rna2960, rna2960 (mRNA) Nannochloropsis gaditana

Overview
Namerna2960
Unique Namerna2960
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length552
Alignment locationCM002460.1:360597..362305 +

Link to JBrowse

Properties
Property NameValue
Productintegral membrane protein
Orig transcript idgnl|cribi|Naga_100034g19.6282.mrna
Orig protein idgnl|cribi|Naga_100034g19.6282
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:360597..362305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100034g19gene2840Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2960rna2960-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27709.1cds2952Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2960 ID=rna2960|Name=rna2960|organism=Nannochloropsis gaditana|type=mRNA|length=552bp
ATGCGAGAGGAGACTCGCTTTGTAAATGAAGAGGGCCGGCTCGTAGCTGT
TTCAATTTCTGGAAGTTTCCTGCGCGGTGTTACAGGCTTTCAAAGCAAGG
GGCCTCAGCTTCCACAGCGCATTAGTGTCCCAGCGCGACCAGCCGCTGCC
GTCATTGAAGAGCCTACCTCGCAGGAACAGGCTTTGATATATCGGCTCTC
TGGTGACTACAACTCGTTACATGCCGATCCCGAGATCGCCCAGACAGTAG
GCTTCGAGCGCCCAATTCTCCACGGGCTTTGCACCTTCGGGCATAGCGCA
CGGGCTGTCTTGCGCAGTGGACTGGTGCCTGGGGGCAATCCGGCGATGCT
GCGCTCTCTCACGGCTCGATTCTCCAAGCCGGCTTTTCCGGGGGAGACGT
TGGTAACAAGCTTATGGAAGGAAGACGGCAGCCAAGAGATAGTCTTCCAG
ACAAGAGTCAAGGAGCGTGGAGTGACTGTCCTTGAAGGGGGCCTCGCTAT
AATCGGGAAAAATTCTCCGGTTGTGCAGGAAGCACTTCAAAGCAAATTGT
GA
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protein sequence of rna2960

>rna2960-protein ID=rna2960-protein|Name=rna2960|organism=Nannochloropsis gaditana|type=polypeptide|length=354bp
MRCPQPIHALSPLLLILVSPACVDASTPAAAFFSGPRGSICKKLSSLLSA
SKSPKAIPAAVYSFNNGHVSRIYACHPATLTELKGTWRRSMPMSRWVVAL
IPELGAYSANFLTGFGLNSALALVGLAVKQRWLTSSGLLHAWILGIALWS
TLGWRGWALCVLYLICGSLVTKVKQSEKEALGIAEKRGGARGPENVWGSA
AAGTICATATIFLPAQLHVLLTGYVASLATKLSDTFASEIGKAYGKRTFL
ITNLKPVPPGTEGAISLEGTLAGVVGSIIIALAGVGMRFVAWKAVPVVLV
AAFLATNVESLLGASLQNDRHPWATNEFINFLNTLIGSLLGIGMVLALRL
AAPA
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mRNA from alignment at CM002460.1:360597..362305+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2960 ID=rna2960|Name=rna2960|organism=Nannochloropsis gaditana|type=mRNA|length=1709bp|location=Sequence derived from alignment at CM002460.1:360597..362305+ (Nannochloropsis gaditana)
CAGCCCCTCTCAGATGCCGTCTGCCTGGTTTAGTTGCACTTTGAAAGCCC
GTGAAGAGCAGATGCGGGCAGCGATGACCTGCATGGAGTTAAAAGTTATG
AGTCAGGGAGCCATTATGATGTAGAACAGTGCTTTTTCGCCTCCACGCCA
TGAAACGCTCGAGTCCCACCTGCCAGTGTACGAGCCCCAGGAGGCTCGCC
CATTCGGTGCGAGATCATCTATGATTGACGCAGCGACCTGACCACCTCCC
GGGGCTGCGGTTCCGCTGTAGCATGCATAGCATATCGCAGGCTCACATTC
ACTCATCTACTGCATGCCCTGATTCATGCTTTGGCGAAGATATTGAAAAG
GGCACCTTCTCAATGCACCCAGCGTGCCAAGGTGTGGAAACACGAACTTG
AAGAGGACCTTCAACAAAGGGGAGACGGGACTAGAATGAGATGCCCTCAG
CCGAtccacgccctctctcctctgctGCTAATCCTAGTGAGCCCGGCATG
CGTCGATGCGTCtactcctgctgctgcatttTTCAGTGGTCCGCGCGGTT
CTATCTGCAAAAAATTGTCGAGCCTGCTGTCAGCTTCGAAGTCCCCTAAA
GCGATACCTGCCGCCGTCTATTCATTTAACAATGGACACGTTAGCAGGAT
TTACGCGTGTCATCCTGCCACACTTACTGAGCTTAAAGGAACTTGGCGTC
GTTCCATGCCTATGTCGCGCTGGGTTGTTGCTCTCATACCGGAGCTCGGA
GCATACTCGGCCAATTTCCTGACAGGCTTCGGACTCAACTCAGCCTTAGC
CCTTGTAGGCTTGGCCGTGAAACAGCGTTGGCTAACCTCTTCGGGGCTAC
TTCATGCTTGGATACTGGGGATCGCGCTATGGTCCACATTGGGCTGGCGA
GGCTGGGCCCTTTGTGTCCTTTACCTCATCTGCGGCTCACTCGTCACTAA
GGTGAAGCAgtcggagaaggaggccttgggcatCGCTGAAAAGAGAGGCG
GTGCTCGGGGTCCTGAAAATGTATGGGGATCTGCTGCAGCGGTAAGTGCA
ATGGTATGAGCCCTCTTGAATAGCGTGGTAACCTCAGTCTTCTCAAGTCC
TTTATTTCTTCCCGTGTTTTTCCATTTCAAGGGAACGATATGTGCCACCG
CCACAATTTTCTTACCTGCACAGCTTCATGTGCTTCTCACCGGTTACGTT
GCCTCGTTGGCCACCAAGCTTTCGGACACATTCGCTAGCGAGATTGGGAA
GGCCTACGGGAAGCGCACTTTCCTCATTACCAATTTGAAGCCGGTGCCGC
CCGGGACCGAGGGGGCGATCAGCCTGGAGGGTACCCTGGCCGGTGTCGTG
GGATCTATCATCATCGCCCTGGCTGGTGTGGGTATGCGGTTTGTGGCTTG
GAAGGCTGTACCTGTcgtgctggtggcggccttcCTCGCGACCAACGTGG
AGAGCCTCCTAGGGGCAAGCCTGCAGAACGACCGGCACCCGTGGGCCACC
AACGAGTTCATCAACTTTCTCAACACTCTTATCGGAAGCCTCCTCGGCAT
AGGCATGGTTCTTGCCCTCCGTCTAGCGGCGCCCGCTTGAAATGCCAGGA
TGGAAAGCACTGATTTGGGCGTCCATCAAGCAGATTAAAGACTAGACGAA
CAAAAAAGAACATGCGCATACACTTTGTTGAAAACATATTGGCAAAAATA
ATTTTCAAG
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Coding sequence (CDS) from alignment at CM002460.1:360597..362305+

>rna2960 ID=rna2960|Name=rna2960|organism=Nannochloropsis gaditana|type=CDS|length=2130bp|location=Sequence derived from alignment at CM002460.1:360597..362305+ (Nannochloropsis gaditana)
ATGAGATGCCCTCAGCCGAtccacgccctctctcctctgctGCTAATCCT
AGTGAGCCCGGCATGCGTCGATGCGTCtactcctgctgctgcatttTTCA
GTGGTCCGCGCGGTTCTATCTGCAAAAAATTGTCGAGCCTGCTGTCAGCT
TCGAAGTCCCCTAAAGCGATACCTGCCGCCGTCTATTCATTTAACAATGG
ACACGTTAGCAGGATTTACGCGTGTCATCCTGCCACACTTACTGAGCTTA
AAGGAACTTGGCGTCGTTCCATGCCTATGTCGCGCTGGGTTGTTGCTCTC
ATACCGGAGCTCGGAGCATACTCGGCCAATTTCCTGACAGGCTTCGGACT
CAACTCAGCCTTAGCCCTTGTAGGCTTGGCCGTGAAACAGCGTTGGCTAA
CCTCTTCGGGGCTACTTCATGCTTGGATACTGGGGATCGCGCTATGGTCC
ACATTGGGCTGGCGAGGCTGGGCCCTTTGTGTCCTTTACCTCATCTGCGG
CTCACTCGTCACTAAGGTGAAGCAgtcggagaaggaggccttgggcatCG
CTGAAAAGAGAGGCGGTGCTCGGGGTCCTGAAAATGTATGGGGATCTGCT
GCAGCGGGAACGATATGTGCCACCGCCACAATTTTCTTACCTGCACAGCT
TCATGTGCTTCTCACCGGTTACGTTGCCTCGTTGGCCACCAAGCTTTCGG
ACACATTCGCTAGCGAGATTGGGAAGGCCTACGGGAAGCGCACTTTCCTC
ATTACCAATTTGAAGCCGGTGCCGCCCGGGACCGAGGGGGCGATCAGCCT
GGAGGGTACCCTGGCCGGTGTCGTGGGATCTATCATCATCGCCCTGGCTG
GTGTGGGTATGCGGTTTGTGGCTTGGAAGGCTGTACCTGTcgtgctggtg
gcggccttcCTCGCGACCAACGTGGAGAGCCTCCTAGGGGCAAGCCTGCA
GAACGACCGGCACCCGTGGGCCACCAACGAGTTCATCAACTTTCTCAACA
CTCTTATCGGAAGCCTCCTCGGCATAGGCATGGTTCTTGCCCTCCGTCTA
GCGGCGCCCGCTTGAATGAGATGCCCTCAGCCGAtccacgccctctctcc
tctgctGCTAATCCTAGTGAGCCCGGCATGCGTCGATGCGTCtactcctg
ctgctgcatttTTCAGTGGTCCGCGCGGTTCTATCTGCAAAAAATTGTCG
AGCCTGCTGTCAGCTTCGAAGTCCCCTAAAGCGATACCTGCCGCCGTCTA
TTCATTTAACAATGGACACGTTAGCAGGATTTACGCGTGTCATCCTGCCA
CACTTACTGAGCTTAAAGGAACTTGGCGTCGTTCCATGCCTATGTCGCGC
TGGGTTGTTGCTCTCATACCGGAGCTCGGAGCATACTCGGCCAATTTCCT
GACAGGCTTCGGACTCAACTCAGCCTTAGCCCTTGTAGGCTTGGCCGTGA
AACAGCGTTGGCTAACCTCTTCGGGGCTACTTCATGCTTGGATACTGGGG
ATCGCGCTATGGTCCACATTGGGCTGGCGAGGCTGGGCCCTTTGTGTCCT
TTACCTCATCTGCGGCTCACTCGTCACTAAGGTGAAGCAgtcggagaagg
aggccttgggcatCGCTGAAAAGAGAGGCGGTGCTCGGGGTCCTGAAAAT
GTATGGGGATCTGCTGCAGCGGGAACGATATGTGCCACCGCCACAATTTT
CTTACCTGCACAGCTTCATGTGCTTCTCACCGGTTACGTTGCCTCGTTGG
CCACCAAGCTTTCGGACACATTCGCTAGCGAGATTGGGAAGGCCTACGGG
AAGCGCACTTTCCTCATTACCAATTTGAAGCCGGTGCCGCCCGGGACCGA
GGGGGCGATCAGCCTGGAGGGTACCCTGGCCGGTGTCGTGGGATCTATCA
TCATCGCCCTGGCTGGTGTGGGTATGCGGTTTGTGGCTTGGAAGGCTGTA
CCTGTcgtgctggtggcggccttcCTCGCGACCAACGTGGAGAGCCTCCT
AGGGGCAAGCCTGCAGAACGACCGGCACCCGTGGGCCACCAACGAGTTCA
TCAACTTTCTCAACACTCTTATCGGAAGCCTCCTCGGCATAGGCATGGTT
CTTGCCCTCCGTCTAGCGGCGCCCGCTTGA
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Synonyms
Publications