EWM27709.1, cds2952 (CDS) Nannochloropsis gaditana

Overview
NameEWM27709.1
Unique Namecds2952
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:361032..361637 +
Alignment locationCM002460.1:361728..362186 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27709.1
Productintegral membrane protein
Orig transcript idgnl|cribi|Naga_100034g19.6282.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:361032..361637 +
CM002460.1supercontigCM002460.1:361728..362186 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR002794DUF92_TMEM19
Homology
BLAST of EWM27709.1 vs. NCBI_GenBank
Match: gi|585109982|gb|EWM27709.1| (integral membrane protein [Nannochloropsis gaditana])

HSP 1 Score: 702.205 bits (1811), Expect = 0.000e+0
Identity = 354/354 (100.00%), Postives = 354/354 (100.00%), Query Frame = 0
Query:    1 MRCPQPIHALSPLLLILVSPACVDASTPAAAFFSGPRGSICKKLSSLLSASKSPKAIPAAVYSFNNGHVSRIYACHPATLTELKGTWRRSMPMSRWVVALIPELGAYSANFLTGFGLNSALALVGLAVKQRWLTSSGLLHAWILGIALWSTLGWRGWALCVLYLICGSLVTKVKQSEKEALGIAEKRGGARGPENVWGSAAAGTICATATIFLPAQLHVLLTGYVASLATKLSDTFASEIGKAYGKRTFLITNLKPVPPGTEGAISLEGTLAGVVGSIIIALAGVGMRFVAWKAVPVVLVAAFLATNVESLLGASLQNDRHPWATNEFINFLNTLIGSLLGIGMVLALRLAAPA 354
            MRCPQPIHALSPLLLILVSPACVDASTPAAAFFSGPRGSICKKLSSLLSASKSPKAIPAAVYSFNNGHVSRIYACHPATLTELKGTWRRSMPMSRWVVALIPELGAYSANFLTGFGLNSALALVGLAVKQRWLTSSGLLHAWILGIALWSTLGWRGWALCVLYLICGSLVTKVKQSEKEALGIAEKRGGARGPENVWGSAAAGTICATATIFLPAQLHVLLTGYVASLATKLSDTFASEIGKAYGKRTFLITNLKPVPPGTEGAISLEGTLAGVVGSIIIALAGVGMRFVAWKAVPVVLVAAFLATNVESLLGASLQNDRHPWATNEFINFLNTLIGSLLGIGMVLALRLAAPA
Sbjct:    1 MRCPQPIHALSPLLLILVSPACVDASTPAAAFFSGPRGSICKKLSSLLSASKSPKAIPAAVYSFNNGHVSRIYACHPATLTELKGTWRRSMPMSRWVVALIPELGAYSANFLTGFGLNSALALVGLAVKQRWLTSSGLLHAWILGIALWSTLGWRGWALCVLYLICGSLVTKVKQSEKEALGIAEKRGGARGPENVWGSAAAGTICATATIFLPAQLHVLLTGYVASLATKLSDTFASEIGKAYGKRTFLITNLKPVPPGTEGAISLEGTLAGVVGSIIIALAGVGMRFVAWKAVPVVLVAAFLATNVESLLGASLQNDRHPWATNEFINFLNTLIGSLLGIGMVLALRLAAPA 354          
BLAST of EWM27709.1 vs. NCBI_GenBank
Match: gi|551669381|ref|XP_005837449.1| (hypothetical protein GUITHDRAFT_157284 [Guillardia theta CCMP2712] >gi|428181606|gb|EKX50469.1| hypothetical protein GUITHDRAFT_157284 [Guillardia theta CCMP2712])

HSP 1 Score: 258.84 bits (660), Expect = 4.966e-82
Identity = 129/213 (60.56%), Postives = 165/213 (77.46%), Query Frame = 0
Query:  130 QRWLTSSGLLHAWILGIALWSTLGWRGWALCVLYLICGSLVTKVKQSEKEALGIAEKRGGARGPENVWGSAAAGTICATATIFLPAQLHVLLTGYVASLATKLSDTFASEIGKAYGKRTFLITNLKPVPPGTEGAISLEGTLAGVVGSIIIALAGVGMRFVAWKAVPVVLVAAFLATNVESLLGASLQNDRHPWATNEFINFLNTLIGSLLGI 342
            + +LTSSGLL AW+LG+ LW +LG+ GW+ CV+YLI GSLVTKVK +EKE  GIAE RGGARGPENVWGSAA    CA    +      +   G+VASLATKLSDTFASE+GKAYGK+TFLIT++KPVP GTEGA+S+EGTLAGVVGS++IA+  V    +    +PVV++AAF+AT  ES++GA++Q D++ W TNE +N +NT IG+ +GI
Sbjct:   29 RSFLTSSGLLSAWLLGVILWGSLGFAGWSTCVVYLIAGSLVTKVKMAEKEKKGIAESRGGARGPENVWGSAATAAFCAMMATYSLQDTGLFRIGFVASLATKLSDTFASELGKAYGKKTFLITSMKPVPAGTEGAVSVEGTLAGVVGSLVIAVWAVMTNVMLASEIPVVMIAAFVATTCESVIGATVQ-DKYKWLTNEAVNAINTSIGAAVGI 240          
BLAST of EWM27709.1 vs. NCBI_GenBank
Match: gi|1072230686|gb|OEU15419.1| (DUF92-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 259.225 bits (661), Expect = 1.277e-80
Identity = 153/327 (46.79%), Postives = 202/327 (61.77%), Query Frame = 0
Query:   32 FFSGPRGSICKKLSSLLSASKSPKAIPAAVYSFNNGHVSRIYACHP-----ATLTELKGTWRRSM--PMSRWVVALIPELGAYSAN--FLTGFGLNSALALVGLAVKQRWLTSSGLLHAWILGIALWSTLGWRGWALCVLYLICGSLVTKVKQSEKEALGIAEKRGGARGPENVWGSAAAGTICATATI----FL--PAQLHVLLTGYVASLATKLSDTFASEIGKAYGKRTFLITNLKPVPPGTEGAISLEGTLAGVVGSIIIALAGVGMRFVAWKAVPVVLVAAFLATNVESLLGASLQ-NDRHPWATNEFINFLNTLIGSLLGI 342
            F + P  ++  KL       K+ + I     ++++  +     C P       +T ++   +R+     S  + AL   + +Y  N      F LN+ L  +      + LT  G  H+  LG ALW+TLGWRGW  CV+YL+ GS VTKVK  EKE LGIAE RGG RGPENVWGSAA G +CA   +    FL  P+ ++VL  GYVASLATKLSDTFASEIGKAYGK TFLIT L+ V PGTEGA+SLEGT A +VG  +++L G+ +  ++  AVP+ + AAF+ATN+ES+LGA+LQ  D   W TNE +NFLNTLIG+ + I
Sbjct:   28 FINNPSNNVKAKLF------KNQRIINDQESTWSSSSIGLYEGCTPLNNNNKDITTIRRRQQRTKLGATSPIIGALTKSIFSYQGNVPLSQAFALNAFLFTILRTKLLKMLTIEGFFHSLFLGTALWTTLGWRGWTTCVVYLLLGSAVTKVKMQEKEKLGIAEGRGGRRGPENVWGSAATGLVCALCAVQGPKFLGIPSNMYVL--GYVASLATKLSDTFASEIGKAYGKTTFLITTLERVLPGTEGAVSLEGTAASIVGGTLMSLYGLSIGLISRPAVPISIFAAFVATNIESVLGATLQGKDNLKWITNEVVNFLNTLIGAAVAI 346          
BLAST of EWM27709.1 vs. NCBI_GenBank
Match: gi|763311462|ref|WP_044169914.1| (TIGR00297 family protein [Oscillatoria sp. PCC 10802])

HSP 1 Score: 253.062 bits (645), Expect = 1.716e-79
Identity = 134/246 (54.47%), Postives = 175/246 (71.14%), Query Frame = 0
Query:  107 YSAN-FLTGFGLNSALALVGLAVKQRWLTSSGLLHAWILGIALWSTLGWRGWALCVLYLICGSLVTKVKQSEKEALGIAEKRGGARGPENVWGSAAAGTICATATIFLP---------AQLHVLLTGYVASLATKLSDTFASEIGKAYGKRTFLITNLKPVPPGTEGAISLEGTLAGVVGSIIIALAGVGMRFVAWKAVPVVLVAAFLATNVESLLGASLQNDRHPWATNEFINFLNTLIGSLLGI 342
            YS N +L   GLN+ L  +     ++ LT +GLLHAW LG+ +W TLGW+G+A+ + Y + GS VT++  +EKEA GIAEKR GARGPENVWGSA  GT+CA  +  +P           + +LL GYVAS +TKLSDT ASE+GK YGKRTFLIT L+PVP GTEGA+SLEGTLAGVV S +IAL G G+  V    V   ++AAF+ATN+ES++GA++Q+ +  W TNE +NF+NTL G+L+ I
Sbjct:    8 YSLNPWLVAVGLNTVLLAIAHFAPKKLLTPAGLLHAWALGVIIWGTLGWQGYAVVMFYFLVGSAVTRIGMAEKEAAGIAEKRSGARGPENVWGSALTGTLCALGSFIIPFFEPSVKGGVAVSLLLLGYVASFSTKLSDTCASEVGKVYGKRTFLITTLQPVPKGTEGAVSLEGTLAGVVASAVIALVGWGVGMVDLTDVLFCVMAAFVATNIESVIGATVQS-QFEWLTNEVVNFINTLTGALVAI 252          
BLAST of EWM27709.1 vs. NCBI_GenBank
Match: gi|1201340243|ref|WP_087591699.1| (TIGR00297 family protein [unicellular cyanobacterium SU3])

HSP 1 Score: 251.521 bits (641), Expect = 5.195e-79
Identity = 132/236 (55.93%), Postives = 170/236 (72.03%), Query Frame = 0
Query:  108 SANFLTGFGLNSALALVGLAVKQRWLTSSGLLHAWILGIALWSTLGWRGWALCVLYLICGSLVTKVKQSEKEALGIAEKRGGARGPENVWGSAAAGTICATATIFLPAQ-LHVLLTGYVASLATKLSDTFASEIGKAYGKRTFLITNLKPVPPGTEGAISLEGTLAGVVGSIIIALAGVGMRFVAWKAVPVVLVAAFLATNVESLLGASLQNDRHPWATNEFINFLNTLIGSLLGI 342
            S +++ G  +NS L      V ++ LT +G L+AWILG+ +W TLGW G+A+ + Y + GS VTK+   +KEA GIAEKR G RGPENVWGSA   TICA  T+F+ A    +LL GYVAS +TKLSDT ASE+GKAYGKRTFLIT LKPV PGTEGA+SLEGTLAG+V S +IAL G  +  +    +   +VAAF+ATN+ESL+GA+LQ +   W TNE +N +NTLIG+++ I
Sbjct:    8 SNSWILGIIINSILITFAFIVPKKLLTINGYLNAWILGVIVWGTLGWPGYAVVMFYFLVGSGVTKIGMEQKEAAGIAEKRSGMRGPENVWGSALIATICALGTLFIDATWTQLLLLGYVASFSTKLSDTTASEVGKAYGKRTFLITTLKPVSPGTEGAVSLEGTLAGIVASGVIALVGYLVGLIYLTGIVYCIVAAFIATNLESLIGATLQENLE-WMTNEIVNIINTLIGAVVAI 242          
BLAST of EWM27709.1 vs. NCBI_GenBank
Match: gi|506264930|ref|WP_015784705.1| (TIGR00297 family protein [Cyanothece sp. PCC 8802] >gi|256591403|gb|ACV02290.1| protein of unknown function DUF92 transmembrane [Cyanothece sp. PCC 8802])

HSP 1 Score: 251.136 bits (640), Expect = 6.452e-79
Identity = 126/233 (54.08%), Postives = 173/233 (74.25%), Query Frame = 0
Query:  111 FLTGFGLNSALALVGLAVKQRWLTSSGLLHAWILGIALWSTLGWRGWALCVLYLICGSLVTKVKQSEKEALGIAEKRGGARGPENVWGSAAAGTICATATIFLPAQLH-VLLTGYVASLATKLSDTFASEIGKAYGKRTFLITNLKPVPPGTEGAISLEGTLAGVVGSIIIALAGVGMRFVAWKAVPVVLVAAFLATNVESLLGASLQNDRHPWATNEFINFLNTLIGSLLGI 342
            ++ G  LNS L ++ L   ++ LT++G +HAWILG+ +W TLGW+G+ + + Y + GS VT++  ++KEA GIAEKR G RGPENVWGSA   TICA +T+F+      +L+ GYVAS +TKLSDT ASE+GKAYGKRTFLIT L+PVP GTEGAISLEGTLAG+  S +I+L G+ +  +  + V   ++AAF+ATN+ES++GA+LQ  +  W TNE +N +NTLIGS++ I
Sbjct:    7 WILGIALNSVLIVIALIAPKKLLTTAGYIHAWILGVLVWGTLGWKGYTIVMFYFLVGSGVTRIGMAQKEAEGIAEKRSGMRGPENVWGSALIATICAVSTLFVDTFWQDLLILGYVASFSTKLSDTTASEVGKAYGKRTFLITTLQPVPRGTEGAISLEGTLAGIAASGVISLLGLAIGLIDLQGVIFSIIAAFIATNLESVIGATLQA-KWDWMTNEVVNIINTLIGSIVAI 238          
BLAST of EWM27709.1 vs. NCBI_GenBank
Match: gi|126619818|gb|EAZ90544.1| (hypothetical protein CY0110_20143 [Cyanothece sp. CCY0110])

HSP 1 Score: 250.366 bits (638), Expect = 1.212e-78
Identity = 127/227 (55.95%), Postives = 167/227 (73.57%), Query Frame = 0
Query:  117 LNSALALVGLAVKQRWLTSSGLLHAWILGIALWSTLGWRGWALCVLYLICGSLVTKVKQSEKEALGIAEKRGGARGPENVWGSAAAGTICATATIFLPA-QLHVLLTGYVASLATKLSDTFASEIGKAYGKRTFLITNLKPVPPGTEGAISLEGTLAGVVGSIIIALAGVGMRFVAWKAVPVVLVAAFLATNVESLLGASLQNDRHPWATNEFINFLNTLIGSLLGI 342
            +NS L +    V ++ LT +G L+AWILG+ +W TLGW+G+A+ + Y + GS VTK+   +KEA GIAEKR G RGPENVWGSA   T CA  T+F+ A    +LL GYVAS +TKLSDT ASE+GKAYGK+TFLIT LKPV PGTEGA+SLEGTLAG+V S +IAL G  +  +   ++   ++AAF+ATN+ESL+GA+LQ ++  W TNE +N +NT IGS++ I
Sbjct:   16 INSVLIIFAFVVPKKLLTINGYLNAWILGVIVWGTLGWQGYAVVMFYFLVGSGVTKIGIEQKEAAGIAEKRSGMRGPENVWGSALIATFCALGTLFVEAPWTQLLLLGYVASFSTKLSDTTASEVGKAYGKKTFLITTLKPVSPGTEGAVSLEGTLAGIVASGVIALVGYLVGLINLSSIVYCIIAAFIATNLESLIGATLQ-EKLDWMTNEIVNIINTFIGSMVAI 241          
BLAST of EWM27709.1 vs. NCBI_GenBank
Match: gi|737832247|ref|WP_035799547.1| (membrane protein [Cyanothece sp. CCY0110])

HSP 1 Score: 250.366 bits (638), Expect = 1.279e-78
Identity = 127/227 (55.95%), Postives = 167/227 (73.57%), Query Frame = 0
Query:  117 LNSALALVGLAVKQRWLTSSGLLHAWILGIALWSTLGWRGWALCVLYLICGSLVTKVKQSEKEALGIAEKRGGARGPENVWGSAAAGTICATATIFLPA-QLHVLLTGYVASLATKLSDTFASEIGKAYGKRTFLITNLKPVPPGTEGAISLEGTLAGVVGSIIIALAGVGMRFVAWKAVPVVLVAAFLATNVESLLGASLQNDRHPWATNEFINFLNTLIGSLLGI 342
            +NS L +    V ++ LT +G L+AWILG+ +W TLGW+G+A+ + Y + GS VTK+   +KEA GIAEKR G RGPENVWGSA   T CA  T+F+ A    +LL GYVAS +TKLSDT ASE+GKAYGK+TFLIT LKPV PGTEGA+SLEGTLAG+V S +IAL G  +  +   ++   ++AAF+ATN+ESL+GA+LQ ++  W TNE +N +NT IGS++ I
Sbjct:   17 INSVLIIFAFVVPKKLLTINGYLNAWILGVIVWGTLGWQGYAVVMFYFLVGSGVTKIGIEQKEAAGIAEKRSGMRGPENVWGSALIATFCALGTLFVEAPWTQLLLLGYVASFSTKLSDTTASEVGKAYGKKTFLITTLKPVSPGTEGAVSLEGTLAGIVASGVIALVGYLVGLINLSSIVYCIIAAFIATNLESLIGATLQ-EKLDWMTNEIVNIINTFIGSMVAI 242          
BLAST of EWM27709.1 vs. NCBI_GenBank
Match: gi|499370638|ref|WP_011058216.1| (TIGR00297 family protein [Thermosynechococcus elongatus] >gi|22299927|ref|NP_683174.1| hypothetical protein tlr2384 [Thermosynechococcus elongatus BP-1] >gi|22296112|dbj|BAC09936.1| tlr2384 [Thermosynechococcus elongatus BP-1])

HSP 1 Score: 251.521 bits (641), Expect = 1.688e-78
Identity = 127/237 (53.59%), Postives = 172/237 (72.57%), Query Frame = 0
Query:  114 GFGLNSALALVGLAVKQRWLTSSGLLHAWILGIALWSTLGWRGWALCVLYLICGSLVTKVKQSEKEALGIAEKRGGARGPENVWGSAAAGTICATATIFLPAQLHVLLTGYVASLATKLSDTFASEIGKAYGKRTFLITNLKPVPPGTEGAISLEGTLAGVVGSIIIALAGVGMRFVAWKAVPVVLVAAFLATNVESLLGASLQNDRHPWATNEFINFLNTLIGSLLGIGMVLALRL 350
            G  LN+ L  + L  +Q+ LT +GL HAW+LG+ +W TL W+G+ + ++Y + GS VT++  +EKEA GIAEKR GARGPENVWGSA  GT+CA   + LP    + L G+VAS +TKLSDT ASE+GKAYG+RTFLIT L+ VP GTEGA+SLEGTLAG+VG+ +IAL G  +  +    +P+ ++AAF A  VESL+GA+LQ  R+PW +NE +N +NT +G+ L +G +  LRL
Sbjct:   56 GVLLNTLLGAIALLTRQKLLTPAGLFHAWLLGVLIWGTLSWQGYLIVMVYFLVGSAVTRLGMAEKEAAGIAEKRSGARGPENVWGSAFTGTVCALLLVLLPQWRQLFLVGFVASFSTKLSDTCASEVGKAYGQRTFLITTLQAVPRGTEGAVSLEGTLAGLVGATVIALLGWSLGLMGAITIPICILAAFFANVVESLVGATLQG-RYPWLSNELVNGINTTVGAGLAMGAIALLRL 291          
BLAST of EWM27709.1 vs. NCBI_GenBank
Match: gi|1121222967|ref|WP_073550381.1| (TIGR00297 family protein [Chroogloeocystis siderophila] >gi|1115260369|gb|OKH24655.1| TIGR00297 family protein [Chroogloeocystis siderophila 5.2 s.c.1])

HSP 1 Score: 248.825 bits (634), Expect = 6.173e-78
Identity = 133/251 (52.99%), Postives = 177/251 (70.52%), Query Frame = 0
Query:  107 YSAN-FLTGFGLNSALALVGLAVKQRWLTSSGLLHAWILGIALWSTLGWRGWALCVLYLICGSLVTKVKQSEKEALGIAEKRGGARGPENVWGSAAAGTICATATIFLPAQ------LHVLLTGYVASLATKLSDTFASEIGKAYGKRTFLITNLKPVPPGTEGAISLEGTLAGVVGSIIIALAGVGMRFVAWKAVPVVLVAAFLATNVESLLGASLQNDRHPWATNEFINFLNTLIGSLLGIGMVLALRL 350
            YS N +L   GLN+ L  +   V ++ LT +GL HAW+LG+ +W TL W+G+ + + Y + GS VT++  ++KEA GIAEKR GARGPENVWGSA  GT+CA  T+ +         + +LL GYVAS +TKLSDT ASE+GKAYGKRTFLITNL+PVP GTEGA+SLEGTLAGVV S  IA  G G+  +    V + ++AAF+ATN+ES++GA+LQN +  W TNE +N LNT IG++  + + L  +L
Sbjct:    5 YSLNSWLVAVGLNTLLLAIAWIVPKKLLTPAGLFHAWVLGVLIWGTLSWQGYVVVMFYFLVGSAVTRLGMAQKEAAGIAEKRSGARGPENVWGSALTGTLCAIGTLIISTLRGNQFIVSLLLLGYVASFSTKLSDTCASEVGKAYGKRTFLITNLQPVPRGTEGAVSLEGTLAGVVASGAIAFVGWGVGLIDLLGVLLCIMAAFIATNLESVIGATLQN-KFDWLTNELVNVLNTFIGAIAAVLLALIWQL 254          
The following BLAST results are available for this feature:
BLAST of EWM27709.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109982|gb|EWM27709.1|0.000e+0100.00integral membrane protein [Nannochloropsis gaditan... [more]
gi|551669381|ref|XP_005837449.1|4.966e-8260.56hypothetical protein GUITHDRAFT_157284 [Guillardia... [more]
gi|1072230686|gb|OEU15419.1|1.277e-8046.79DUF92-domain-containing protein [Fragilariopsis cy... [more]
gi|763311462|ref|WP_044169914.1|1.716e-7954.47TIGR00297 family protein [Oscillatoria sp. PCC 108... [more]
gi|1201340243|ref|WP_087591699.1|5.195e-7955.93TIGR00297 family protein [unicellular cyanobacteri... [more]
gi|506264930|ref|WP_015784705.1|6.452e-7954.08TIGR00297 family protein [Cyanothece sp. PCC 8802]... [more]
gi|126619818|gb|EAZ90544.1|1.212e-7855.95hypothetical protein CY0110_20143 [Cyanothece sp. ... [more]
gi|737832247|ref|WP_035799547.1|1.279e-7855.95membrane protein [Cyanothece sp. CCY0110][more]
gi|499370638|ref|WP_011058216.1|1.688e-7853.59TIGR00297 family protein [Thermosynechococcus elon... [more]
gi|1121222967|ref|WP_073550381.1|6.173e-7852.99TIGR00297 family protein [Chroogloeocystis siderop... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2960rna2960Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications