EWM27709.1, cds2952 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27709.1 vs. NCBI_GenBank
Match: gi|585109982|gb|EWM27709.1| (integral membrane protein [Nannochloropsis gaditana]) HSP 1 Score: 702.205 bits (1811), Expect = 0.000e+0 Identity = 354/354 (100.00%), Postives = 354/354 (100.00%), Query Frame = 0
Query: 1 MRCPQPIHALSPLLLILVSPACVDASTPAAAFFSGPRGSICKKLSSLLSASKSPKAIPAAVYSFNNGHVSRIYACHPATLTELKGTWRRSMPMSRWVVALIPELGAYSANFLTGFGLNSALALVGLAVKQRWLTSSGLLHAWILGIALWSTLGWRGWALCVLYLICGSLVTKVKQSEKEALGIAEKRGGARGPENVWGSAAAGTICATATIFLPAQLHVLLTGYVASLATKLSDTFASEIGKAYGKRTFLITNLKPVPPGTEGAISLEGTLAGVVGSIIIALAGVGMRFVAWKAVPVVLVAAFLATNVESLLGASLQNDRHPWATNEFINFLNTLIGSLLGIGMVLALRLAAPA 354
MRCPQPIHALSPLLLILVSPACVDASTPAAAFFSGPRGSICKKLSSLLSASKSPKAIPAAVYSFNNGHVSRIYACHPATLTELKGTWRRSMPMSRWVVALIPELGAYSANFLTGFGLNSALALVGLAVKQRWLTSSGLLHAWILGIALWSTLGWRGWALCVLYLICGSLVTKVKQSEKEALGIAEKRGGARGPENVWGSAAAGTICATATIFLPAQLHVLLTGYVASLATKLSDTFASEIGKAYGKRTFLITNLKPVPPGTEGAISLEGTLAGVVGSIIIALAGVGMRFVAWKAVPVVLVAAFLATNVESLLGASLQNDRHPWATNEFINFLNTLIGSLLGIGMVLALRLAAPA
Sbjct: 1 MRCPQPIHALSPLLLILVSPACVDASTPAAAFFSGPRGSICKKLSSLLSASKSPKAIPAAVYSFNNGHVSRIYACHPATLTELKGTWRRSMPMSRWVVALIPELGAYSANFLTGFGLNSALALVGLAVKQRWLTSSGLLHAWILGIALWSTLGWRGWALCVLYLICGSLVTKVKQSEKEALGIAEKRGGARGPENVWGSAAAGTICATATIFLPAQLHVLLTGYVASLATKLSDTFASEIGKAYGKRTFLITNLKPVPPGTEGAISLEGTLAGVVGSIIIALAGVGMRFVAWKAVPVVLVAAFLATNVESLLGASLQNDRHPWATNEFINFLNTLIGSLLGIGMVLALRLAAPA 354
BLAST of EWM27709.1 vs. NCBI_GenBank
Match: gi|551669381|ref|XP_005837449.1| (hypothetical protein GUITHDRAFT_157284 [Guillardia theta CCMP2712] >gi|428181606|gb|EKX50469.1| hypothetical protein GUITHDRAFT_157284 [Guillardia theta CCMP2712]) HSP 1 Score: 258.84 bits (660), Expect = 4.966e-82 Identity = 129/213 (60.56%), Postives = 165/213 (77.46%), Query Frame = 0
Query: 130 QRWLTSSGLLHAWILGIALWSTLGWRGWALCVLYLICGSLVTKVKQSEKEALGIAEKRGGARGPENVWGSAAAGTICATATIFLPAQLHVLLTGYVASLATKLSDTFASEIGKAYGKRTFLITNLKPVPPGTEGAISLEGTLAGVVGSIIIALAGVGMRFVAWKAVPVVLVAAFLATNVESLLGASLQNDRHPWATNEFINFLNTLIGSLLGI 342
+ +LTSSGLL AW+LG+ LW +LG+ GW+ CV+YLI GSLVTKVK +EKE GIAE RGGARGPENVWGSAA CA + + G+VASLATKLSDTFASE+GKAYGK+TFLIT++KPVP GTEGA+S+EGTLAGVVGS++IA+ V + +PVV++AAF+AT ES++GA++Q D++ W TNE +N +NT IG+ +GI
Sbjct: 29 RSFLTSSGLLSAWLLGVILWGSLGFAGWSTCVVYLIAGSLVTKVKMAEKEKKGIAESRGGARGPENVWGSAATAAFCAMMATYSLQDTGLFRIGFVASLATKLSDTFASELGKAYGKKTFLITSMKPVPAGTEGAVSVEGTLAGVVGSLVIAVWAVMTNVMLASEIPVVMIAAFVATTCESVIGATVQ-DKYKWLTNEAVNAINTSIGAAVGI 240
BLAST of EWM27709.1 vs. NCBI_GenBank
Match: gi|1072230686|gb|OEU15419.1| (DUF92-domain-containing protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 259.225 bits (661), Expect = 1.277e-80 Identity = 153/327 (46.79%), Postives = 202/327 (61.77%), Query Frame = 0
Query: 32 FFSGPRGSICKKLSSLLSASKSPKAIPAAVYSFNNGHVSRIYACHP-----ATLTELKGTWRRSM--PMSRWVVALIPELGAYSAN--FLTGFGLNSALALVGLAVKQRWLTSSGLLHAWILGIALWSTLGWRGWALCVLYLICGSLVTKVKQSEKEALGIAEKRGGARGPENVWGSAAAGTICATATI----FL--PAQLHVLLTGYVASLATKLSDTFASEIGKAYGKRTFLITNLKPVPPGTEGAISLEGTLAGVVGSIIIALAGVGMRFVAWKAVPVVLVAAFLATNVESLLGASLQ-NDRHPWATNEFINFLNTLIGSLLGI 342
F + P ++ KL K+ + I ++++ + C P +T ++ +R+ S + AL + +Y N F LN+ L + + LT G H+ LG ALW+TLGWRGW CV+YL+ GS VTKVK EKE LGIAE RGG RGPENVWGSAA G +CA + FL P+ ++VL GYVASLATKLSDTFASEIGKAYGK TFLIT L+ V PGTEGA+SLEGT A +VG +++L G+ + ++ AVP+ + AAF+ATN+ES+LGA+LQ D W TNE +NFLNTLIG+ + I
Sbjct: 28 FINNPSNNVKAKLF------KNQRIINDQESTWSSSSIGLYEGCTPLNNNNKDITTIRRRQQRTKLGATSPIIGALTKSIFSYQGNVPLSQAFALNAFLFTILRTKLLKMLTIEGFFHSLFLGTALWTTLGWRGWTTCVVYLLLGSAVTKVKMQEKEKLGIAEGRGGRRGPENVWGSAATGLVCALCAVQGPKFLGIPSNMYVL--GYVASLATKLSDTFASEIGKAYGKTTFLITTLERVLPGTEGAVSLEGTAASIVGGTLMSLYGLSIGLISRPAVPISIFAAFVATNIESVLGATLQGKDNLKWITNEVVNFLNTLIGAAVAI 346
BLAST of EWM27709.1 vs. NCBI_GenBank
Match: gi|763311462|ref|WP_044169914.1| (TIGR00297 family protein [Oscillatoria sp. PCC 10802]) HSP 1 Score: 253.062 bits (645), Expect = 1.716e-79 Identity = 134/246 (54.47%), Postives = 175/246 (71.14%), Query Frame = 0
Query: 107 YSAN-FLTGFGLNSALALVGLAVKQRWLTSSGLLHAWILGIALWSTLGWRGWALCVLYLICGSLVTKVKQSEKEALGIAEKRGGARGPENVWGSAAAGTICATATIFLP---------AQLHVLLTGYVASLATKLSDTFASEIGKAYGKRTFLITNLKPVPPGTEGAISLEGTLAGVVGSIIIALAGVGMRFVAWKAVPVVLVAAFLATNVESLLGASLQNDRHPWATNEFINFLNTLIGSLLGI 342
YS N +L GLN+ L + ++ LT +GLLHAW LG+ +W TLGW+G+A+ + Y + GS VT++ +EKEA GIAEKR GARGPENVWGSA GT+CA + +P + +LL GYVAS +TKLSDT ASE+GK YGKRTFLIT L+PVP GTEGA+SLEGTLAGVV S +IAL G G+ V V ++AAF+ATN+ES++GA++Q+ + W TNE +NF+NTL G+L+ I
Sbjct: 8 YSLNPWLVAVGLNTVLLAIAHFAPKKLLTPAGLLHAWALGVIIWGTLGWQGYAVVMFYFLVGSAVTRIGMAEKEAAGIAEKRSGARGPENVWGSALTGTLCALGSFIIPFFEPSVKGGVAVSLLLLGYVASFSTKLSDTCASEVGKVYGKRTFLITTLQPVPKGTEGAVSLEGTLAGVVASAVIALVGWGVGMVDLTDVLFCVMAAFVATNIESVIGATVQS-QFEWLTNEVVNFINTLTGALVAI 252
BLAST of EWM27709.1 vs. NCBI_GenBank
Match: gi|1201340243|ref|WP_087591699.1| (TIGR00297 family protein [unicellular cyanobacterium SU3]) HSP 1 Score: 251.521 bits (641), Expect = 5.195e-79 Identity = 132/236 (55.93%), Postives = 170/236 (72.03%), Query Frame = 0
Query: 108 SANFLTGFGLNSALALVGLAVKQRWLTSSGLLHAWILGIALWSTLGWRGWALCVLYLICGSLVTKVKQSEKEALGIAEKRGGARGPENVWGSAAAGTICATATIFLPAQ-LHVLLTGYVASLATKLSDTFASEIGKAYGKRTFLITNLKPVPPGTEGAISLEGTLAGVVGSIIIALAGVGMRFVAWKAVPVVLVAAFLATNVESLLGASLQNDRHPWATNEFINFLNTLIGSLLGI 342
S +++ G +NS L V ++ LT +G L+AWILG+ +W TLGW G+A+ + Y + GS VTK+ +KEA GIAEKR G RGPENVWGSA TICA T+F+ A +LL GYVAS +TKLSDT ASE+GKAYGKRTFLIT LKPV PGTEGA+SLEGTLAG+V S +IAL G + + + +VAAF+ATN+ESL+GA+LQ + W TNE +N +NTLIG+++ I
Sbjct: 8 SNSWILGIIINSILITFAFIVPKKLLTINGYLNAWILGVIVWGTLGWPGYAVVMFYFLVGSGVTKIGMEQKEAAGIAEKRSGMRGPENVWGSALIATICALGTLFIDATWTQLLLLGYVASFSTKLSDTTASEVGKAYGKRTFLITTLKPVSPGTEGAVSLEGTLAGIVASGVIALVGYLVGLIYLTGIVYCIVAAFIATNLESLIGATLQENLE-WMTNEIVNIINTLIGAVVAI 242
BLAST of EWM27709.1 vs. NCBI_GenBank
Match: gi|506264930|ref|WP_015784705.1| (TIGR00297 family protein [Cyanothece sp. PCC 8802] >gi|256591403|gb|ACV02290.1| protein of unknown function DUF92 transmembrane [Cyanothece sp. PCC 8802]) HSP 1 Score: 251.136 bits (640), Expect = 6.452e-79 Identity = 126/233 (54.08%), Postives = 173/233 (74.25%), Query Frame = 0
Query: 111 FLTGFGLNSALALVGLAVKQRWLTSSGLLHAWILGIALWSTLGWRGWALCVLYLICGSLVTKVKQSEKEALGIAEKRGGARGPENVWGSAAAGTICATATIFLPAQLH-VLLTGYVASLATKLSDTFASEIGKAYGKRTFLITNLKPVPPGTEGAISLEGTLAGVVGSIIIALAGVGMRFVAWKAVPVVLVAAFLATNVESLLGASLQNDRHPWATNEFINFLNTLIGSLLGI 342
++ G LNS L ++ L ++ LT++G +HAWILG+ +W TLGW+G+ + + Y + GS VT++ ++KEA GIAEKR G RGPENVWGSA TICA +T+F+ +L+ GYVAS +TKLSDT ASE+GKAYGKRTFLIT L+PVP GTEGAISLEGTLAG+ S +I+L G+ + + + V ++AAF+ATN+ES++GA+LQ + W TNE +N +NTLIGS++ I
Sbjct: 7 WILGIALNSVLIVIALIAPKKLLTTAGYIHAWILGVLVWGTLGWKGYTIVMFYFLVGSGVTRIGMAQKEAEGIAEKRSGMRGPENVWGSALIATICAVSTLFVDTFWQDLLILGYVASFSTKLSDTTASEVGKAYGKRTFLITTLQPVPRGTEGAISLEGTLAGIAASGVISLLGLAIGLIDLQGVIFSIIAAFIATNLESVIGATLQA-KWDWMTNEVVNIINTLIGSIVAI 238
BLAST of EWM27709.1 vs. NCBI_GenBank
Match: gi|126619818|gb|EAZ90544.1| (hypothetical protein CY0110_20143 [Cyanothece sp. CCY0110]) HSP 1 Score: 250.366 bits (638), Expect = 1.212e-78 Identity = 127/227 (55.95%), Postives = 167/227 (73.57%), Query Frame = 0
Query: 117 LNSALALVGLAVKQRWLTSSGLLHAWILGIALWSTLGWRGWALCVLYLICGSLVTKVKQSEKEALGIAEKRGGARGPENVWGSAAAGTICATATIFLPA-QLHVLLTGYVASLATKLSDTFASEIGKAYGKRTFLITNLKPVPPGTEGAISLEGTLAGVVGSIIIALAGVGMRFVAWKAVPVVLVAAFLATNVESLLGASLQNDRHPWATNEFINFLNTLIGSLLGI 342
+NS L + V ++ LT +G L+AWILG+ +W TLGW+G+A+ + Y + GS VTK+ +KEA GIAEKR G RGPENVWGSA T CA T+F+ A +LL GYVAS +TKLSDT ASE+GKAYGK+TFLIT LKPV PGTEGA+SLEGTLAG+V S +IAL G + + ++ ++AAF+ATN+ESL+GA+LQ ++ W TNE +N +NT IGS++ I
Sbjct: 16 INSVLIIFAFVVPKKLLTINGYLNAWILGVIVWGTLGWQGYAVVMFYFLVGSGVTKIGIEQKEAAGIAEKRSGMRGPENVWGSALIATFCALGTLFVEAPWTQLLLLGYVASFSTKLSDTTASEVGKAYGKKTFLITTLKPVSPGTEGAVSLEGTLAGIVASGVIALVGYLVGLINLSSIVYCIIAAFIATNLESLIGATLQ-EKLDWMTNEIVNIINTFIGSMVAI 241
BLAST of EWM27709.1 vs. NCBI_GenBank
Match: gi|737832247|ref|WP_035799547.1| (membrane protein [Cyanothece sp. CCY0110]) HSP 1 Score: 250.366 bits (638), Expect = 1.279e-78 Identity = 127/227 (55.95%), Postives = 167/227 (73.57%), Query Frame = 0
Query: 117 LNSALALVGLAVKQRWLTSSGLLHAWILGIALWSTLGWRGWALCVLYLICGSLVTKVKQSEKEALGIAEKRGGARGPENVWGSAAAGTICATATIFLPA-QLHVLLTGYVASLATKLSDTFASEIGKAYGKRTFLITNLKPVPPGTEGAISLEGTLAGVVGSIIIALAGVGMRFVAWKAVPVVLVAAFLATNVESLLGASLQNDRHPWATNEFINFLNTLIGSLLGI 342
+NS L + V ++ LT +G L+AWILG+ +W TLGW+G+A+ + Y + GS VTK+ +KEA GIAEKR G RGPENVWGSA T CA T+F+ A +LL GYVAS +TKLSDT ASE+GKAYGK+TFLIT LKPV PGTEGA+SLEGTLAG+V S +IAL G + + ++ ++AAF+ATN+ESL+GA+LQ ++ W TNE +N +NT IGS++ I
Sbjct: 17 INSVLIIFAFVVPKKLLTINGYLNAWILGVIVWGTLGWQGYAVVMFYFLVGSGVTKIGIEQKEAAGIAEKRSGMRGPENVWGSALIATFCALGTLFVEAPWTQLLLLGYVASFSTKLSDTTASEVGKAYGKKTFLITTLKPVSPGTEGAVSLEGTLAGIVASGVIALVGYLVGLINLSSIVYCIIAAFIATNLESLIGATLQ-EKLDWMTNEIVNIINTFIGSMVAI 242
BLAST of EWM27709.1 vs. NCBI_GenBank
Match: gi|499370638|ref|WP_011058216.1| (TIGR00297 family protein [Thermosynechococcus elongatus] >gi|22299927|ref|NP_683174.1| hypothetical protein tlr2384 [Thermosynechococcus elongatus BP-1] >gi|22296112|dbj|BAC09936.1| tlr2384 [Thermosynechococcus elongatus BP-1]) HSP 1 Score: 251.521 bits (641), Expect = 1.688e-78 Identity = 127/237 (53.59%), Postives = 172/237 (72.57%), Query Frame = 0
Query: 114 GFGLNSALALVGLAVKQRWLTSSGLLHAWILGIALWSTLGWRGWALCVLYLICGSLVTKVKQSEKEALGIAEKRGGARGPENVWGSAAAGTICATATIFLPAQLHVLLTGYVASLATKLSDTFASEIGKAYGKRTFLITNLKPVPPGTEGAISLEGTLAGVVGSIIIALAGVGMRFVAWKAVPVVLVAAFLATNVESLLGASLQNDRHPWATNEFINFLNTLIGSLLGIGMVLALRL 350
G LN+ L + L +Q+ LT +GL HAW+LG+ +W TL W+G+ + ++Y + GS VT++ +EKEA GIAEKR GARGPENVWGSA GT+CA + LP + L G+VAS +TKLSDT ASE+GKAYG+RTFLIT L+ VP GTEGA+SLEGTLAG+VG+ +IAL G + + +P+ ++AAF A VESL+GA+LQ R+PW +NE +N +NT +G+ L +G + LRL
Sbjct: 56 GVLLNTLLGAIALLTRQKLLTPAGLFHAWLLGVLIWGTLSWQGYLIVMVYFLVGSAVTRLGMAEKEAAGIAEKRSGARGPENVWGSAFTGTVCALLLVLLPQWRQLFLVGFVASFSTKLSDTCASEVGKAYGQRTFLITTLQAVPRGTEGAVSLEGTLAGLVGATVIALLGWSLGLMGAITIPICILAAFFANVVESLVGATLQG-RYPWLSNELVNGINTTVGAGLAMGAIALLRL 291
BLAST of EWM27709.1 vs. NCBI_GenBank
Match: gi|1121222967|ref|WP_073550381.1| (TIGR00297 family protein [Chroogloeocystis siderophila] >gi|1115260369|gb|OKH24655.1| TIGR00297 family protein [Chroogloeocystis siderophila 5.2 s.c.1]) HSP 1 Score: 248.825 bits (634), Expect = 6.173e-78 Identity = 133/251 (52.99%), Postives = 177/251 (70.52%), Query Frame = 0
Query: 107 YSAN-FLTGFGLNSALALVGLAVKQRWLTSSGLLHAWILGIALWSTLGWRGWALCVLYLICGSLVTKVKQSEKEALGIAEKRGGARGPENVWGSAAAGTICATATIFLPAQ------LHVLLTGYVASLATKLSDTFASEIGKAYGKRTFLITNLKPVPPGTEGAISLEGTLAGVVGSIIIALAGVGMRFVAWKAVPVVLVAAFLATNVESLLGASLQNDRHPWATNEFINFLNTLIGSLLGIGMVLALRL 350
YS N +L GLN+ L + V ++ LT +GL HAW+LG+ +W TL W+G+ + + Y + GS VT++ ++KEA GIAEKR GARGPENVWGSA GT+CA T+ + + +LL GYVAS +TKLSDT ASE+GKAYGKRTFLITNL+PVP GTEGA+SLEGTLAGVV S IA G G+ + V + ++AAF+ATN+ES++GA+LQN + W TNE +N LNT IG++ + + L +L
Sbjct: 5 YSLNSWLVAVGLNTLLLAIAWIVPKKLLTPAGLFHAWVLGVLIWGTLSWQGYVVVMFYFLVGSAVTRLGMAQKEAAGIAEKRSGARGPENVWGSALTGTLCAIGTLIISTLRGNQFIVSLLLLGYVASFSTKLSDTCASEVGKAYGKRTFLITNLQPVPRGTEGAVSLEGTLAGVVASGAIAFVGWGVGLIDLLGVLLCIMAAFIATNLESVIGATLQN-KFDWLTNELVNVLNTFIGAIAAVLLALIWQL 254 The following BLAST results are available for this feature:
BLAST of EWM27709.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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