRIGDGEALKKKFATVPKASGKAGPVWEADEQKGAEGANEKTLQSLVVHNRLYEERFGHIFLVCATGKTADEMLAILQDRMRNEPAYELIMAAGEQNKITALRLHKLLTFLGTREDSSRL 198
            MDMRAEDQQQMQDGIAKLNAMPVADLRTELLRICGSVSWVESVIKTFPHTSAASILTAMDRAWWSLSRPDYLEAFAAHPRIGDGEALKKKFATVPKASGKAGPVWEADEQKGAEGANEKTLQSLVVHNRLYEERFGHIFLVCATGKTADEMLAILQDRMRNEPAYELIMAAGEQNKITALRLHKLLTFLGTREDSSRL
Sbjct:    1 MDMRAEDQQQMQDGIAKLNAMPVADLRTELLRICGSVSWVESVIKTFPHTSAASILTAMDRAWWSLSRPDYLEAFAAHPRIGDGEALKKKFATVPKASGKAGPVWEADEQKGAEGANEKTLQSLVVHNRLYEERFGHIFLVCATGKTADEMLAILQDRMRNEPAYELIMAAGEQNKITALRLHKLLTFLGTREDSSRL 198          
BLAST of EWM27727.1 vs. NCBI_GenBank
Match: gi|502458063|ref|WP_012794336.1| (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [Chitinophaga pinensis] >gi|256040629|gb|ACU64173.1| OHCU decarboxylase [Chitinophaga pinensis DSM 2588])

HSP 1 Score: 155.606 bits (392), Expect = 8.085e-45
Identity = 80/173 (46.24%), Postives = 112/173 (64.74%), Query Frame = 0
Query:   15 IAKLNAMPVADLRTELLRICGSVSWVESVIKTFPHTSAASILTAMDRAWWSLSRPDYLEAFAAHPRIGDGEALKKKFATVPKASGKAGPVWEADEQKGAEGANEKTLQSLVVHNRLYEERFGHIFLVCATGKTADEMLAILQDRMRNEPAYELIMAAGEQNKITALRLHKLLT 187
            +  LNA+P   L   L + CG+ +W++ +   FP     S+LTA  R W S +  D+ EAFA HP+IGD  +L+ KFA    A+G+    W   EQ GA  A+   LQ+L   N+LYE++FG+IF+VCATGK+A EML+IL +R++NE   E+ +A GEQ KITA+RL KLL+
Sbjct:    3 LTALNALPPEQLNEALGKCCGATAWIQKMTNEFPVKDEDSLLTAAARNWQSCTESDWKEAFAHHPKIGDLHSLQHKFA----ATGQ----WATGEQAGAVDASTVILQALSKGNKLYEDKFGYIFIVCATGKSAPEMLSILTERLKNEEGEEIKIAMGEQEKITAIRLKKLLS 167          
BLAST of EWM27727.1 vs. NCBI_GenBank
Match: gi|648570508|ref|WP_026262259.1| (OHCU decarboxylase [Spirosoma panaciterrae])

HSP 1 Score: 154.451 bits (389), Expect = 2.225e-44
Identity = 76/172 (44.19%), Postives = 109/172 (63.37%), Query Frame = 0
Query:   15 IAKLNAMPVADLRTELLRICGSVSWVESVIKTFPHTSAASILTAMDRAWWSLSRPDYLEAFAAHPRIGDGEALKKKFATVPKASGKAGPVWEADEQKGAEGANEKTLQSLVVHNRLYEERFGHIFLVCATGKTADEMLAILQDRMRNEPAYELIMAAGEQNKITALRLHKLL 186
            +++LN +  A+LR  L   CGS +WV  ++K FP  S  ++    +  W+  S  D+ EAF  HP+IGD ++L+ K+A   K        W + EQ G  GA+E  L+ L   NRLYE +FG+IF+VCATGK+A+EMLAIL+ R+ + P  E+++A  EQNKIT +RL KLL
Sbjct:    3 LSELNELSGAELRAALTTCCGSSNWVAEMVKIFPADSRETVTRQAEIIWFGCSETDWKEAFEQHPKIGDIDSLRSKYANTRK--------WASGEQSGVAGASETILERLSEGNRLYEAKFGYIFIVCATGKSAEEMLAILESRLPHSPGEEILVAMQEQNKITKIRLDKLL 166          
BLAST of EWM27727.1 vs. NCBI_GenBank
Match: gi|1056061228|ref|WP_067586926.1| (OHCU decarboxylase [Endozoicomonas ascidiicola])

HSP 1 Score: 154.066 bits (388), Expect = 2.971e-44
Identity = 73/174 (41.95%), Postives = 109/174 (62.64%), Query Frame = 0
Query:   15 IAKLNAMPVADLRTELLRICGSVSWVESVIKTFPHTSAASILTAMDRAWWSLSRPDYLEAFAAHPRIGDGEALKKKFATVPKASGKAGPVWEADEQKGAEGANEKTLQSLVVHNRLYEERFGHIFLVCATGKTADEMLAILQDRMRNEPAYELIMAAGEQNKITALRLHKLLTF 188
            ++ LNA+ V D  +   + C S SW++ ++++ P  +   +LT  D  W    + D+L+AF  HP+IGD  +LK+K+A   + +G         EQ G   AN+  LQ+L   N+ YE RFG+IF+VCATGK+ADEML +LQ R+ N    EL++AA EQ+KIT +RL+KL+T 
Sbjct:    3 LSDLNALAVVDASSLFRQCCTSESWIQGMVQSRPFANVEGLLTVADELWAKCDQSDFLQAFDGHPKIGDVSSLKEKYANTQQMAGH--------EQSGVNAANDDVLQALAEGNKEYEARFGYIFIVCATGKSADEMLGLLQSRLINNVDEELVVAAAEQHKITRIRLNKLVTL 168          
BLAST of EWM27727.1 vs. NCBI_GenBank
Match: gi|1100027171|emb|SFB93023.1| (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [Spirosoma endophyticum])

HSP 1 Score: 154.066 bits (388), Expect = 3.050e-44
Identity = 77/173 (44.51%), Postives = 105/173 (60.69%), Query Frame = 0
Query:   15 IAKLNAMPVADLRTELLRICGSVSWVESVIKTFPHTSAASILTAMDRAWWSLSRPDYLEAFAAHPRIGDGEALKKKFATVPKASGKAGPVWEADEQKGAEGANEKTLQSLVVHNRLYEERFGHIFLVCATGKTADEMLAILQDRMRNEPAYELIMAAGEQNKITALRLHKLLT 187
            + +LN +P+  L+  L   CGS +WV  + K FP  S  S+    +  W++ S  D+ EAF  HP+IGD  +L+ KFAT           W A EQ G   A+ + L+ L   NR YEE+FG+IF+VCATGK+ADEML +L  R+ N P  E+++A  EQNKIT +RL KLLT
Sbjct:    3 LPELNQLPLPQLKEALATCCGSTAWVNELAKIFPVESKESLFEQAEIIWFACSESDWREAFTHHPKIGDISSLRDKFATTK--------AWAAGEQSGVSVASLQVLEDLSEGNRRYEEKFGYIFIVCATGKSADEMLDLLNARLSNSPETEILIAMQEQNKITKIRLEKLLT 167          
BLAST of EWM27727.1 vs. NCBI_GenBank
Match: gi|1181032671|ref|WP_084444240.1| (OHCU decarboxylase [Hymenobacter roseosalivarius] >gi|1174200553|emb|SMB88245.1| OHCU decarboxylase [Hymenobacter roseosalivarius DSM 11622])

HSP 1 Score: 153.295 bits (386), Expect = 5.142e-44
Identity = 75/172 (43.60%), Postives = 108/172 (62.79%), Query Frame = 0
Query:   15 IAKLNAMPVADLRTELLRICGSVSWVESVIKTFPHTSAASILTAMDRAWWSLSRPDYLEAFAAHPRIGDGEALKKKFATVPKASGKAGPVWEADEQKGAEGANEKTLQSLVVHNRLYEERFGHIFLVCATGKTADEMLAILQDRMRNEPAYELIMAAGEQNKITALRLHKLL 186
            +A+LNA+P   L   L + CGS +WVE++ + FP     ++       W+ LS  D+ EAF  HP+IGD  +LK+KFA+           W A EQ   + +++  L++L   N  YE++FG+IF+VCATGK+A +MLA+LQ R+ NEPA E+ +A GEQ KIT +RL KLL
Sbjct:    3 LAELNALPTPALTETLRKCCGSTAWVEAMTRVFPVADLETLFEQASTIWYGLSEHDWREAFTHHPKIGDINSLKEKFASTS--------AWAAGEQAAVQHSSQAVLEALAEGNTCYEQKFGYIFIVCATGKSAAQMLALLQARLPNEPAAEIKLARGEQAKITQIRLEKLL 166          
BLAST of EWM27727.1 vs. NCBI_GenBank
Match: gi|1167624778|ref|WP_080056626.1| (OHCU decarboxylase [Spirosoma aerolatum])

HSP 1 Score: 152.14 bits (383), Expect = 1.445e-43
Identity = 76/172 (44.19%), Postives = 106/172 (61.63%), Query Frame = 0
Query:   15 IAKLNAMPVADLRTELLRICGSVSWVESVIKTFPHTSAASILTAMDRAWWSLSRPDYLEAFAAHPRIGDGEALKKKFATVPKASGKAGPVWEADEQKGAEGANEKTLQSLVVHNRLYEERFGHIFLVCATGKTADEMLAILQDRMRNEPAYELIMAAGEQNKITALRLHKLL 186
            + +LN  PV++L+  L   CGS +WV  ++K FP  S  ++    +  W++ S  D+ EAFA HP+IGD  +L+ KF +           W +DEQ G   A+E  LQ L   NRLYEE+FG+IF+VCATGK+A EML  L+ R+ + P  E+ +A  EQNKIT +RL KLL
Sbjct:    3 LPELNDAPVSELKAALATCCGSSTWVNDMVKLFPVDSRETLFEQAEMVWFACSEADWKEAFAHHPKIGDINSLRSKFTSTRN--------WASDEQSGVADASEVVLQRLAEGNRLYEEKFGYIFIVCATGKSAVEMLNSLESRLPHSPEEEIKIAMQEQNKITKIRLEKLL 166          
BLAST of EWM27727.1 vs. NCBI_GenBank
Match: gi|1113409103|gb|OJW71700.1| (OHCU decarboxylase [Spirosoma sp. 48-14])

HSP 1 Score: 152.14 bits (383), Expect = 1.629e-43
Identity = 76/172 (44.19%), Postives = 109/172 (63.37%), Query Frame = 0
Query:   15 IAKLNAMPVADLRTELLRICGSVSWVESVIKTFPHTSAASILTAMDRAWWSLSRPDYLEAFAAHPRIGDGEALKKKFATVPKASGKAGPVWEADEQKGAEGANEKTLQSLVVHNRLYEERFGHIFLVCATGKTADEMLAILQDRMRNEPAYELIMAAGEQNKITALRLHKLL 186
            + +LN  PV++L+  L   CGS +WV+ ++K FP  S  ++    +  W++ S  D+ EAFA HP+IGD  +L+ KFA+           W + EQ G   A+E+ L+ L   NRLYEE+FG+IF+VCATGK+A EML IL+ R+ + P  E+ +A  EQNKIT +RL KLL
Sbjct:    3 LPELNEAPVSELKAALTACCGSSAWVKDMVKLFPVDSRETLFEQAEMIWFACSEADWKEAFAHHPKIGDIGSLRSKFASTRN--------WASGEQSGVAEASEEILRRLAEGNRLYEEKFGYIFIVCATGKSASEMLNILESRLPHSPEKEIQIAMQEQNKITKIRLEKLL 166          
BLAST of EWM27727.1 vs. NCBI_GenBank
Match: gi|763122560|ref|WP_044002472.1| (OHCU decarboxylase [Hymenobacter swuensis] >gi|586956515|gb|AHJ98249.1| hypothetical protein Hsw_2654 [Hymenobacter swuensis DY53])

HSP 1 Score: 152.14 bits (383), Expect = 1.836e-43
Identity = 80/169 (47.34%), Postives = 104/169 (61.54%), Query Frame = 0
Query:   18 LNAMPVADLRTELLRICGSVSWVESVIKTFPHTSAASILTAMDRAWWSLSRPDYLEAFAAHPRIGDGEALKKKFATVPKASGKAGPVWEADEQKGAEGANEKTLQSLVVHNRLYEERFGHIFLVCATGKTADEMLAILQDRMRNEPAYELIMAAGEQNKITALRLHKLL 186
            LN +  +    EL R CGS +WVE + + FP    A++  A  R W  LS  D+ EAFA HP+IGD  AL++KFA+           W   EQ     A+E TLQ+L   N  YE+RFG+IF+VCATGK+A EMLA+LQ R+ N P  E+ +AA EQ+KIT +RL KLL
Sbjct:    6 LNNLSASARAEELRRCCGSSAWVEGLSQQFPFADTATLYQAATRTWNHLSEADWREAFAHHPKIGDVGALREKFASTS--------TWAEGEQGAVRLASEDTLQALAAGNAAYEQRFGYIFIVCATGKSAAEMLALLQARLPNPPEQEIGVAAAEQDKITRIRLEKLL 166          
BLAST of EWM27727.1 vs. NCBI_GenBank
Match: gi|1090780328|emb|SEF83208.1| (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [Marinobacterium lutimaris])

HSP 1 Score: 151.754 bits (382), Expect = 2.399e-43
Identity = 76/169 (44.97%), Postives = 107/169 (63.31%), Query Frame = 0
Query:   18 LNAMPVADLRTELLRICGSVSWVESVIKTFPHTSAASILTAMDRAWWSLSRPDYLEAFAAHPRIGDGEALKKKFATVPKASGKAGPVWEADEQKGAEGANEKTLQSLVVHNRLYEERFGHIFLVCATGKTADEMLAILQDRMRNEPAYELIMAAGEQNKITALRLHKLL 186
             N +P A+    L + C +  W+E +++  P   A ++    +R W  LS PDYLEAF  HP+IGD  +LKKK+A+  + +        A EQ GA  A+++ L++L   N  YE+RFG IF+VCATGK+A+EMLA+LQ R+ N+   EL +AAGEQ KIT LRL K+L
Sbjct:    6 FNKLPAAECENALNQCCVATRWIEQMLQARPFADAEALFETAERVWAGLSMPDYLEAFEGHPKIGDVSSLKKKYASTKQLA--------AGEQSGASVASDEVLRALAEGNDEYEQRFGFIFIVCATGKSAEEMLALLQARLGNDLMTELNIAAGEQAKITRLRLEKML 166          
The following BLAST results are available for this feature:
BLAST of EWM27727.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110000|gb|EWM27727.1|1.144e-145100.00ohcu decarboxylase [Nannochloropsis gaditana][more]
gi|502458063|ref|WP_012794336.1|8.085e-4546.242-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline deca... [more]
gi|648570508|ref|WP_026262259.1|2.225e-4444.19OHCU decarboxylase [Spirosoma panaciterrae][more]
gi|1056061228|ref|WP_067586926.1|2.971e-4441.95OHCU decarboxylase [Endozoicomonas ascidiicola][more]
gi|1100027171|emb|SFB93023.1|3.050e-4444.512-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline deca... [more]
gi|1181032671|ref|WP_084444240.1|5.142e-4443.60OHCU decarboxylase [Hymenobacter roseosalivarius] ... [more]
gi|1167624778|ref|WP_080056626.1|1.445e-4344.19OHCU decarboxylase [Spirosoma aerolatum][more]
gi|1113409103|gb|OJW71700.1|1.629e-4344.19OHCU decarboxylase [Spirosoma sp. 48-14][more]
gi|763122560|ref|WP_044002472.1|1.836e-4347.34OHCU decarboxylase [Hymenobacter swuensis] >gi|586... [more]
gi|1090780328|emb|SEF83208.1|2.399e-4344.972-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline deca... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2964rna2964Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications