rna296, rna296 (mRNA) Nannochloropsis gaditana

Overview
Namerna296
Unique Namerna296
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2585
Alignment locationCM002455.1:734432..735830 +

Link to JBrowse

Properties
Property NameValue
ProductHypoxia induced protein, domain protein
Orig transcript idgnl|cribi|Naga_100026g20.10662.mrna
Orig protein idgnl|cribi|Naga_100026g20.10662
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:734432..735830 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100026g20gene285Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna296rna296-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30408.1cds296Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna296 ID=rna296|Name=rna296|organism=Nannochloropsis gaditana|type=mRNA|length=2585bp
CACGTCAAGGTCTTTTCCGCCCCTCGCAGCACCCCTCGCCAGCGACTCCT
TCACACTTTCCTGGAGAGAGAACTCATGACCAATGTCTGTTTCGTTCCAA
TCACACTCAATAAAGCAGGATACTGTCCCTGCTCTTCGCCGTCATCTCAC
CGTCATCCGCCTGGAGGCCTGGGGCTCAGCTTGTTCATCCGGCAGTGCCG
CGACTCGAGGCATGACGGGGAAGACGACCCTGCGGGCCGTCCACGAGGAT
TTGGTCGAGCTGGTGCACCGCTTGAAAGGTACCTTGGGGGACCAAAACAG
TCCTGTCCCCGGAAAAGATGAAATGCAAGAGCTTATCACAGAAGCGGCAG
TAACACTCATCGAGTACAAGAGTATGGCTAGAGAGAGCGCCATGGCTGTC
GGGGGGTGCCGGACAGAGATGCAATCCAAGAAGAAGGAAGTCGATGACCG
GCACCTTCAGCTTCAAAATTTGATGTATGAAAAAGATCATTTGCAACGGA
CCATTCAAAGTTTGCGCGATTTTCCCATGGCGGAACTGACCAAGATCGAG
GAGGACGAGGGCGCACCCCTCCTTCCGGGGTTGACAGAGGGCGGCCAGGT
TCGTCTCCTGCCCGTGGAAGAGCACCGGCTCAGCTTGGAACGCCTGCAAG
AGGAGAAGGGGGCTCGCATTCAATTGCACGAAGAGCACGTGGCTGCCCAG
ACGAAACGTGCGGCTTTGTCGAGGGAGGTCGACGAGCTGCGCGCCATGCT
GGGTACCTCCCTGCCGCGCCAGATCGAGGAGCTCGACGCCCTCTGCACCG
GCATCCACGAGCGCATCCCAGGACTCTCGATCGCGGCACCCTTCGGCGGC
TTCCCGCCAGAGCAGGTGCAGGCCCTCCCCAGGCCGATGTACGTGTTGCT
GGGTAGGCTCCAGGCCTACCGGCAGGCCCAGGACCCGGCGGCCCGCCGGA
CGCGGGTCGAAGTCTTCCCCTGCGGCGACGAACAGGCTCCTCTCCCCCAA
TGTGTGGCTGCGTTGGGCACGGAAGCCGCGCGGCTAAAGGCCAAACGCGC
GCAATTGGGGCCCTCAGCCTCGTCGCCGAGCACGTCGGGGGAGGGGGAGG
GCGCGGAGGAGGAGGGCGGGTCTCTCATCCTTGTCGACCAGCTCGCGATA
CGTGTCGAGTTTCCGCCGCTGGGGCCCGACGGGGGTCTGCAGGAGAACGC
AGGCGACTGGGACGTCCTCATCTTCTTCTTCGCGCCCGAGGGGCGGGAGC
TGCTCGTGACAGCACCGGGACGCCACCCTCAGGCTTTGGTCAACCTGTTG
CCGGGGGACACGGGCGCGGACCCCTCGGCGGCCCCGACCTCGCACAGGGC
ACAAGGGACGCACGCGGGCTCCCGGCGCCTGAACCGCAAACGCGCGGTGG
ATACGGATAAGATCAGCGGGGCTTCGACCGCCACCTTCAGATCACCCCCC
TCCCCGCGCTCCTTTCTGTGGCTGCAGTGGCTGGGGGGCACGTCGCCCTT
TCCCCCCGAATTCGTGGACCTGGGTCTGGCCTACACGAGCTCCTGTATTC
TAAACAGGCTTCGCGTCCGCTTGCGCTCCCAGCGCAGTCTGGACGGCGTG
CTTGAGTCGCTGAGAAAGAGACCCGGCGACGTGCCCCGGGACGCGTCCTC
CCCCAGGCTCTTCCCGGGCGTGGAGGACGCGGGAGTCGGCAGGTGGCTGG
TGAGCTCCTTCACGGAGGTGACGCGGAGTGCGCTAAGCGGTGAAGAGCCG
GGGGAAGGAAGGGAGGAAGGAGGGGGCAAGGGGGAGGACCAGGGGGACAC
TGATCCCTTCGCCGAAGCGCCTTGCGGCGTGCTGGGCGGGGAGGAGGGGG
AAGAAGCGGGCGGGCCCGACGAGGTTCAGACGAGGAACGCAGATAGAGAG
GGTCCGGCCACTGTGAGATCGACGGAGGGGGGGGTGGCGTGGGAGCGGGC
GGGGGCGAGGTACTTCGACCTGGCGCTGAGGGCGCAGGCGGACACGAAAA
AAGGCGGTGGCGGGCGCAAGGAGAAGGCGCCGGAGGGACCAGAGTTGCAT
GTGGCTGTGGAGATAACGCCGGAGTATCCTATACGCCCCCCCCGTTTCCG
ACTCCTCTCTCCCTCCTCCCTCGCCGCCTCCACCCTCGCCGCTCACGCCC
CCTTTCGAGAGGCCTTCGCGCACATTCTCGTGGAGGTGAACGTCCACTAC
GAGGAGCTCCTCATGGGCGGCTCGGTGAGAGACTGGCTCTTCCCCCATCA
AGTGCACAAGCTGCTCTTCTGCTTGGAGGCGTCGGGCGCCGTTGGGGGCT
CGGGGAGTTCGGGGGGCGGATCGGAACGACTGAGATGGGGTAAAGACAGG
AGGAGGGGCTACTCCTTCGACACGCACTGCGCCTTGCTCATGCCTCGATG
ACAGTATGTGTCTCGGGGCTATCATAAAAATGAGCCAGTTCGACCGAGAT
GGCGTGGCCTTTGAGCTGAAAGAAAATCCCAAATTTCGTGTTCGCCACGA
CGGCCCGGCTGACCCCACTGACGGCGTGTTTATTTTCTTTCCCTCCGGAG
GCCTCGTATCTCCCCACTCTCACTACCCCGCGGTC
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protein sequence of rna296

>rna296-protein ID=rna296-protein|Name=rna296|organism=Nannochloropsis gaditana|type=polypeptide|length=144bp
MPQTFWSRLWDKTKKDPLIPIGCTATLGCLGAGLYAFKSGEVRDARPGNQ
FKAGFELLWLVKRQRSGCAPDRSRQTHSSFPAGKTIWRPRCTRIHIVLIP
TQKHLSQRMMRARVLAQGFTIVVLMAGSFYNMNIKSSGEPARER
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mRNA from alignment at CM002455.1:734432..735830+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna296 ID=rna296|Name=rna296|organism=Nannochloropsis gaditana|type=mRNA|length=1399bp|location=Sequence derived from alignment at CM002455.1:734432..735830+ (Nannochloropsis gaditana)
TTTGGTCCCCCAAGGTACCTTTCAAGCGGTGCACCAGCTCGACCAAATCC
TCGTGGACGGCCCGCAGGGTCGTCTTCCCCGTCATGCCTCGAGTCGCGGC
ACTGCCGGATGAACAAGCTGAGccccaggcctccaggcGGATGACGGTGA
GATGACGGCGAAGAGCAGGGACAGTATCCTGCTTTATTGAGTGTGATTGG
AACGAAACAGACATTGGTCATGAGTTCTCTCTCCAGGAAAGTGTGAAGGA
GTCGCTGGCGAGGGGTGCTGCGAGGGGCGGAAAAGACCTTGACGTGGGTG
GCAGAAGTGGCAAAACTCCGTGACACACCCCAGACGGTCCGGACTCTCAA
ATTCGAAGGTCACTGAGTGGTGTCAGTCACTGACTGACGATGCATCACAG
TATTTAGACAAGAAACAGGGACGAGCCCGTGATAGGATGCCACAGACGTT
CTGGAGCCGCCTGTGGGACAAGACCAAGAAGGACCCCCTGATCCCTATAG
GGTGCACGGCCACGCTGGGGTGCTTGGGCGCGGGGCTGTACGCTTTCAAG
AGCGGCGAGGTAAGGGATGCACGACCGGGGAATCAATTTAAGGCAGGATT
TGAGCTCTTATGGCTTGTGAAGCGGCAACGCAGCGGATGCGCACCAGATC
GGAGTAGGCAAACACATTCATCATTTCCGGCAGGAAAAACTATTTGGCGC
CCGAGATGTACACGTATTCACATTGTATTGATTCCAACACAGAAACATTT
GTCGCAGCGCATGATGCGGGCCCGTGTCCTTGCTCAAGGCTTCACGATTG
TGGTTTTGATGGCGGGTAAGGGCAGAAAGCAGCGGACGAAGACCCCTTAC
GGCCCGTGACCCGCACTCTTGCCGCTATCACTTTGTCTACCTGTACATTC
TCTCATAAAGCTATTGCATGGTCTCTCTCCTCAGGATCCTTCTACAACAT
GAATATAAAATCAAGCGGAGAGCCAGCCCGGGAGAGGTAGGCGAAGCGAT
AGGTACGGTGACGCGGTGCGGTTACCCTGCGTGTTTGTCCCGAATGCAGG
GCATTGAAGACATGACACGAAGCTCTACGTCTAGTTACTCATTTTCCGAG
AGCAAGCGCAGCCCTCGCGCCATCATTTCTGTTCACTGctcgctttcttt
tctccccatcTCCAAGTTCGTAATCAGCGACTTCAGTGCAAATTAGGGAC
TTCATATCCTGGGCACAACAAAAAGATCGCTGGCAAAGCGATGTAATGTA
TTTGAGTTGTGTGAAAGCTGGCTTTAATACGTATAAATGAGCAGGTTCAA
CAAGAGAGGATTTGAAGGTTGTCCGATGCCGCGTTCCTGGTAGTCTGTAC
AGGGCAACTCGAACGACCCAAAGGAAGACACCACAAGGCACATTTTGAT
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Coding sequence (CDS) from alignment at CM002455.1:734432..735830+

>rna296 ID=rna296|Name=rna296|organism=Nannochloropsis gaditana|type=CDS|length=870bp|location=Sequence derived from alignment at CM002455.1:734432..735830+ (Nannochloropsis gaditana)
ATGCCACAGACGTTCTGGAGCCGCCTGTGGGACAAGACCAAGAAGGACCC
CCTGATCCCTATAGGGTGCACGGCCACGCTGGGGTGCTTGGGCGCGGGGC
TGTACGCTTTCAAGAGCGGCGAGGTAAGGGATGCACGACCGGGGAATCAA
TTTAAGGCAGGATTTGAGCTCTTATGGCTTGTGAAGCGGCAACGCAGCGG
ATGCGCACCAGATCGGAGTAGGCAAACACATTCATCATTTCCGGCAGGAA
AAACTATTTGGCGCCCGAGATGTACACGTATTCACATTGTATTGATTCCA
ACACAGAAACATTTGTCGCAGCGCATGATGCGGGCCCGTGTCCTTGCTCA
AGGCTTCACGATTGTGGTTTTGATGGCGGGATCCTTCTACAACATGAATA
TAAAATCAAGCGGAGAGCCAGCCCGGGAGAGGTAGATGCCACAGACGTTC
TGGAGCCGCCTGTGGGACAAGACCAAGAAGGACCCCCTGATCCCTATAGG
GTGCACGGCCACGCTGGGGTGCTTGGGCGCGGGGCTGTACGCTTTCAAGA
GCGGCGAGGTAAGGGATGCACGACCGGGGAATCAATTTAAGGCAGGATTT
GAGCTCTTATGGCTTGTGAAGCGGCAACGCAGCGGATGCGCACCAGATCG
GAGTAGGCAAACACATTCATCATTTCCGGCAGGAAAAACTATTTGGCGCC
CGAGATGTACACGTATTCACATTGTATTGATTCCAACACAGAAACATTTG
TCGCAGCGCATGATGCGGGCCCGTGTCCTTGCTCAAGGCTTCACGATTGT
GGTTTTGATGGCGGGATCCTTCTACAACATGAATATAAAATCAAGCGGAG
AGCCAGCCCGGGAGAGGTAG
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Synonyms
Publications